Wall clock time and date at job start Tue Mar 31 2020 07:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47137 * 2 1 4 4 C 1.50697 * 109.47298 * 240.00415 * 2 1 3 5 5 H 1.07998 * 120.00124 * 239.99635 * 4 2 1 6 6 C 1.37879 * 120.00107 * 59.99415 * 4 2 1 7 7 N 1.31516 * 120.00286 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00063 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46790 * 90.00527 * 8 6 4 10 10 H 1.48497 * 109.46909 * 210.00309 * 8 6 4 11 11 H 1.48499 * 109.47126 * 330.00040 * 8 6 4 12 12 C 1.53000 * 109.47537 * 119.99989 * 2 1 3 13 13 N 1.46502 * 109.46927 * 300.00499 * 12 2 1 14 14 C 1.33788 * 124.17993 * 89.97386 * 13 12 2 15 15 O 1.21545 * 123.77236 * 0.03030 * 14 13 12 16 16 N 1.34524 * 112.45866 * 180.02562 * 14 13 12 17 17 C 1.47313 * 106.61811 * 0.02562 * 16 14 13 18 18 H 1.08996 * 110.59922 * 118.68328 * 17 16 14 19 19 C 1.50702 * 110.59537 * 241.47281 * 17 16 14 20 20 C 1.38677 * 120.41881 * 218.54520 * 19 17 16 21 21 C 1.38628 * 118.41857 * 179.97438 * 20 19 17 22 22 C 1.38215 * 119.16579 * 0.02562 * 21 20 19 23 23 N 1.31854 * 120.76332 * 359.97438 * 22 21 20 24 24 C 1.31888 * 121.72838 * 0.02562 * 23 22 21 25 25 C 1.34766 * 124.17452 * 270.00916 * 13 12 2 26 26 O 1.21236 * 127.15710 * 0.02562 * 25 13 12 27 27 H 1.08994 * 109.47124 * 300.00037 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99661 * 1 2 3 29 29 H 1.08993 * 109.46944 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47360 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47362 * 300.00589 * 3 2 1 32 32 H 1.09001 * 109.46891 * 59.99710 * 3 2 1 33 33 H 0.96997 * 120.00393 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47412 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.46593 * 59.99673 * 12 2 1 36 36 H 0.97005 * 126.69143 * 179.97438 * 16 14 13 37 37 H 1.08003 * 120.78604 * 359.96123 * 20 19 17 38 38 H 1.08004 * 120.41395 * 180.02562 * 21 20 19 39 39 H 1.07994 * 119.62230 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.61890 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5883 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6035 8 14 2.3214 -1.1202 -4.0080 9 1 1.3428 -2.1614 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 0.3973 -0.3151 3.0588 15 8 -0.3704 -1.1807 2.6863 16 7 0.1810 0.4638 4.1340 17 6 1.3373 1.3709 4.2365 18 1 1.0193 2.4094 4.1445 19 6 2.0670 1.1547 5.5372 20 6 2.5900 2.2321 6.2363 21 6 3.2530 1.9858 7.4286 22 6 3.3704 0.6839 7.8775 23 7 2.8604 -0.3165 7.1862 24 6 2.2234 -0.1196 6.0483 25 6 2.2095 0.9701 3.0634 26 8 3.2763 1.4508 2.7462 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.7093 1.1619 -3.4844 34 1 3.1301 -0.7216 1.2490 35 1 1.6767 -1.7489 1.2492 36 1 -0.5869 0.4345 4.7260 37 1 2.4835 3.2391 5.8607 38 1 3.6725 2.8010 7.9995 39 1 3.8858 0.4835 8.8052 40 1 1.8194 -0.9640 5.5097 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924927410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:28 Heat of formation + Delta-G solvation = 0.045669 kcal Electronic energy + Delta-G solvation = -25419.417445 eV Core-core repulsion = 21814.496981 eV Total energy + Delta-G solvation = -3604.920464 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.36157 -40.24879 -38.24071 -36.53075 -35.83486 -33.89495 -32.76113 -31.59588 -30.89364 -27.44921 -26.11639 -25.66142 -25.07124 -23.90029 -23.23725 -21.95557 -20.72968 -18.67551 -17.71686 -17.60508 -17.07898 -16.55346 -16.19821 -15.79761 -15.24968 -15.08020 -14.89919 -14.52566 -14.15502 -13.85262 -13.81000 -13.61567 -13.37781 -12.86183 -12.67616 -12.25152 -12.09396 -11.25084 -11.15844 -10.91611 -10.69548 -10.63973 -10.35008 -10.24295 -10.17897 -10.06272 -9.92137 -9.86319 -9.50117 -9.45137 -9.20832 -8.79476 -8.68149 -8.32956 -5.97085 -4.08377 0.67827 0.95338 1.87690 2.58652 3.20084 3.31298 3.36813 3.38040 3.41576 3.50693 4.00609 4.26411 4.35003 4.42995 4.47995 4.61997 4.69020 4.97874 5.18574 5.29188 5.41129 5.48353 5.75893 5.83169 6.03836 6.10984 6.26324 6.33583 6.44155 6.83873 6.86240 6.96023 7.06990 7.12763 7.43723 7.48685 7.65306 7.65495 7.69097 7.73857 8.10146 8.16353 8.40450 8.45505 8.91081 9.56808 11.04022 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.029023 B = 0.003887 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.506579 B = 7201.935669 C = 7452.198099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.054 3.946 3 C -0.123 4.123 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.127 3.873 13 N -0.560 5.560 14 C 0.702 3.298 15 O -0.529 6.529 16 N -0.731 5.731 17 C 0.139 3.861 18 H 0.132 0.868 19 C -0.147 4.147 20 C -0.049 4.049 21 C -0.172 4.172 22 C 0.103 3.897 23 N -0.482 5.482 24 C 0.124 3.876 25 C 0.529 3.471 26 O -0.458 6.458 27 H 0.001 0.999 28 H 0.080 0.920 29 H 0.031 0.969 30 H 0.029 0.971 31 H 0.083 0.917 32 H -0.002 1.002 33 H 0.260 0.740 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.437 0.563 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.158 0.842 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 4.611 19.459 20.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.053 3.947 3 C -0.181 4.181 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.304 5.304 14 C 0.403 3.597 15 O -0.401 6.401 16 N -0.397 5.397 17 C 0.028 3.972 18 H 0.149 0.851 19 C -0.150 4.150 20 C -0.075 4.075 21 C -0.192 4.192 22 C -0.054 4.054 23 N -0.190 5.190 24 C -0.033 4.033 25 C 0.314 3.686 26 O -0.327 6.327 27 H 0.020 0.980 28 H 0.099 0.901 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.017 0.983 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.281 0.719 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.175 0.825 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.497 3.585 19.113 19.504 hybrid contribution -0.157 0.583 -0.895 1.079 sum 1.340 4.168 18.219 18.737 Atomic orbital electron populations 1.21745 0.97103 0.99467 0.99523 1.18486 0.93320 0.92873 0.90045 1.21783 0.98628 0.98064 0.99595 1.20916 1.31694 1.12108 0.89825 0.92430 1.24873 0.94822 0.94879 0.98829 1.69827 1.36534 1.22662 1.23167 0.86563 0.79248 0.79375 0.82619 1.20695 1.21290 1.19902 1.22291 0.99027 0.96325 0.81536 1.46546 1.20278 1.34743 1.28880 1.15892 0.81901 0.81871 0.80057 1.91020 1.47813 1.33450 1.67839 1.45564 1.23698 1.38716 1.31682 1.20754 0.86439 0.97737 0.92263 0.85057 1.20557 1.02307 0.95587 0.96564 1.21486 0.93551 0.99169 0.93342 1.22154 1.00903 0.98810 0.97347 1.22899 0.95162 0.88546 0.98752 1.67782 1.08737 1.35731 1.06764 1.22615 0.93368 0.95639 0.91727 1.20381 0.85531 0.79598 0.83122 1.90796 1.19317 1.54928 1.67671 0.98047 0.90103 0.94984 0.95134 0.89847 0.98309 0.93027 0.90039 0.89736 0.71946 0.84048 0.84259 0.82482 0.82932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 7.12 37.16 0.26 -2.72 16 2 C 0.05 1.31 0.57 -155.66 -0.09 1.22 16 3 C -0.12 -2.99 7.26 37.16 0.27 -2.72 16 4 C -0.51 -13.49 8.01 -34.44 -0.28 -13.76 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.82 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -24.35 9.35 55.43 0.52 -23.83 16 8 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.13 2.67 4.67 -4.04 -0.02 2.65 16 13 N -0.56 -10.13 2.13 -120.73 -0.26 -10.39 16 14 C 0.70 11.90 7.05 -88.03 -0.62 11.28 16 15 O -0.53 -10.73 16.32 5.33 0.09 -10.65 16 16 N -0.73 -8.72 5.52 -60.33 -0.33 -9.05 16 17 C 0.14 1.60 3.92 -69.36 -0.27 1.33 16 18 H 0.13 1.19 8.06 -51.93 -0.42 0.77 16 19 C -0.15 -1.54 5.07 -104.48 -0.53 -2.07 16 20 C -0.05 -0.42 9.84 -39.28 -0.39 -0.80 16 21 C -0.17 -1.29 10.11 -39.45 -0.40 -1.69 16 22 C 0.10 0.91 11.18 -17.55 -0.20 0.72 16 23 N -0.48 -5.65 10.36 -13.26 -0.14 -5.79 16 24 C 0.12 1.45 10.49 -17.55 -0.18 1.27 16 25 C 0.53 8.69 5.95 -10.56 -0.06 8.62 16 26 O -0.46 -8.69 16.87 5.60 0.09 -8.59 16 27 H 0.00 0.01 6.17 -51.93 -0.32 -0.31 16 28 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 29 H 0.03 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 32 H 0.00 -0.05 6.19 -51.93 -0.32 -0.37 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.08 1.69 8.01 -51.93 -0.42 1.27 16 35 H 0.08 1.78 7.86 -51.93 -0.41 1.37 16 36 H 0.44 3.94 8.96 -40.82 -0.37 3.57 16 37 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 39 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.15 1.84 7.72 -52.49 -0.41 1.44 16 LS Contribution 329.40 15.07 4.96 4.96 Total: -1.00 -32.17 329.40 -7.62 -39.78 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.94 Total: 2.53 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -2.59 Total: 5.04 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.21 Total: -49.07 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.18 Total: -19.24 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.17 -7.62 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924927410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.828 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds