Wall clock time and date at job start Tue Mar 31 2020 08:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.82214 * 2 1 4 4 C 1.51496 * 109.82551 * 239.05159 * 2 1 3 5 5 O 1.20769 * 121.01941 * 106.64992 * 4 2 1 6 6 C 1.51319 * 117.95951 * 286.62180 * 4 2 1 7 7 C 1.53230 * 108.65591 * 307.40616 * 6 4 2 8 8 C 1.52623 * 109.49825 * 56.04506 * 7 6 4 9 9 N 1.46865 * 109.53729 * 301.85925 * 8 7 6 10 10 C 1.34780 * 120.71284 * 237.05193 * 9 8 7 11 11 O 1.21571 * 120.00010 * 5.28819 * 10 9 8 12 12 N 1.34778 * 119.99456 * 185.28266 * 10 9 8 13 13 C 1.39468 * 119.99610 * 183.98146 * 12 10 9 14 14 C 1.38649 * 119.64673 * 339.59165 * 13 12 10 15 15 C 1.40818 * 118.67025 * 180.22673 * 14 13 12 16 16 C 1.41548 * 120.99687 * 179.75262 * 15 14 13 17 17 H 1.08006 * 120.00040 * 333.74205 * 16 15 14 18 18 C 1.40031 * 120.00296 * 153.73738 * 16 15 14 19 19 N 1.30748 * 119.99795 * 332.90584 * 18 16 15 20 20 Si 1.86793 * 119.99972 * 152.90402 * 18 16 15 21 21 H 1.48494 * 109.47372 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47022 * 240.00064 * 20 18 16 23 23 H 1.48505 * 109.47125 * 120.00342 * 20 18 16 24 24 C 1.41161 * 118.00670 * 359.47905 * 15 14 13 25 25 C 1.36590 * 119.12658 * 0.27661 * 24 15 14 26 26 N 1.32068 * 121.26015 * 359.97421 * 25 24 15 27 27 H 1.09001 * 109.47279 * 299.12634 * 1 2 3 28 28 H 1.08996 * 109.47484 * 59.12383 * 1 2 3 29 29 H 1.08997 * 109.47332 * 179.12879 * 1 2 3 30 30 H 1.09006 * 109.60553 * 67.16014 * 6 4 2 31 31 H 1.09001 * 109.60863 * 187.65578 * 6 4 2 32 32 H 1.08993 * 109.48293 * 176.16253 * 7 6 4 33 33 H 1.09003 * 109.47738 * 296.18579 * 7 6 4 34 34 H 1.09003 * 109.40260 * 181.81953 * 8 7 6 35 35 H 1.09008 * 109.34056 * 61.86144 * 8 7 6 36 36 H 0.96998 * 120.00760 * 3.98550 * 12 10 9 37 37 H 1.07994 * 120.66415 * 359.97438 * 14 13 12 38 38 H 0.96995 * 120.00010 * 356.22776 * 19 18 16 39 39 H 1.08009 * 120.43541 * 180.29341 * 24 15 14 40 40 H 1.07999 * 119.36739 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8995 1.0254 0.0000 4 6 2.0437 -0.7329 -1.2223 5 8 2.5338 -0.1319 -2.1481 6 6 1.9247 -2.2412 -1.2472 7 6 2.5502 -2.8035 0.0336 8 6 1.8786 -2.1703 1.2490 9 7 2.0292 -0.7106 1.1885 10 6 2.6169 -0.0369 2.1971 11 8 3.1148 -0.6443 3.1251 12 7 2.6528 1.3103 2.1767 13 6 3.3326 2.0049 3.1769 14 6 3.5987 1.3807 4.3859 15 6 4.2821 2.1028 5.3831 16 6 4.5747 1.5155 6.6374 17 1 3.9543 0.7174 7.0178 18 6 5.6684 1.9691 7.3849 19 7 6.6960 2.5058 6.7802 20 14 5.6595 1.8072 9.2458 21 1 4.3908 1.1701 9.6811 22 1 5.7739 3.1543 9.8603 23 1 6.8070 0.9681 9.6752 24 6 4.6719 3.4280 5.0924 25 6 4.3698 3.9568 3.8697 26 7 3.7227 3.2522 2.9592 27 1 -0.3634 0.5002 0.8977 28 1 -0.3634 0.5273 -0.8820 29 1 -0.3634 -1.0275 -0.0156 30 1 0.8732 -2.5243 -1.2957 31 1 2.4525 -2.6355 -2.1156 32 1 2.4113 -3.8842 0.0619 33 1 3.6156 -2.5735 0.0491 34 1 2.3465 -2.5471 2.1586 35 1 0.8192 -2.4271 1.2508 36 1 2.2057 1.7967 1.4665 37 1 3.2844 0.3624 4.5610 38 1 6.7249 2.5403 5.8113 39 1 5.2023 4.0160 5.8269 40 1 4.6659 4.9704 3.6433 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932162781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:06 Heat of formation + Delta-G solvation = -45.523949 kcal Electronic energy + Delta-G solvation = -24693.588113 eV Core-core repulsion = 21086.691601 eV Total energy + Delta-G solvation = -3606.896511 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28030 -40.94510 -39.94349 -37.82904 -36.71201 -35.64254 -34.06864 -32.50750 -32.25704 -30.48732 -28.21710 -27.62832 -25.51334 -24.32999 -23.77793 -23.03978 -21.92599 -20.34042 -20.05554 -19.11443 -18.21250 -17.26946 -16.86250 -16.72878 -16.66315 -16.33366 -16.25395 -15.81240 -15.71169 -15.51512 -14.91179 -14.78788 -14.52938 -14.29519 -14.06657 -13.71365 -13.54100 -13.37701 -13.08553 -12.89494 -12.77495 -12.55737 -12.20329 -12.02748 -12.01546 -11.79664 -11.66267 -11.15380 -11.00923 -10.74044 -10.17163 -10.09426 -9.84739 -9.38037 -9.01858 -6.70539 0.60919 0.63488 0.83541 1.28944 1.49854 1.62466 1.80986 1.91796 2.29314 2.52749 2.65911 2.79189 3.42885 3.51282 3.77456 3.82544 3.97823 3.99919 4.15246 4.27337 4.42809 4.56241 4.63812 4.64223 4.70537 4.76158 4.81444 4.85003 4.94460 5.04000 5.09766 5.24216 5.25036 5.37467 5.42839 5.48347 5.64566 5.73846 6.06311 6.16902 6.23162 6.56284 6.62660 6.76577 7.29565 7.49068 7.90544 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.003566 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.911715 B = 7849.219801 C = 8464.954673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.083 3.917 3 H 0.093 0.907 4 C 0.362 3.638 5 O -0.484 6.484 6 C -0.159 4.159 7 C -0.122 4.122 8 C 0.113 3.887 9 N -0.610 5.610 10 C 0.705 3.295 11 O -0.593 6.593 12 N -0.656 5.656 13 C 0.361 3.639 14 C -0.306 4.306 15 C 0.097 3.903 16 C -0.540 4.540 17 H 0.071 0.929 18 C 0.009 3.991 19 N -0.800 5.800 20 Si 1.125 2.875 21 H -0.265 1.265 22 H -0.260 1.260 23 H -0.264 1.264 24 C -0.294 4.294 25 C 0.131 3.869 26 N -0.608 5.608 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.143 0.857 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.413 0.587 37 H 0.134 0.866 38 H 0.283 0.717 39 H 0.105 0.895 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.976 -9.715 -12.286 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 H 0.111 0.889 4 C 0.237 3.763 5 O -0.357 6.357 6 C -0.196 4.196 7 C -0.160 4.160 8 C -0.008 4.008 9 N -0.349 5.349 10 C 0.407 3.593 11 O -0.471 6.471 12 N -0.306 5.306 13 C 0.136 3.864 14 C -0.331 4.331 15 C 0.088 3.912 16 C -0.569 4.569 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.422 5.422 20 Si 0.941 3.059 21 H -0.189 1.189 22 H -0.184 1.184 23 H -0.189 1.189 24 C -0.318 4.318 25 C -0.021 4.021 26 N -0.330 5.330 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.161 0.839 31 H 0.118 0.882 32 H 0.146 0.854 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.130 0.870 36 H 0.251 0.749 37 H 0.151 0.849 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.648 -9.148 -11.701 18.875 hybrid contribution -0.412 -0.037 -1.012 1.093 sum -12.060 -9.185 -12.712 19.784 Atomic orbital electron populations 1.22099 0.89056 1.05563 1.04321 1.22280 0.99059 0.96748 0.84116 0.88945 1.25586 0.71627 0.94033 0.85011 1.90452 1.34228 1.72715 1.38317 1.22361 1.06474 0.90314 1.00441 1.21831 0.99292 1.03009 0.91855 1.21782 1.03320 0.75665 1.00048 1.47458 1.61976 1.08581 1.16878 1.15878 0.79198 0.81089 0.83119 1.90840 1.51900 1.68062 1.36296 1.42259 1.54667 1.05079 1.28564 1.17882 0.92629 0.89537 0.86362 1.22451 1.14841 1.02434 0.93414 1.18218 0.89121 0.91419 0.92411 1.20824 1.14010 1.19411 1.02697 0.91042 1.28628 0.90076 0.89690 1.12540 1.70510 1.27320 1.30167 1.14168 0.82920 0.77795 0.78877 0.66286 1.18871 1.18393 1.18894 1.21712 1.13418 0.96596 1.00070 1.21826 0.92883 0.98533 0.88872 1.66805 1.22671 1.07640 1.35860 0.91048 0.89161 0.88511 0.83940 0.88242 0.85412 0.93553 0.90050 0.86962 0.74850 0.84886 0.90479 0.87719 0.82065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.31 71.98 0.67 -1.12 16 2 C 0.08 1.61 3.04 44.36 0.13 1.74 16 3 H 0.09 2.09 5.94 -2.39 -0.01 2.08 16 4 C 0.36 7.04 6.18 29.55 0.18 7.22 16 5 O -0.48 -13.26 17.90 -1.48 -0.03 -13.28 16 6 C -0.16 -1.74 6.01 30.12 0.18 -1.55 16 7 C -0.12 -1.57 6.07 30.55 0.19 -1.39 16 8 C 0.11 2.00 6.05 86.18 0.52 2.52 16 9 N -0.61 -15.11 2.67 -816.60 -2.18 -17.29 16 10 C 0.71 26.26 8.20 179.05 1.47 27.73 16 11 O -0.59 -27.43 12.42 -3.94 -0.05 -27.48 16 12 N -0.66 -25.58 5.28 -322.36 -1.70 -27.28 16 13 C 0.36 17.78 7.52 132.76 1.00 18.78 16 14 C -0.31 -16.95 8.69 23.00 0.20 -16.75 16 15 C 0.10 5.53 5.29 -21.11 -0.11 5.42 16 16 C -0.54 -30.69 9.03 23.52 0.21 -30.48 16 17 H 0.07 4.05 7.98 -2.91 -0.02 4.03 16 18 C 0.01 0.46 4.93 85.29 0.42 0.88 16 19 N -0.80 -43.76 12.46 21.84 0.27 -43.49 16 20 Si 1.13 43.61 30.01 68.60 2.06 45.67 16 21 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 22 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 23 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 24 C -0.29 -15.64 8.03 22.60 0.18 -15.46 16 25 C 0.13 6.24 11.10 84.27 0.94 7.18 16 26 N -0.61 -29.38 10.36 -194.26 -2.01 -31.39 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 0.64 7.11 -2.39 -0.02 0.62 16 30 H 0.14 0.50 7.87 -2.38 -0.02 0.48 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.91 6.98 -2.39 -0.02 1.90 16 35 H 0.11 1.14 7.53 -2.38 -0.02 1.13 16 36 H 0.41 13.33 6.49 -92.71 -0.60 12.73 16 37 H 0.13 7.70 5.15 -11.05 -0.06 7.64 16 38 H 0.28 16.34 6.77 -92.71 -0.63 15.71 16 39 H 0.10 5.61 6.72 -2.91 -0.02 5.59 16 40 H 0.16 6.40 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -76.92 329.16 3.13 -73.79 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: 0.59 Total: 36.04 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 6.18 Total: 4.73 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -5.62 Total: -119.46 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.08 Total: -40.77 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.06 Total: 45.67 kcal Total: -76.92 3.13 -73.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932162781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.263 kcal (2) G-P(sol) polarization free energy of solvation -76.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds