Wall clock time and date at job start Tue Mar 31 2020 08:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.82214 * 2 1 4 4 C 1.51496 * 109.82551 * 239.05159 * 2 1 3 5 5 O 1.20769 * 121.01941 * 106.64992 * 4 2 1 6 6 C 1.51319 * 117.95951 * 286.62180 * 4 2 1 7 7 C 1.53230 * 108.65591 * 307.40616 * 6 4 2 8 8 C 1.52623 * 109.49825 * 56.04506 * 7 6 4 9 9 N 1.46865 * 109.53729 * 301.85925 * 8 7 6 10 10 C 1.34780 * 120.71284 * 237.05193 * 9 8 7 11 11 O 1.21571 * 120.00010 * 5.28819 * 10 9 8 12 12 N 1.34778 * 119.99456 * 185.28266 * 10 9 8 13 13 C 1.39468 * 119.99610 * 183.98146 * 12 10 9 14 14 C 1.38649 * 119.64673 * 339.59165 * 13 12 10 15 15 C 1.40818 * 118.67025 * 180.22673 * 14 13 12 16 16 C 1.41548 * 120.99687 * 179.75262 * 15 14 13 17 17 H 1.08006 * 120.00040 * 333.74205 * 16 15 14 18 18 C 1.40031 * 120.00296 * 153.73738 * 16 15 14 19 19 N 1.30748 * 119.99795 * 332.90584 * 18 16 15 20 20 Si 1.86793 * 119.99972 * 152.90402 * 18 16 15 21 21 H 1.48494 * 109.47372 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47022 * 240.00064 * 20 18 16 23 23 H 1.48505 * 109.47125 * 120.00342 * 20 18 16 24 24 C 1.41161 * 118.00670 * 359.47905 * 15 14 13 25 25 C 1.36590 * 119.12658 * 0.27661 * 24 15 14 26 26 N 1.32068 * 121.26015 * 359.97421 * 25 24 15 27 27 H 1.09001 * 109.47279 * 299.12634 * 1 2 3 28 28 H 1.08996 * 109.47484 * 59.12383 * 1 2 3 29 29 H 1.08997 * 109.47332 * 179.12879 * 1 2 3 30 30 H 1.09006 * 109.60553 * 67.16014 * 6 4 2 31 31 H 1.09001 * 109.60863 * 187.65578 * 6 4 2 32 32 H 1.08993 * 109.48293 * 176.16253 * 7 6 4 33 33 H 1.09003 * 109.47738 * 296.18579 * 7 6 4 34 34 H 1.09003 * 109.40260 * 181.81953 * 8 7 6 35 35 H 1.09008 * 109.34056 * 61.86144 * 8 7 6 36 36 H 0.96998 * 120.00760 * 3.98550 * 12 10 9 37 37 H 1.07994 * 120.66415 * 359.97438 * 14 13 12 38 38 H 0.96995 * 120.00010 * 356.22776 * 19 18 16 39 39 H 1.08009 * 120.43541 * 180.29341 * 24 15 14 40 40 H 1.07999 * 119.36739 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8995 1.0254 0.0000 4 6 2.0437 -0.7329 -1.2223 5 8 2.5338 -0.1319 -2.1481 6 6 1.9247 -2.2412 -1.2472 7 6 2.5502 -2.8035 0.0336 8 6 1.8786 -2.1703 1.2490 9 7 2.0292 -0.7106 1.1885 10 6 2.6169 -0.0369 2.1971 11 8 3.1148 -0.6443 3.1251 12 7 2.6528 1.3103 2.1767 13 6 3.3326 2.0049 3.1769 14 6 3.5987 1.3807 4.3859 15 6 4.2821 2.1028 5.3831 16 6 4.5747 1.5155 6.6374 17 1 3.9543 0.7174 7.0178 18 6 5.6684 1.9691 7.3849 19 7 6.6960 2.5058 6.7802 20 14 5.6595 1.8072 9.2458 21 1 4.3908 1.1701 9.6811 22 1 5.7739 3.1543 9.8603 23 1 6.8070 0.9681 9.6752 24 6 4.6719 3.4280 5.0924 25 6 4.3698 3.9568 3.8697 26 7 3.7227 3.2522 2.9592 27 1 -0.3634 0.5002 0.8977 28 1 -0.3634 0.5273 -0.8820 29 1 -0.3634 -1.0275 -0.0156 30 1 0.8732 -2.5243 -1.2957 31 1 2.4525 -2.6355 -2.1156 32 1 2.4113 -3.8842 0.0619 33 1 3.6156 -2.5735 0.0491 34 1 2.3465 -2.5471 2.1586 35 1 0.8192 -2.4271 1.2508 36 1 2.2057 1.7967 1.4665 37 1 3.2844 0.3624 4.5610 38 1 6.7249 2.5403 5.8113 39 1 5.2023 4.0160 5.8269 40 1 4.6659 4.9704 3.6433 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932162781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:07 Heat of formation + Delta-G solvation = -24.259195 kcal Electronic energy + Delta-G solvation = -24692.666004 eV Core-core repulsion = 21086.691601 eV Total energy + Delta-G solvation = -3605.974402 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.04531 -39.63437 -38.26870 -36.66550 -34.91287 -34.01538 -33.02980 -31.39427 -30.41936 -28.76599 -27.28636 -25.62925 -24.53884 -23.22219 -22.09518 -21.41152 -20.53196 -18.82705 -18.64320 -17.87914 -16.78705 -15.95294 -15.74307 -15.37084 -15.31370 -14.98493 -14.68997 -14.64518 -14.11026 -14.06818 -13.66892 -13.45328 -13.02468 -12.88709 -12.71740 -12.59693 -12.40432 -12.25404 -11.83957 -11.75635 -11.48283 -11.26813 -11.16952 -10.84901 -10.43614 -10.08916 -9.98807 -9.89315 -9.18523 -9.06655 -8.78262 -8.13346 -8.09220 -7.36814 -7.12221 -4.60384 1.48902 2.47196 2.62259 2.80733 3.15035 3.24188 3.34998 3.44332 3.62674 3.84335 3.99430 4.24708 4.48406 4.50141 4.61558 4.73291 4.86814 5.00914 5.13543 5.21427 5.30223 5.42746 5.47674 5.53698 5.69198 5.73259 5.80907 5.87495 6.17527 6.42207 6.51612 6.80084 6.85250 6.97536 7.07762 7.34938 7.38508 7.63933 7.78301 7.97028 8.08655 8.28316 8.66732 8.74599 8.83641 9.45352 9.98550 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.003566 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.911715 B = 7849.219801 C = 8464.954673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.090 3.910 3 H 0.109 0.891 4 C 0.360 3.640 5 O -0.444 6.444 6 C -0.168 4.168 7 C -0.130 4.130 8 C 0.122 3.878 9 N -0.623 5.623 10 C 0.711 3.289 11 O -0.549 6.549 12 N -0.662 5.662 13 C 0.354 3.646 14 C -0.277 4.277 15 C 0.120 3.880 16 C -0.507 4.507 17 H 0.081 0.919 18 C 0.040 3.960 19 N -0.787 5.787 20 Si 1.073 2.927 21 H -0.275 1.275 22 H -0.273 1.273 23 H -0.277 1.277 24 C -0.280 4.280 25 C 0.127 3.873 26 N -0.611 5.611 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.397 0.603 37 H 0.147 0.853 38 H 0.300 0.700 39 H 0.111 0.889 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.235 -8.718 -11.260 18.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.016 4.016 3 H 0.127 0.873 4 C 0.233 3.767 5 O -0.314 6.314 6 C -0.206 4.206 7 C -0.168 4.168 8 C 0.000 4.000 9 N -0.364 5.364 10 C 0.413 3.587 11 O -0.424 6.424 12 N -0.310 5.310 13 C 0.130 3.870 14 C -0.302 4.302 15 C 0.112 3.888 16 C -0.537 4.537 17 H 0.099 0.901 18 C -0.183 4.183 19 N -0.410 5.410 20 Si 0.896 3.104 21 H -0.200 1.200 22 H -0.199 1.199 23 H -0.203 1.203 24 C -0.304 4.304 25 C -0.024 4.024 26 N -0.332 5.332 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.234 0.766 37 H 0.164 0.836 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.859 -8.118 -10.591 16.591 hybrid contribution -0.881 -0.300 -1.149 1.478 sum -10.739 -8.419 -11.739 18.000 Atomic orbital electron populations 1.22095 0.92210 1.03595 1.03841 1.22032 0.96674 0.97723 0.85141 0.87324 1.25123 0.73244 0.92288 0.86036 1.90451 1.32458 1.71595 1.36893 1.22310 1.03916 0.93596 1.00735 1.21858 1.01255 1.01035 0.92693 1.21415 1.00802 0.77842 0.99973 1.47411 1.63786 1.07393 1.17851 1.15639 0.79121 0.81561 0.82419 1.90873 1.49984 1.67441 1.34085 1.42391 1.54962 1.04475 1.29160 1.17712 0.93693 0.89563 0.86015 1.22423 1.13077 1.02588 0.92144 1.17850 0.88639 0.90431 0.91878 1.20616 1.12893 1.18491 1.01681 0.90132 1.27116 0.91411 0.91340 1.08433 1.70383 1.26637 1.28651 1.15285 0.83545 0.76944 0.77947 0.71968 1.19980 1.19869 1.20284 1.21717 1.12559 0.97039 0.99109 1.21271 0.94252 0.97152 0.89771 1.66588 1.22751 1.07758 1.36129 0.90454 0.90754 0.91159 0.87983 0.89000 0.89071 0.90753 0.87610 0.91006 0.76640 0.83621 0.88643 0.87134 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.31 37.15 0.35 -0.84 16 2 C 0.09 0.95 3.04 -68.31 -0.21 0.74 16 3 H 0.11 1.26 5.94 -51.93 -0.31 0.95 16 4 C 0.36 3.87 6.18 -28.34 -0.18 3.70 16 5 O -0.44 -6.28 17.90 5.99 0.11 -6.18 16 6 C -0.17 -1.24 6.01 -27.46 -0.17 -1.40 16 7 C -0.13 -1.02 6.07 -26.81 -0.16 -1.19 16 8 C 0.12 1.21 6.05 -4.04 -0.02 1.19 16 9 N -0.62 -8.03 2.67 -172.08 -0.46 -8.48 16 10 C 0.71 12.98 8.20 -86.91 -0.71 12.27 16 11 O -0.55 -12.15 12.42 5.30 0.07 -12.09 16 12 N -0.66 -12.72 5.28 -15.86 -0.08 -12.81 16 13 C 0.35 8.51 7.52 -154.67 -1.16 7.35 16 14 C -0.28 -7.34 8.69 -38.45 -0.33 -7.67 16 15 C 0.12 3.31 5.29 -106.55 -0.56 2.75 16 16 C -0.51 -13.82 9.03 -37.65 -0.34 -14.16 16 17 H 0.08 2.17 7.98 -52.48 -0.42 1.75 16 18 C 0.04 1.04 4.93 -17.34 -0.09 0.95 16 19 N -0.79 -21.02 12.46 55.55 0.69 -20.33 16 20 Si 1.07 21.68 30.01 -169.99 -5.10 16.58 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 24 C -0.28 -7.26 8.03 -39.07 -0.31 -7.58 16 25 C 0.13 3.05 11.10 -18.05 -0.20 2.85 16 26 N -0.61 -14.76 10.36 -12.75 -0.13 -14.89 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.41 7.11 -51.93 -0.37 0.04 16 30 H 0.10 0.49 7.87 -51.93 -0.41 0.08 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.11 1.26 6.98 -51.93 -0.36 0.90 16 35 H 0.07 0.52 7.53 -51.92 -0.39 0.13 16 36 H 0.40 6.44 6.49 -40.82 -0.26 6.18 16 37 H 0.15 3.97 5.15 -53.00 -0.27 3.69 16 38 H 0.30 8.33 6.77 -40.82 -0.28 8.05 16 39 H 0.11 2.88 6.72 -52.48 -0.35 2.52 16 40 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 329.16 15.07 4.96 4.96 Total: -1.00 -33.10 329.16 -8.81 -41.91 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -4.76 Total: 12.38 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -4.10 Total: -1.05 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.02 Total: -56.52 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.17 Total: -18.26 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.10 Total: 16.58 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.10 -8.81 -41.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932162781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.647 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds