Wall clock time and date at job start Tue Mar 31 2020 07:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47609 * 2 1 4 4 C 1.50703 * 109.47022 * 120.00080 * 2 1 3 5 5 H 1.07995 * 120.00077 * 124.79702 * 4 2 1 6 6 C 1.37879 * 119.99730 * 304.78966 * 4 2 1 7 7 N 1.31514 * 120.00462 * 351.79473 * 6 4 2 8 8 Si 1.86801 * 119.99740 * 171.79377 * 6 4 2 9 9 H 1.48500 * 109.47384 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46819 * 240.00357 * 8 6 4 11 11 H 1.48496 * 109.47382 * 120.00370 * 8 6 4 12 12 C 1.53003 * 109.47248 * 239.99498 * 2 1 3 13 13 N 1.46505 * 109.46954 * 60.00191 * 12 2 1 14 14 C 1.33788 * 124.17766 * 269.70189 * 13 12 2 15 15 O 1.21535 * 123.76912 * 0.03543 * 14 13 12 16 16 N 1.34533 * 112.45572 * 179.85877 * 14 13 12 17 17 C 1.47310 * 106.61897 * 0.38538 * 16 14 13 18 18 H 1.09001 * 110.59720 * 241.25027 * 17 16 14 19 19 C 1.50696 * 110.59887 * 118.30192 * 17 16 14 20 20 C 1.38670 * 120.41863 * 145.82397 * 19 17 16 21 21 C 1.38632 * 118.42078 * 179.97438 * 20 19 17 22 22 C 1.38223 * 119.16194 * 0.02562 * 21 20 19 23 23 N 1.31856 * 120.76325 * 359.97438 * 22 21 20 24 24 C 1.31884 * 121.72517 * 359.69723 * 23 22 21 25 25 C 1.34767 * 124.17489 * 89.99771 * 13 12 2 26 26 O 1.21232 * 127.16318 * 359.97438 * 25 13 12 27 27 H 1.08996 * 109.47003 * 292.71928 * 1 2 3 28 28 H 1.09003 * 109.47004 * 52.72032 * 1 2 3 29 29 H 1.08998 * 109.46888 * 172.71797 * 1 2 3 30 30 H 1.09001 * 109.47919 * 187.57863 * 3 2 1 31 31 H 1.09008 * 109.46787 * 307.57570 * 3 2 1 32 32 H 1.09001 * 109.47380 * 67.57215 * 3 2 1 33 33 H 0.97009 * 119.99297 * 5.70317 * 7 6 4 34 34 H 1.09001 * 109.47267 * 180.02562 * 12 2 1 35 35 H 1.08995 * 109.47506 * 300.00537 * 12 2 1 36 36 H 0.97003 * 126.68440 * 180.12225 * 16 14 13 37 37 H 1.08001 * 120.79244 * 359.97438 * 20 19 17 38 38 H 1.08000 * 120.41945 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.61623 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.61904 * 180.31496 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.7155 -1.5412 1.1333 6 6 1.6197 -0.2997 2.4803 7 7 0.9202 0.8062 2.6115 8 14 2.0543 -1.3141 3.9875 9 1 2.8418 -2.5032 3.5736 10 1 0.8078 -1.7560 4.6630 11 1 2.8592 -0.4895 4.9240 12 6 2.0400 -0.7214 -1.2492 13 7 1.5517 -0.0308 -2.4454 14 6 0.4002 -0.3194 -3.0624 15 8 -0.3650 -1.1883 -2.6928 16 7 0.1822 0.4623 -4.1354 17 6 1.3384 1.3693 -4.2379 18 1 1.0208 2.4077 -4.1440 19 6 2.0689 1.1523 -5.5380 20 6 2.6702 2.2172 -6.1917 21 6 3.3316 1.9705 -7.3848 22 6 3.3691 0.6805 -7.8799 23 7 2.7858 -0.3081 -7.2311 24 6 2.1534 -0.1114 -6.0906 25 6 2.2097 0.9698 -3.0636 26 8 3.2766 1.4504 -2.7465 27 1 -0.3633 0.3969 0.9479 28 1 -0.3633 0.6225 -0.8177 29 1 -0.3633 -1.0194 -0.1303 30 1 3.1216 1.4455 -0.1355 31 1 1.5703 1.9939 -0.8145 32 1 1.7916 1.9157 0.9499 33 1 0.6237 1.2888 1.8239 34 1 3.1300 -0.7218 -1.2490 35 1 1.6767 -1.7490 -1.2492 36 1 -0.5849 0.4318 -4.7284 37 1 2.6243 3.2151 -5.7812 38 1 3.8109 2.7762 -7.9211 39 1 3.8827 0.4800 -8.8086 40 1 1.6919 -0.9469 -5.5852 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924927409.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:25 Heat of formation + Delta-G solvation = -16.755068 kcal Electronic energy + Delta-G solvation = -25480.943607 eV Core-core repulsion = 21875.294609 eV Total energy + Delta-G solvation = -3605.648999 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.70371 -41.07916 -39.69888 -38.63952 -37.34109 -35.66567 -33.67793 -32.72846 -32.21049 -28.72710 -27.98989 -27.92771 -26.72374 -24.66735 -24.36892 -23.10281 -22.13212 -20.60378 -19.19737 -19.03865 -18.40203 -18.10733 -17.55453 -17.13662 -16.64087 -16.45852 -16.10529 -15.64242 -15.40212 -15.10129 -14.96232 -14.79774 -14.73094 -14.57010 -14.31264 -14.03365 -13.41576 -13.25910 -12.92780 -12.66573 -12.61122 -12.44400 -12.20522 -12.10834 -11.87268 -11.68307 -11.43812 -10.95010 -10.82522 -10.67688 -10.46739 -10.40756 -10.24604 -10.06088 -8.40826 -6.26716 -0.10082 0.24578 0.52673 1.23113 1.56517 1.63975 1.80252 1.94120 2.04943 2.59614 2.65017 3.04925 3.20925 3.24052 3.53259 3.67601 3.90963 3.96186 4.05789 4.16856 4.28334 4.33890 4.42421 4.43427 4.55718 4.70659 4.72617 4.75030 4.87773 4.91132 5.09633 5.11739 5.13462 5.19796 5.52043 5.65234 5.72161 5.76196 6.06332 6.10828 6.27725 6.33450 6.69680 6.91035 7.06447 7.51298 8.85753 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.029530 B = 0.003890 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.946828 B = 7197.127281 C = 7441.087318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.031 3.969 3 C -0.119 4.119 4 C -0.600 4.600 5 H 0.048 0.952 6 C -0.018 4.018 7 N -0.939 5.939 8 Si 1.112 2.888 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.147 3.853 13 N -0.572 5.572 14 C 0.698 3.302 15 O -0.568 6.568 16 N -0.703 5.703 17 C 0.157 3.843 18 H 0.172 0.828 19 C -0.157 4.157 20 C -0.047 4.047 21 C -0.161 4.161 22 C 0.097 3.903 23 N -0.513 5.513 24 C 0.105 3.895 25 C 0.520 3.480 26 O -0.486 6.486 27 H 0.044 0.956 28 H 0.023 0.977 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.024 0.976 32 H 0.044 0.956 33 H 0.275 0.725 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.454 0.546 37 H 0.170 0.830 38 H 0.176 0.824 39 H 0.185 0.815 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.110 5.536 -22.197 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.030 3.970 3 C -0.177 4.177 4 C -0.639 4.639 5 H 0.066 0.934 6 C -0.218 4.218 7 N -0.580 5.580 8 Si 0.936 3.064 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.026 3.974 13 N -0.316 5.316 14 C 0.399 3.601 15 O -0.443 6.443 16 N -0.369 5.369 17 C 0.048 3.952 18 H 0.189 0.811 19 C -0.160 4.160 20 C -0.073 4.073 21 C -0.181 4.181 22 C -0.060 4.060 23 N -0.222 5.222 24 C -0.052 4.052 25 C 0.307 3.693 26 O -0.356 6.356 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.301 0.699 37 H 0.187 0.813 38 H 0.194 0.806 39 H 0.202 0.798 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.255 4.411 -20.459 21.050 hybrid contribution -0.384 0.621 -1.123 1.339 sum 1.871 5.032 -21.582 22.240 Atomic orbital electron populations 1.21742 0.97690 0.99022 0.99064 1.18673 0.92628 0.93079 0.92647 1.21820 0.98885 0.97857 0.99173 1.22074 1.30665 1.18481 0.92653 0.93359 1.26892 0.94481 0.96569 1.03819 1.70877 1.37397 1.15089 1.34665 0.82982 0.76405 0.74510 0.72516 1.19912 1.20943 1.20882 1.21690 0.98719 0.95789 0.81190 1.46528 1.21426 1.35378 1.28280 1.16005 0.81122 0.81979 0.80962 1.90995 1.48980 1.35008 1.69347 1.45392 1.24307 1.37099 1.30103 1.20814 0.84873 0.99002 0.90550 0.81097 1.20404 1.03320 0.96114 0.96174 1.21874 0.92112 0.99718 0.93632 1.22567 0.99728 0.99232 0.96538 1.23480 0.94098 0.88883 0.99532 1.67755 1.09261 1.36967 1.08219 1.22501 0.94962 0.95735 0.91991 1.21230 0.85487 0.78560 0.84003 1.90777 1.20460 1.55633 1.68754 0.93726 0.95810 0.94991 0.94801 0.95707 0.93744 0.90906 0.90212 0.90309 0.69870 0.81288 0.80610 0.79841 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 6.84 71.98 0.49 -5.30 16 2 C 0.03 1.52 0.57 -52.93 -0.03 1.49 16 3 C -0.12 -5.74 6.96 71.98 0.50 -5.24 16 4 C -0.60 -32.99 8.00 25.60 0.20 -32.78 16 5 H 0.05 2.63 7.76 -2.91 -0.02 2.61 16 6 C -0.02 -1.02 5.07 84.66 0.43 -0.59 16 7 N -0.94 -55.45 12.16 21.45 0.26 -55.19 16 8 Si 1.11 50.38 29.91 68.60 2.05 52.43 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.15 6.26 4.67 86.38 0.40 6.67 16 13 N -0.57 -20.22 2.16 -773.11 -1.67 -21.89 16 14 C 0.70 22.92 7.18 179.44 1.29 24.21 16 15 O -0.57 -22.90 16.19 -3.83 -0.06 -22.96 16 16 N -0.70 -15.06 5.38 -463.20 -2.49 -17.55 16 17 C 0.16 3.12 3.91 43.63 0.17 3.29 16 18 H 0.17 2.21 8.09 -2.39 -0.02 2.19 16 19 C -0.16 -2.83 5.09 -19.77 -0.10 -2.94 16 20 C -0.05 -0.60 9.86 22.47 0.22 -0.38 16 21 C -0.16 -1.71 10.11 22.36 0.23 -1.48 16 22 C 0.10 1.40 11.18 84.69 0.95 2.35 16 23 N -0.51 -11.15 10.36 -195.84 -2.03 -13.18 16 24 C 0.10 2.30 10.52 84.67 0.89 3.19 16 25 C 0.52 16.09 6.11 87.94 0.54 16.63 16 26 O -0.49 -17.59 16.75 -2.88 -0.05 -17.64 16 27 H 0.04 2.41 5.17 -2.39 -0.01 2.40 16 28 H 0.02 1.06 6.79 -2.39 -0.02 1.04 16 29 H 0.03 1.61 7.73 -2.39 -0.02 1.59 16 30 H 0.03 1.63 7.84 -2.39 -0.02 1.61 16 31 H 0.02 1.05 6.81 -2.38 -0.02 1.04 16 32 H 0.04 2.36 5.30 -2.39 -0.01 2.34 16 33 H 0.28 16.11 3.59 -92.70 -0.33 15.77 16 34 H 0.08 3.40 8.01 -2.39 -0.02 3.38 16 35 H 0.08 3.44 7.85 -2.39 -0.02 3.42 16 36 H 0.45 6.93 8.96 -92.71 -0.83 6.10 16 37 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 38 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 39 H 0.18 1.51 8.06 -2.91 -0.02 1.48 16 40 H 0.14 3.27 7.60 -2.91 -0.02 3.25 16 Total: -1.00 -74.35 325.97 2.88 -71.47 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.69 Total: 15.43 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 6.18 Total: 9.10 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -5.93 Total: -107.81 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.11 Total: -40.61 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.05 Total: 52.43 kcal Total: -74.35 2.88 -71.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924927409.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.710 kcal (2) G-P(sol) polarization free energy of solvation -74.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds