Wall clock time and date at job start Tue Mar 31 2020 08:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47298 * 2 1 4 4 N 1.46501 * 109.46706 * 239.99633 * 2 1 3 5 5 C 1.34784 * 119.99441 * 85.00784 * 4 2 1 6 6 O 1.21730 * 119.99848 * 359.97438 * 5 4 2 7 7 C 1.46489 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.37776 * 125.86036 * 179.97438 * 7 5 4 9 9 C 1.39931 * 107.68874 * 180.02562 * 8 7 5 10 10 O 1.35124 * 145.13757 * 180.43623 * 9 8 7 11 11 C 1.34379 * 109.62053 * 179.97438 * 10 9 8 12 12 C 1.34456 * 109.45064 * 359.55925 * 11 10 9 13 13 C 1.39132 * 107.40502 * 359.97438 * 9 8 7 14 14 N 1.37109 * 108.10989 * 0.02562 * 13 9 8 15 15 H 0.96999 * 125.74223 * 179.97438 * 14 13 9 16 16 C 1.53006 * 109.46540 * 120.00349 * 2 1 3 17 17 C 1.53939 * 113.74016 * 282.19093 * 16 2 1 18 18 N 1.47817 * 86.03708 * 222.08819 * 17 16 2 19 19 C 1.36934 * 134.45300 * 204.64349 * 18 17 16 20 20 H 1.08002 * 119.99561 * 182.58821 * 19 18 17 21 21 C 1.38810 * 120.00705 * 2.58822 * 19 18 17 22 22 N 1.31619 * 119.99702 * 353.41512 * 21 19 18 23 23 Si 1.86797 * 120.00225 * 173.41361 * 21 19 18 24 24 H 1.48494 * 109.47296 * 94.97511 * 23 21 19 25 25 H 1.48510 * 109.46934 * 214.97223 * 23 21 19 26 26 H 1.48498 * 109.47060 * 334.97125 * 23 21 19 27 27 C 1.47574 * 91.04867 * 24.55536 * 18 17 16 28 28 H 1.08996 * 109.46824 * 64.48407 * 1 2 3 29 29 H 1.08995 * 109.47767 * 184.48590 * 1 2 3 30 30 H 1.09002 * 109.46776 * 304.49151 * 1 2 3 31 31 H 0.96997 * 120.00117 * 265.00221 * 4 2 1 32 32 H 1.08009 * 126.15232 * 0.02562 * 8 7 5 33 33 H 1.08005 * 125.27178 * 179.82461 * 11 10 9 34 34 H 1.08003 * 126.41850 * 180.24489 * 12 11 10 35 35 H 1.08996 * 112.94603 * 53.78910 * 16 2 1 36 36 H 1.08997 * 113.77583 * 336.35264 * 17 16 2 37 37 H 1.09007 * 113.76792 * 107.75295 * 17 16 2 38 38 H 0.97001 * 120.00023 * 179.97438 * 22 21 19 39 39 H 1.09008 * 113.76763 * 221.15669 * 27 18 17 40 40 H 1.08997 * 113.87923 * 89.76645 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8572 1.1628 -2.4118 7 6 2.6358 -0.7087 -3.5531 8 6 2.8127 -0.1421 -4.7965 9 6 3.2918 -1.1390 -5.6537 10 8 3.6967 -1.4186 -6.9121 11 6 4.0461 -2.7134 -6.9965 12 6 3.8859 -3.2995 -5.7971 13 6 3.4009 -2.3100 -4.9103 14 7 2.9982 -2.0398 -3.6278 15 1 2.9720 -2.6761 -2.8962 16 6 2.0399 -0.7214 1.2493 17 6 1.9659 0.1296 2.5299 18 7 3.3032 -0.4148 2.8462 19 6 4.0102 -0.6101 4.0026 20 1 5.0166 -0.9998 3.9609 21 6 3.4335 -0.3072 5.2284 22 7 2.2602 0.2874 5.2746 23 14 4.3226 -0.7434 6.8122 24 1 5.0967 0.4323 7.2852 25 1 3.3299 -1.1311 7.8465 26 1 5.2478 -1.8781 6.5641 27 6 3.5693 -0.6653 1.4164 28 1 -0.3633 0.4427 -0.9274 29 1 -0.3634 -1.0244 0.0804 30 1 -0.3633 0.5820 0.8470 31 1 2.2489 -1.6318 -1.1526 32 1 2.6168 0.8864 -5.0618 33 1 4.4045 -3.2058 -7.8885 34 1 4.0893 -4.3324 -5.5559 35 1 1.6224 -1.7219 1.3624 36 1 1.9615 1.2036 2.3442 37 1 1.1863 -0.1866 3.2231 38 1 1.8570 0.4987 6.1311 39 1 4.0675 -1.6152 1.2221 40 1 4.0371 0.1736 0.9012 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969779561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:06 Heat of formation + Delta-G solvation = 57.500863 kcal Electronic energy + Delta-G solvation = -23844.905768 eV Core-core repulsion = 20242.476748 eV Total energy + Delta-G solvation = -3602.429020 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.89024 -41.38938 -40.17584 -39.27339 -36.29915 -34.19523 -33.31700 -32.26515 -31.46489 -29.45209 -29.09139 -26.62999 -25.83616 -24.73494 -22.70322 -22.53896 -21.70128 -21.39803 -20.61477 -19.33546 -18.78973 -18.07829 -17.47612 -17.24463 -16.88220 -16.47129 -16.15649 -15.85901 -15.72986 -15.09058 -14.84166 -14.75072 -14.48804 -14.29415 -14.04430 -13.64290 -13.42004 -13.24078 -13.09890 -12.99823 -12.75750 -12.69227 -12.39320 -12.08513 -11.82625 -11.63942 -11.30807 -11.17368 -11.05070 -10.83105 -10.20551 -9.63657 -8.94409 -8.87018 -7.92678 -5.24959 -0.04345 1.22433 1.45106 1.46425 1.51473 1.55884 1.71241 1.76962 2.23275 2.28384 2.46395 3.28658 3.36104 3.59559 3.66788 3.82566 3.94271 3.98995 4.24039 4.33179 4.42511 4.51125 4.56644 4.72064 4.74635 4.78487 4.80736 4.85335 4.94038 5.04513 5.07240 5.23981 5.30671 5.39214 5.46341 5.53608 5.57854 5.63496 5.92615 6.16376 6.32294 6.49456 6.90815 7.05580 7.59557 8.55104 9.24844 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.002737 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.931866 B =10227.562550 C =10911.300745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.067 0.933 4 N -0.701 5.701 5 C 0.592 3.408 6 O -0.563 6.563 7 C -0.002 4.002 8 C -0.094 4.094 9 C -0.077 4.077 10 O -0.187 6.187 11 C 0.027 3.973 12 C -0.214 4.214 13 C 0.014 3.986 14 N -0.517 5.517 15 H 0.435 0.565 16 C -0.108 4.108 17 C 0.170 3.830 18 N -0.644 5.644 19 C -0.238 4.238 20 H 0.082 0.918 21 C -0.067 4.067 22 N -0.953 5.953 23 Si 0.978 3.022 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.266 1.266 27 C 0.125 3.875 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.410 0.590 32 H 0.156 0.844 33 H 0.258 0.742 34 H 0.183 0.817 35 H 0.109 0.891 36 H 0.012 0.988 37 H 0.047 0.953 38 H 0.249 0.751 39 H 0.063 0.937 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 -10.848 -24.131 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.085 0.915 4 N -0.352 5.352 5 C 0.380 3.620 6 O -0.442 6.442 7 C -0.114 4.114 8 C -0.122 4.122 9 C -0.128 4.128 10 O -0.085 6.085 11 C -0.040 4.040 12 C -0.235 4.235 13 C -0.101 4.101 14 N -0.123 5.123 15 H 0.276 0.724 16 C -0.128 4.128 17 C 0.044 3.956 18 N -0.370 5.370 19 C -0.366 4.366 20 H 0.100 0.900 21 C -0.260 4.260 22 N -0.602 5.602 23 Si 0.806 3.194 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.191 1.191 27 C 0.001 3.999 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.246 0.754 32 H 0.174 0.826 33 H 0.274 0.726 34 H 0.200 0.800 35 H 0.127 0.873 36 H 0.030 0.970 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.134 -9.882 -23.873 25.838 hybrid contribution 0.513 -0.353 1.662 1.775 sum 0.647 -10.236 -22.211 24.465 Atomic orbital electron populations 1.22059 0.93732 1.03205 1.02092 1.20849 0.94935 0.96106 0.82343 0.91509 1.45745 1.66445 1.14307 1.08662 1.16960 0.77309 0.85763 0.81999 1.90864 1.52175 1.16271 1.84878 1.19954 1.12445 0.83991 0.95042 1.20023 1.04867 0.98830 0.88494 1.19415 1.11904 0.97119 0.84374 1.84030 1.68408 1.29016 1.27094 1.25096 0.98598 0.79449 1.00864 1.21012 1.10637 1.00806 0.91090 1.19522 1.06916 0.97465 0.86197 1.41053 1.53315 1.08777 1.09121 0.72421 1.23457 0.95924 1.00504 0.92886 1.22146 0.88204 0.93826 0.91374 1.46478 1.17036 1.72347 1.01152 1.19429 0.97303 1.35911 0.83948 0.89978 1.25632 0.98315 1.01349 1.00676 1.70005 1.18747 1.46894 1.24513 0.85072 0.77278 0.77924 0.79102 1.21742 1.21814 1.19061 1.22696 0.94889 0.98487 0.83869 0.92672 0.90658 0.91604 0.75386 0.82618 0.72585 0.79962 0.87309 0.96983 0.93506 0.94178 0.91919 0.95100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.43 71.98 0.68 -3.26 16 2 C 0.16 4.66 2.29 44.99 0.10 4.76 16 3 H 0.07 2.31 7.49 -2.39 -0.02 2.30 16 4 N -0.70 -16.17 4.95 -446.64 -2.21 -18.38 16 5 C 0.59 16.07 7.74 86.39 0.67 16.74 16 6 O -0.56 -19.80 16.53 -4.44 -0.07 -19.87 16 7 C 0.00 -0.04 7.03 40.19 0.28 0.24 16 8 C -0.09 -2.35 10.58 22.57 0.24 -2.11 16 9 C -0.08 -1.79 8.20 22.89 0.19 -1.60 16 10 O -0.19 -3.70 10.68 -11.49 -0.12 -3.83 16 11 C 0.03 0.29 12.02 66.95 0.80 1.09 16 12 C -0.21 -2.65 10.89 22.20 0.24 -2.40 16 13 C 0.01 0.26 8.11 39.32 0.32 0.58 16 14 N -0.52 -9.01 6.08 -176.19 -1.07 -10.09 16 15 H 0.43 4.71 8.16 -92.71 -0.76 3.96 16 16 C -0.11 -3.58 3.35 -10.13 -0.03 -3.61 16 17 C 0.17 7.89 7.02 86.44 0.61 8.50 16 18 N -0.64 -32.67 3.70 -716.12 -2.65 -35.32 16 19 C -0.24 -13.33 10.69 84.03 0.90 -12.43 16 20 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 21 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 22 N -0.95 -57.49 11.43 21.65 0.25 -57.24 16 23 Si 0.98 45.59 29.56 68.60 2.03 47.62 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 C 0.13 4.78 8.38 86.49 0.73 5.51 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.41 6.73 7.69 -92.71 -0.71 6.02 16 32 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 33 H 0.26 -0.06 8.06 -2.91 -0.02 -0.08 16 34 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 35 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.01 0.60 8.04 -2.39 -0.02 0.58 16 37 H 0.05 2.41 7.20 -2.38 -0.02 2.39 16 38 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 39 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.03 1.22 8.10 -2.39 -0.02 1.20 16 Total: -1.00 -77.38 343.17 1.95 -75.43 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -0.38 Total: 13.02 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 6.19 Total: 8.66 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -5.69 Total: -121.03 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.20 Total: -23.70 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -77.38 1.95 -75.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969779561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.933 kcal (2) G-P(sol) polarization free energy of solvation -77.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds