Wall clock time and date at job start Tue Mar 31 2020 07:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47137 * 2 1 4 4 C 1.50697 * 109.47298 * 240.00415 * 2 1 3 5 5 H 1.07998 * 120.00124 * 239.99635 * 4 2 1 6 6 C 1.37879 * 120.00107 * 59.99415 * 4 2 1 7 7 N 1.31516 * 120.00286 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00063 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46790 * 90.00527 * 8 6 4 10 10 H 1.48497 * 109.46909 * 210.00309 * 8 6 4 11 11 H 1.48499 * 109.47126 * 330.00040 * 8 6 4 12 12 C 1.53000 * 109.47537 * 119.99989 * 2 1 3 13 13 N 1.46502 * 109.46927 * 300.00499 * 12 2 1 14 14 C 1.33788 * 124.17993 * 89.97386 * 13 12 2 15 15 O 1.21545 * 123.77236 * 0.03030 * 14 13 12 16 16 N 1.34524 * 112.45866 * 180.02562 * 14 13 12 17 17 C 1.47313 * 106.61811 * 0.02562 * 16 14 13 18 18 H 1.08996 * 110.59922 * 118.68328 * 17 16 14 19 19 C 1.50702 * 110.59537 * 241.47281 * 17 16 14 20 20 C 1.38677 * 120.41881 * 218.54520 * 19 17 16 21 21 C 1.38628 * 118.41857 * 179.97438 * 20 19 17 22 22 C 1.38215 * 119.16579 * 0.02562 * 21 20 19 23 23 N 1.31854 * 120.76332 * 359.97438 * 22 21 20 24 24 C 1.31888 * 121.72838 * 0.02562 * 23 22 21 25 25 C 1.34766 * 124.17452 * 270.00916 * 13 12 2 26 26 O 1.21236 * 127.15710 * 0.02562 * 25 13 12 27 27 H 1.08994 * 109.47124 * 300.00037 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99661 * 1 2 3 29 29 H 1.08993 * 109.46944 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47360 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47362 * 300.00589 * 3 2 1 32 32 H 1.09001 * 109.46891 * 59.99710 * 3 2 1 33 33 H 0.96997 * 120.00393 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47412 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.46593 * 59.99673 * 12 2 1 36 36 H 0.97005 * 126.69143 * 179.97438 * 16 14 13 37 37 H 1.08003 * 120.78604 * 359.96123 * 20 19 17 38 38 H 1.08004 * 120.41395 * 180.02562 * 21 20 19 39 39 H 1.07994 * 119.62230 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.61890 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5883 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6035 8 14 2.3214 -1.1202 -4.0080 9 1 1.3428 -2.1614 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 0.3973 -0.3151 3.0588 15 8 -0.3704 -1.1807 2.6863 16 7 0.1810 0.4638 4.1340 17 6 1.3373 1.3709 4.2365 18 1 1.0193 2.4094 4.1445 19 6 2.0670 1.1547 5.5372 20 6 2.5900 2.2321 6.2363 21 6 3.2530 1.9858 7.4286 22 6 3.3704 0.6839 7.8775 23 7 2.8604 -0.3165 7.1862 24 6 2.2234 -0.1196 6.0483 25 6 2.2095 0.9701 3.0634 26 8 3.2763 1.4508 2.7462 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.7093 1.1619 -3.4844 34 1 3.1301 -0.7216 1.2490 35 1 1.6767 -1.7489 1.2492 36 1 -0.5869 0.4345 4.7260 37 1 2.4835 3.2391 5.8607 38 1 3.6725 2.8010 7.9995 39 1 3.8858 0.4835 8.8052 40 1 1.8194 -0.9640 5.5097 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924927410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:27 Heat of formation + Delta-G solvation = -21.697373 kcal Electronic energy + Delta-G solvation = -25420.360294 eV Core-core repulsion = 21814.496981 eV Total energy + Delta-G solvation = -3605.863313 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.62816 -41.03649 -39.61907 -38.17434 -37.24900 -35.39044 -33.65042 -32.91345 -32.23838 -28.61440 -27.71282 -27.64353 -27.05612 -24.63440 -24.30128 -23.08212 -22.11309 -20.38339 -18.95536 -18.62042 -18.19901 -17.88000 -17.54631 -17.07926 -16.68114 -16.40224 -16.30607 -15.91855 -15.32854 -15.09773 -14.82568 -14.75261 -14.49990 -14.34518 -14.12111 -13.99490 -13.22329 -13.08873 -12.88713 -12.68771 -12.57932 -12.28186 -12.25908 -12.03157 -11.93623 -11.45344 -11.35483 -10.89165 -10.80076 -10.72862 -10.43710 -10.39384 -10.34172 -10.02440 -8.02196 -6.19783 -0.06337 0.28027 0.60091 1.31523 1.43870 1.45921 1.54584 2.02726 2.11984 2.45929 2.69157 3.10621 3.21207 3.27011 3.56739 3.72366 3.96326 4.02765 4.11069 4.32880 4.40932 4.49751 4.53371 4.59931 4.63787 4.75923 4.92417 4.98331 5.10738 5.12737 5.14003 5.16697 5.45354 5.59692 5.64507 5.68569 5.82368 6.02135 6.12217 6.17560 6.36411 6.42161 6.84758 6.94223 7.14444 7.47809 8.97242 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.029023 B = 0.003887 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.506579 B = 7201.935669 C = 7452.198099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.047 3.953 3 C -0.105 4.105 4 C -0.527 4.527 5 H 0.055 0.945 6 C 0.024 3.976 7 N -0.904 5.904 8 Si 0.952 3.048 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.138 3.862 13 N -0.570 5.570 14 C 0.699 3.301 15 O -0.569 6.569 16 N -0.704 5.704 17 C 0.156 3.844 18 H 0.171 0.829 19 C -0.155 4.155 20 C -0.047 4.047 21 C -0.161 4.161 22 C 0.096 3.904 23 N -0.514 5.514 24 C 0.105 3.895 25 C 0.520 3.480 26 O -0.487 6.487 27 H 0.012 0.988 28 H 0.056 0.944 29 H 0.016 0.984 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.014 0.986 33 H 0.260 0.740 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.453 0.547 37 H 0.171 0.829 38 H 0.177 0.823 39 H 0.184 0.816 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.766 6.217 21.508 22.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.046 3.954 3 C -0.162 4.162 4 C -0.566 4.566 5 H 0.073 0.927 6 C -0.175 4.175 7 N -0.542 5.542 8 Si 0.778 3.222 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.194 1.194 12 C 0.017 3.983 13 N -0.315 5.315 14 C 0.400 3.600 15 O -0.444 6.444 16 N -0.370 5.370 17 C 0.047 3.953 18 H 0.188 0.812 19 C -0.159 4.159 20 C -0.073 4.073 21 C -0.181 4.181 22 C -0.061 4.061 23 N -0.223 5.223 24 C -0.052 4.052 25 C 0.308 3.692 26 O -0.357 6.357 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.035 0.965 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.300 0.700 37 H 0.189 0.811 38 H 0.194 0.806 39 H 0.201 0.799 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.995 5.217 21.221 21.943 hybrid contribution -0.256 0.115 -1.407 1.435 sum 1.739 5.332 19.814 20.592 Atomic orbital electron populations 1.21506 0.97502 0.98132 0.98737 1.18495 0.92881 0.93040 0.91014 1.21547 0.97725 0.97963 0.99007 1.21248 1.31860 1.12335 0.91108 0.92684 1.25557 0.95059 0.95558 1.01359 1.69949 1.37145 1.23539 1.23602 0.85656 0.78798 0.78326 0.79431 1.20528 1.20984 1.19422 1.21834 0.98766 0.95906 0.81766 1.46513 1.21142 1.35397 1.28399 1.15992 0.81168 0.81939 0.80890 1.90995 1.48892 1.35270 1.69255 1.45393 1.24268 1.37315 1.30021 1.20818 0.84934 0.98981 0.90593 0.81193 1.20414 1.03441 0.95894 0.96141 1.21892 0.92352 0.99777 0.93254 1.22565 0.99430 0.99187 0.96888 1.23470 0.94467 0.88824 0.99298 1.67747 1.09813 1.37463 1.07246 1.22479 0.94495 0.95862 0.92347 1.21177 0.85493 0.78578 0.83949 1.90775 1.20587 1.55630 1.68745 0.96887 0.92526 0.96493 0.96096 0.92328 0.96753 0.93096 0.90206 0.90428 0.69960 0.81135 0.80584 0.79887 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.10 7.12 71.98 0.51 -4.58 16 2 C 0.05 2.31 0.57 -52.93 -0.03 2.28 16 3 C -0.10 -5.13 7.26 71.98 0.52 -4.61 16 4 C -0.53 -28.54 8.01 25.60 0.21 -28.34 16 5 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 6 C 0.02 1.31 5.15 84.65 0.44 1.75 16 7 N -0.90 -50.56 9.35 21.45 0.20 -50.36 16 8 Si 0.95 43.45 29.54 68.60 2.03 45.48 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 C 0.14 5.92 4.67 86.38 0.40 6.32 16 13 N -0.57 -20.58 2.13 -773.12 -1.65 -22.23 16 14 C 0.70 23.48 7.05 179.44 1.27 24.75 16 15 O -0.57 -23.37 16.32 -3.86 -0.06 -23.43 16 16 N -0.70 -15.60 5.52 -463.21 -2.56 -18.16 16 17 C 0.16 3.21 3.92 43.62 0.17 3.38 16 18 H 0.17 2.32 8.06 -2.39 -0.02 2.30 16 19 C -0.16 -2.88 5.07 -19.77 -0.10 -2.98 16 20 C -0.05 -0.60 9.84 22.47 0.22 -0.38 16 21 C -0.16 -1.73 10.11 22.36 0.23 -1.50 16 22 C 0.10 1.42 11.18 84.68 0.95 2.37 16 23 N -0.51 -11.41 10.36 -195.85 -2.03 -13.44 16 24 C 0.11 2.36 10.49 84.67 0.89 3.25 16 25 C 0.52 16.52 5.95 87.94 0.52 17.05 16 26 O -0.49 -18.03 16.87 -2.89 -0.05 -18.08 16 27 H 0.01 0.58 6.17 -2.39 -0.01 0.56 16 28 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 29 H 0.02 0.85 8.10 -2.39 -0.02 0.83 16 30 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 32 H 0.01 0.61 6.19 -2.39 -0.01 0.60 16 33 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 34 H 0.08 3.40 8.01 -2.39 -0.02 3.38 16 35 H 0.08 3.39 7.86 -2.39 -0.02 3.37 16 36 H 0.45 7.22 8.96 -92.70 -0.83 6.39 16 37 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 39 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.14 3.35 7.72 -2.91 -0.02 3.33 16 Total: -1.00 -71.75 329.40 2.32 -69.43 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.25 Total: 12.05 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 6.19 Total: 18.74 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -6.03 Total: -104.18 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -0.11 Total: -41.51 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.75 2.32 -69.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924927410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.728 kcal (2) G-P(sol) polarization free energy of solvation -71.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds