Wall clock time and date at job start Tue Mar 31 2020 08:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47298 * 2 1 4 4 N 1.46501 * 109.46706 * 239.99633 * 2 1 3 5 5 C 1.34784 * 119.99441 * 85.00784 * 4 2 1 6 6 O 1.21730 * 119.99848 * 359.97438 * 5 4 2 7 7 C 1.46489 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.37776 * 125.86036 * 179.97438 * 7 5 4 9 9 C 1.39931 * 107.68874 * 180.02562 * 8 7 5 10 10 O 1.35124 * 145.13757 * 180.43623 * 9 8 7 11 11 C 1.34379 * 109.62053 * 179.97438 * 10 9 8 12 12 C 1.34456 * 109.45064 * 359.55925 * 11 10 9 13 13 C 1.39132 * 107.40502 * 359.97438 * 9 8 7 14 14 N 1.37109 * 108.10989 * 0.02562 * 13 9 8 15 15 H 0.96999 * 125.74223 * 179.97438 * 14 13 9 16 16 C 1.53006 * 109.46540 * 120.00349 * 2 1 3 17 17 C 1.53939 * 113.74016 * 282.19093 * 16 2 1 18 18 N 1.47817 * 86.03708 * 222.08819 * 17 16 2 19 19 C 1.36934 * 134.45300 * 204.64349 * 18 17 16 20 20 H 1.08002 * 119.99561 * 182.58821 * 19 18 17 21 21 C 1.38810 * 120.00705 * 2.58822 * 19 18 17 22 22 N 1.31619 * 119.99702 * 353.41512 * 21 19 18 23 23 Si 1.86797 * 120.00225 * 173.41361 * 21 19 18 24 24 H 1.48494 * 109.47296 * 94.97511 * 23 21 19 25 25 H 1.48510 * 109.46934 * 214.97223 * 23 21 19 26 26 H 1.48498 * 109.47060 * 334.97125 * 23 21 19 27 27 C 1.47574 * 91.04867 * 24.55536 * 18 17 16 28 28 H 1.08996 * 109.46824 * 64.48407 * 1 2 3 29 29 H 1.08995 * 109.47767 * 184.48590 * 1 2 3 30 30 H 1.09002 * 109.46776 * 304.49151 * 1 2 3 31 31 H 0.96997 * 120.00117 * 265.00221 * 4 2 1 32 32 H 1.08009 * 126.15232 * 0.02562 * 8 7 5 33 33 H 1.08005 * 125.27178 * 179.82461 * 11 10 9 34 34 H 1.08003 * 126.41850 * 180.24489 * 12 11 10 35 35 H 1.08996 * 112.94603 * 53.78910 * 16 2 1 36 36 H 1.08997 * 113.77583 * 336.35264 * 17 16 2 37 37 H 1.09007 * 113.76792 * 107.75295 * 17 16 2 38 38 H 0.97001 * 120.00023 * 179.97438 * 22 21 19 39 39 H 1.09008 * 113.76763 * 221.15669 * 27 18 17 40 40 H 1.08997 * 113.87923 * 89.76645 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8572 1.1628 -2.4118 7 6 2.6358 -0.7087 -3.5531 8 6 2.8127 -0.1421 -4.7965 9 6 3.2918 -1.1390 -5.6537 10 8 3.6967 -1.4186 -6.9121 11 6 4.0461 -2.7134 -6.9965 12 6 3.8859 -3.2995 -5.7971 13 6 3.4009 -2.3100 -4.9103 14 7 2.9982 -2.0398 -3.6278 15 1 2.9720 -2.6761 -2.8962 16 6 2.0399 -0.7214 1.2493 17 6 1.9659 0.1296 2.5299 18 7 3.3032 -0.4148 2.8462 19 6 4.0102 -0.6101 4.0026 20 1 5.0166 -0.9998 3.9609 21 6 3.4335 -0.3072 5.2284 22 7 2.2602 0.2874 5.2746 23 14 4.3226 -0.7434 6.8122 24 1 5.0967 0.4323 7.2852 25 1 3.3299 -1.1311 7.8465 26 1 5.2478 -1.8781 6.5641 27 6 3.5693 -0.6653 1.4164 28 1 -0.3633 0.4427 -0.9274 29 1 -0.3634 -1.0244 0.0804 30 1 -0.3633 0.5820 0.8470 31 1 2.2489 -1.6318 -1.1526 32 1 2.6168 0.8864 -5.0618 33 1 4.4045 -3.2058 -7.8885 34 1 4.0893 -4.3324 -5.5559 35 1 1.6224 -1.7219 1.3624 36 1 1.9615 1.2036 2.3442 37 1 1.1863 -0.1866 3.2231 38 1 1.8570 0.4987 6.1311 39 1 4.0675 -1.6152 1.2221 40 1 4.0371 0.1736 0.9012 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969779561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:07 Heat of formation + Delta-G solvation = 81.818801 kcal Electronic energy + Delta-G solvation = -23843.851263 eV Core-core repulsion = 20242.476748 eV Total energy + Delta-G solvation = -3601.374515 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.14854 -40.35689 -39.00114 -37.90481 -34.95084 -32.63053 -32.25159 -31.10620 -30.48655 -28.35516 -27.51791 -25.01610 -24.35074 -23.45994 -21.89959 -21.20934 -20.87372 -20.26626 -19.24922 -18.42027 -17.24350 -16.87580 -16.48625 -16.23032 -15.61360 -15.08811 -14.82935 -14.69118 -14.12924 -13.83972 -13.81056 -13.56619 -13.53984 -13.10776 -13.05999 -12.35982 -12.11884 -11.98609 -11.64799 -11.43123 -11.29809 -10.94922 -10.71502 -10.42152 -10.32580 -10.30000 -9.87377 -9.81271 -9.49668 -9.02923 -8.84560 -8.77203 -8.09743 -6.92025 -5.80499 -3.11588 0.78931 2.02331 2.25601 2.43483 2.65512 3.18732 3.25125 3.36983 3.42033 3.44209 4.31363 4.42210 4.51608 4.74719 5.02051 5.05311 5.10945 5.24488 5.27420 5.34772 5.49264 5.54223 5.59003 5.76111 5.85830 5.91822 6.00503 6.07004 6.19605 6.29297 6.34005 6.39601 6.49083 6.57713 6.72146 6.90133 7.04467 7.17977 7.32346 7.45735 7.51953 7.94874 8.10264 9.01524 9.67999 10.56675 11.37182 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.002737 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.931866 B =10227.562550 C =10911.300745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.092 0.908 4 N -0.715 5.715 5 C 0.587 3.413 6 O -0.522 6.522 7 C 0.013 3.987 8 C -0.083 4.083 9 C -0.040 4.040 10 O -0.169 6.169 11 C 0.009 3.991 12 C -0.202 4.202 13 C 0.009 3.991 14 N -0.531 5.531 15 H 0.421 0.579 16 C -0.148 4.148 17 C 0.176 3.824 18 N -0.612 5.612 19 C -0.225 4.225 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.125 3.875 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.393 0.607 32 H 0.161 0.839 33 H 0.211 0.789 34 H 0.153 0.847 35 H 0.089 0.911 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.254 0.746 39 H 0.039 0.961 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 -8.006 -22.489 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 H 0.110 0.890 4 N -0.364 5.364 5 C 0.373 3.627 6 O -0.398 6.398 7 C -0.100 4.100 8 C -0.110 4.110 9 C -0.092 4.092 10 O -0.067 6.067 11 C -0.059 4.059 12 C -0.223 4.223 13 C -0.104 4.104 14 N -0.135 5.135 15 H 0.259 0.741 16 C -0.168 4.168 17 C 0.051 3.949 18 N -0.338 5.338 19 C -0.352 4.352 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.567 5.567 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.002 4.002 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.226 0.774 32 H 0.178 0.822 33 H 0.228 0.772 34 H 0.171 0.829 35 H 0.107 0.893 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.830 -6.987 -22.217 23.305 hybrid contribution 0.735 -1.206 1.319 1.932 sum -0.095 -8.193 -20.898 22.447 Atomic orbital electron populations 1.22119 0.95122 1.02010 1.02411 1.21205 0.93999 0.97598 0.82504 0.88991 1.46033 1.66885 1.13667 1.09860 1.16834 0.78083 0.86295 0.81500 1.90884 1.50281 1.14423 1.84208 1.20414 1.10692 0.82914 0.95975 1.19907 1.04792 0.98533 0.87776 1.19295 1.10057 0.96507 0.83331 1.84028 1.67996 1.27041 1.27586 1.24041 1.01398 0.80992 0.99424 1.20567 1.10356 0.99788 0.91636 1.19024 1.08101 0.97083 0.86206 1.41170 1.54140 1.09476 1.08741 0.74085 1.23870 0.97641 1.00757 0.94521 1.22234 0.89650 0.93996 0.89070 1.46036 1.16072 1.72079 0.99598 1.19023 0.96921 1.36767 0.82538 0.90324 1.24782 0.97310 1.00815 0.97467 1.69820 1.17196 1.45449 1.24272 0.86117 0.78397 0.78045 0.83291 1.21645 1.21553 1.20601 1.22540 0.92998 0.97677 0.86943 0.92626 0.92719 0.90881 0.77379 0.82171 0.77208 0.82895 0.89315 0.95248 0.90773 0.93592 0.94251 0.94943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.43 37.16 0.35 -1.77 16 2 C 0.15 2.21 2.29 -67.92 -0.16 2.06 16 3 H 0.09 1.56 7.49 -51.93 -0.39 1.18 16 4 N -0.71 -8.76 4.95 -55.16 -0.27 -9.03 16 5 C 0.59 8.07 7.74 -12.93 -0.10 7.97 16 6 O -0.52 -8.97 16.53 5.16 0.09 -8.89 16 7 C 0.01 0.15 7.03 -81.86 -0.58 -0.42 16 8 C -0.08 -1.02 10.58 -39.12 -0.41 -1.43 16 9 C -0.04 -0.48 8.20 -38.62 -0.32 -0.80 16 10 O -0.17 -1.81 10.68 3.19 0.03 -1.77 16 11 C 0.01 0.07 12.02 29.40 0.35 0.42 16 12 C -0.20 -1.60 10.89 -39.70 -0.43 -2.03 16 13 C 0.01 0.10 8.11 -83.95 -0.68 -0.58 16 14 N -0.53 -5.13 6.08 -7.04 -0.04 -5.18 16 15 H 0.42 2.85 8.16 -40.82 -0.33 2.52 16 16 C -0.15 -2.53 3.35 -89.69 -0.30 -2.83 16 17 C 0.18 3.99 7.02 -2.84 -0.02 3.97 16 18 N -0.61 -15.47 3.70 -177.70 -0.66 -16.12 16 19 C -0.22 -6.29 10.69 -15.06 -0.16 -6.45 16 20 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 22 N -0.92 -27.10 11.43 55.49 0.63 -26.46 16 23 Si 0.91 22.02 29.56 -169.99 -5.02 17.00 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.12 2.45 8.38 -2.97 -0.02 2.42 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.39 3.75 7.69 -40.82 -0.31 3.44 16 32 H 0.16 1.84 8.06 -52.48 -0.42 1.41 16 33 H 0.21 0.51 8.06 -52.48 -0.42 0.09 16 34 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 37 H 0.07 1.85 7.20 -51.92 -0.37 1.47 16 38 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 40 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 343.17 15.07 5.17 5.17 Total: -1.00 -34.56 343.17 -7.82 -42.38 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.18 Total: 2.69 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.57 Total: 0.21 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.34 Total: -56.79 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.12 Total: -10.66 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.56 -7.82 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969779561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.199 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds