Wall clock time and date at job start Tue Mar 31 2020 07:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47609 * 2 1 4 4 C 1.50703 * 109.47022 * 120.00080 * 2 1 3 5 5 H 1.07995 * 120.00077 * 124.79702 * 4 2 1 6 6 C 1.37879 * 119.99730 * 304.78966 * 4 2 1 7 7 N 1.31514 * 120.00462 * 351.79473 * 6 4 2 8 8 Si 1.86801 * 119.99740 * 171.79377 * 6 4 2 9 9 H 1.48500 * 109.47384 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46819 * 240.00357 * 8 6 4 11 11 H 1.48496 * 109.47382 * 120.00370 * 8 6 4 12 12 C 1.53003 * 109.47248 * 239.99498 * 2 1 3 13 13 N 1.46505 * 109.46954 * 60.00191 * 12 2 1 14 14 C 1.33788 * 124.17766 * 269.70189 * 13 12 2 15 15 O 1.21535 * 123.76912 * 0.03543 * 14 13 12 16 16 N 1.34533 * 112.45572 * 179.85877 * 14 13 12 17 17 C 1.47310 * 106.61897 * 0.38538 * 16 14 13 18 18 H 1.09001 * 110.59720 * 241.25027 * 17 16 14 19 19 C 1.50696 * 110.59887 * 118.30192 * 17 16 14 20 20 C 1.38670 * 120.41863 * 145.82397 * 19 17 16 21 21 C 1.38632 * 118.42078 * 179.97438 * 20 19 17 22 22 C 1.38223 * 119.16194 * 0.02562 * 21 20 19 23 23 N 1.31856 * 120.76325 * 359.97438 * 22 21 20 24 24 C 1.31884 * 121.72517 * 359.69723 * 23 22 21 25 25 C 1.34767 * 124.17489 * 89.99771 * 13 12 2 26 26 O 1.21232 * 127.16318 * 359.97438 * 25 13 12 27 27 H 1.08996 * 109.47003 * 292.71928 * 1 2 3 28 28 H 1.09003 * 109.47004 * 52.72032 * 1 2 3 29 29 H 1.08998 * 109.46888 * 172.71797 * 1 2 3 30 30 H 1.09001 * 109.47919 * 187.57863 * 3 2 1 31 31 H 1.09008 * 109.46787 * 307.57570 * 3 2 1 32 32 H 1.09001 * 109.47380 * 67.57215 * 3 2 1 33 33 H 0.97009 * 119.99297 * 5.70317 * 7 6 4 34 34 H 1.09001 * 109.47267 * 180.02562 * 12 2 1 35 35 H 1.08995 * 109.47506 * 300.00537 * 12 2 1 36 36 H 0.97003 * 126.68440 * 180.12225 * 16 14 13 37 37 H 1.08001 * 120.79244 * 359.97438 * 20 19 17 38 38 H 1.08000 * 120.41945 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.61623 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.61904 * 180.31496 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.7155 -1.5412 1.1333 6 6 1.6197 -0.2997 2.4803 7 7 0.9202 0.8062 2.6115 8 14 2.0543 -1.3141 3.9875 9 1 2.8418 -2.5032 3.5736 10 1 0.8078 -1.7560 4.6630 11 1 2.8592 -0.4895 4.9240 12 6 2.0400 -0.7214 -1.2492 13 7 1.5517 -0.0308 -2.4454 14 6 0.4002 -0.3194 -3.0624 15 8 -0.3650 -1.1883 -2.6928 16 7 0.1822 0.4623 -4.1354 17 6 1.3384 1.3693 -4.2379 18 1 1.0208 2.4077 -4.1440 19 6 2.0689 1.1523 -5.5380 20 6 2.6702 2.2172 -6.1917 21 6 3.3316 1.9705 -7.3848 22 6 3.3691 0.6805 -7.8799 23 7 2.7858 -0.3081 -7.2311 24 6 2.1534 -0.1114 -6.0906 25 6 2.2097 0.9698 -3.0636 26 8 3.2766 1.4504 -2.7465 27 1 -0.3633 0.3969 0.9479 28 1 -0.3633 0.6225 -0.8177 29 1 -0.3633 -1.0194 -0.1303 30 1 3.1216 1.4455 -0.1355 31 1 1.5703 1.9939 -0.8145 32 1 1.7916 1.9157 0.9499 33 1 0.6237 1.2888 1.8239 34 1 3.1300 -0.7218 -1.2490 35 1 1.6767 -1.7490 -1.2492 36 1 -0.5849 0.4318 -4.7284 37 1 2.6243 3.2151 -5.7812 38 1 3.8109 2.7762 -7.9211 39 1 3.8827 0.4800 -8.8086 40 1 1.6919 -0.9469 -5.5852 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924927409.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:25 Heat of formation + Delta-G solvation = 5.837639 kcal Electronic energy + Delta-G solvation = -25479.963914 eV Core-core repulsion = 21875.294609 eV Total energy + Delta-G solvation = -3604.669306 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.45231 -40.30201 -38.34181 -36.89375 -35.99440 -34.20002 -32.84070 -31.62492 -30.64905 -27.53015 -26.36130 -25.99123 -24.77693 -23.94088 -23.31232 -22.01475 -20.73705 -18.83972 -17.86893 -17.68601 -17.27165 -16.87356 -16.45269 -16.08783 -15.30823 -15.15554 -15.06096 -14.24027 -13.98356 -13.88332 -13.76649 -13.67181 -13.41888 -12.95308 -12.85295 -12.63415 -12.20495 -11.43988 -11.30705 -10.90455 -10.78731 -10.57602 -10.54265 -10.36174 -10.23405 -10.05499 -10.00279 -9.94191 -9.71790 -9.55826 -9.27723 -8.95344 -8.48056 -8.17430 -6.23689 -4.08337 0.63069 0.91034 1.77955 2.48770 3.11305 3.27147 3.44550 3.45839 3.48583 3.62047 3.94698 4.18165 4.28576 4.43515 4.53070 4.57345 4.64479 4.92393 5.13383 5.32898 5.36884 5.41148 5.71940 5.78239 5.92101 5.97980 6.05025 6.25355 6.29102 6.55161 6.66079 6.77527 6.81657 6.86799 7.14726 7.19062 7.34245 7.51103 7.59678 7.60945 7.74580 8.18511 8.33916 8.41489 8.85222 9.62929 11.02225 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.029530 B = 0.003890 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.946828 B = 7197.127281 C = 7441.087318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.039 3.961 3 C -0.138 4.138 4 C -0.587 4.587 5 H 0.053 0.947 6 C 0.027 3.973 7 N -0.916 5.916 8 Si 1.071 2.929 9 H -0.289 1.289 10 H -0.287 1.287 11 H -0.288 1.288 12 C 0.135 3.865 13 N -0.562 5.562 14 C 0.701 3.299 15 O -0.529 6.529 16 N -0.731 5.731 17 C 0.139 3.861 18 H 0.133 0.867 19 C -0.148 4.148 20 C -0.048 4.048 21 C -0.172 4.172 22 C 0.104 3.896 23 N -0.482 5.482 24 C 0.123 3.877 25 C 0.528 3.472 26 O -0.458 6.458 27 H 0.068 0.932 28 H 0.009 0.991 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.006 0.994 32 H 0.069 0.931 33 H 0.281 0.719 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.437 0.563 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.158 0.842 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.607 4.075 -20.073 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.038 3.962 3 C -0.196 4.196 4 C -0.625 4.625 5 H 0.071 0.929 6 C -0.177 4.177 7 N -0.556 5.556 8 Si 0.900 3.100 9 H -0.215 1.215 10 H -0.214 1.214 11 H -0.215 1.215 12 C 0.016 3.984 13 N -0.307 5.307 14 C 0.402 3.598 15 O -0.401 6.401 16 N -0.396 5.396 17 C 0.029 3.971 18 H 0.150 0.850 19 C -0.152 4.152 20 C -0.075 4.075 21 C -0.192 4.192 22 C -0.053 4.053 23 N -0.190 5.190 24 C -0.034 4.034 25 C 0.313 3.687 26 O -0.327 6.327 27 H 0.087 0.913 28 H 0.028 0.972 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.025 0.975 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.281 0.719 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.176 0.824 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.765 2.920 -18.264 18.580 hybrid contribution -0.298 1.042 -1.633 1.960 sum 1.467 3.962 -19.897 20.341 Atomic orbital electron populations 1.21973 0.97617 0.99864 1.00007 1.18652 0.92812 0.92797 0.91932 1.22054 0.99437 0.98107 0.99980 1.21733 1.30957 1.18574 0.91284 0.92865 1.25667 0.94864 0.96324 1.00857 1.70798 1.36020 1.14046 1.34759 0.83522 0.76231 0.75151 0.75109 1.21506 1.21364 1.21478 1.22173 0.99084 0.96261 0.80846 1.46582 1.20543 1.34727 1.28818 1.15911 0.81866 0.81909 0.80129 1.91019 1.47915 1.33203 1.67950 1.45563 1.23759 1.38523 1.31763 1.20746 0.86377 0.97733 0.92280 0.84986 1.20541 1.02187 0.95807 0.96626 1.21478 0.93265 0.99151 0.93597 1.22162 1.01005 0.98891 0.97097 1.22914 0.94839 0.88651 0.98907 1.67787 1.08157 1.35291 1.07753 1.22620 0.93953 0.95495 0.91358 1.20434 0.85523 0.79592 0.83188 1.90795 1.19207 1.54957 1.67713 0.91341 0.97214 0.93704 0.94024 0.97496 0.91267 0.90215 0.89896 0.89484 0.71855 0.84033 0.84207 0.82429 0.82891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 6.84 37.16 0.25 -3.07 16 2 C 0.04 0.95 0.57 -155.66 -0.09 0.86 16 3 C -0.14 -3.29 6.96 37.15 0.26 -3.03 16 4 C -0.59 -15.85 8.00 -34.44 -0.28 -16.13 16 5 H 0.05 1.43 7.76 -52.49 -0.41 1.02 16 6 C 0.03 0.75 5.07 -17.82 -0.09 0.66 16 7 N -0.92 -26.60 12.16 55.43 0.67 -25.93 16 8 Si 1.07 24.91 29.91 -169.99 -5.08 19.82 16 9 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.14 2.84 4.67 -4.04 -0.02 2.82 16 13 N -0.56 -10.02 2.16 -120.72 -0.26 -10.28 16 14 C 0.70 11.68 7.18 -88.02 -0.63 11.04 16 15 O -0.53 -10.56 16.19 5.33 0.09 -10.48 16 16 N -0.73 -8.49 5.38 -60.33 -0.32 -8.82 16 17 C 0.14 1.57 3.91 -69.36 -0.27 1.30 16 18 H 0.13 1.16 8.09 -51.93 -0.42 0.74 16 19 C -0.15 -1.53 5.09 -104.48 -0.53 -2.06 16 20 C -0.05 -0.41 9.86 -39.28 -0.39 -0.79 16 21 C -0.17 -1.27 10.11 -39.44 -0.40 -1.67 16 22 C 0.10 0.90 11.18 -17.55 -0.20 0.71 16 23 N -0.48 -5.56 10.36 -13.25 -0.14 -5.70 16 24 C 0.12 1.41 10.52 -17.55 -0.18 1.23 16 25 C 0.53 8.51 6.11 -10.55 -0.06 8.45 16 26 O -0.46 -8.53 16.75 5.60 0.09 -8.44 16 27 H 0.07 1.82 5.17 -51.93 -0.27 1.55 16 28 H 0.01 0.20 6.79 -51.93 -0.35 -0.15 16 29 H 0.04 1.11 7.73 -51.93 -0.40 0.71 16 30 H 0.04 1.00 7.84 -51.93 -0.41 0.59 16 31 H 0.01 0.13 6.81 -51.92 -0.35 -0.22 16 32 H 0.07 1.81 5.30 -51.93 -0.28 1.54 16 33 H 0.28 8.03 3.59 -40.82 -0.15 7.89 16 34 H 0.08 1.73 8.01 -51.93 -0.42 1.31 16 35 H 0.09 1.84 7.85 -51.93 -0.41 1.43 16 36 H 0.44 3.82 8.96 -40.82 -0.37 3.46 16 37 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.15 1.80 7.60 -52.49 -0.40 1.40 16 LS Contribution 325.97 15.07 4.91 4.91 Total: -1.00 -33.30 325.97 -7.35 -40.65 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.68 Total: 3.95 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -2.63 Total: 0.29 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.05 Total: -50.72 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.18 Total: -18.92 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.30 -7.35 -40.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924927409.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.490 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds