Wall clock time and date at job start Tue Mar 31 2020 08:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.87582 * 2 1 4 4 C 1.54333 * 109.87959 * 121.17390 * 2 1 3 5 5 H 1.09002 * 110.71738 * 23.24914 * 4 2 1 6 6 N 1.46493 * 110.71903 * 259.97485 * 4 2 1 7 7 C 1.36934 * 120.00092 * 155.00016 * 6 4 2 8 8 H 1.08003 * 120.00021 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00382 * 179.97438 * 7 6 4 10 10 N 1.31620 * 120.00395 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 120.00039 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47090 * 89.99549 * 11 9 7 13 13 H 1.48495 * 109.47209 * 210.00352 * 11 9 7 14 14 H 1.48508 * 109.46585 * 329.99781 * 11 9 7 15 15 C 1.55153 * 102.94002 * 141.60770 * 4 2 1 16 16 C 1.55121 * 101.48962 * 324.33474 * 15 4 2 17 17 N 1.47019 * 109.88433 * 238.97800 * 2 1 3 18 18 C 1.34785 * 125.64401 * 61.60998 * 17 2 1 19 19 O 1.21724 * 120.00033 * 5.64445 * 18 17 2 20 20 C 1.46494 * 119.99584 * 185.64275 * 18 17 2 21 21 C 1.37780 * 125.85213 * 186.91104 * 20 18 17 22 22 C 1.39944 * 107.68339 * 179.97438 * 21 20 18 23 23 O 1.35120 * 145.13990 * 179.97438 * 22 21 20 24 24 C 1.34379 * 109.62393 * 180.02562 * 23 22 21 25 25 C 1.34469 * 109.44620 * 359.97438 * 24 23 22 26 26 C 1.39133 * 107.40442 * 359.97438 * 22 21 20 27 27 N 1.37117 * 108.11184 * 0.02562 * 26 22 21 28 28 H 0.96997 * 125.74405 * 180.26938 * 27 26 22 29 29 H 1.08992 * 109.47206 * 179.55951 * 1 2 3 30 30 H 1.08994 * 109.47124 * 299.56447 * 1 2 3 31 31 H 1.09005 * 109.46784 * 59.56356 * 1 2 3 32 32 H 0.97004 * 120.00271 * 334.99990 * 6 4 2 33 33 H 0.97001 * 120.00501 * 179.97438 * 10 9 7 34 34 H 1.09004 * 111.00097 * 82.57394 * 15 4 2 35 35 H 1.09008 * 111.00194 * 206.38458 * 15 4 2 36 36 H 1.09002 * 110.49612 * 278.45158 * 16 15 4 37 37 H 1.09000 * 110.34510 * 156.06003 * 16 15 4 38 38 H 1.07995 * 126.15928 * 359.97438 * 21 20 18 39 39 H 1.07992 * 125.27310 * 180.02562 * 24 23 22 40 40 H 1.08000 * 126.41258 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7513 1.2418 5 1 1.3051 -1.4482 1.6163 6 7 2.4554 0.1928 2.2878 7 6 2.4581 -0.1995 3.5998 8 1 2.1645 -1.2048 3.8634 9 6 2.8381 0.6949 4.5909 10 7 2.8402 0.3180 5.8520 11 14 3.3453 2.4341 4.1352 12 1 2.1507 3.3163 4.1436 13 1 4.3374 2.9346 5.1202 14 1 3.9509 2.4338 2.7792 15 6 3.2875 -1.5153 0.6904 16 6 2.8100 -1.8816 -0.7393 17 7 2.0301 -0.7125 -1.1848 18 6 1.8075 -0.3587 -2.4662 19 8 1.2295 0.6824 -2.7185 20 6 2.2613 -1.2271 -3.5552 21 6 2.2194 -0.9254 -4.8989 22 6 2.7459 -2.0182 -5.5966 23 8 3.0454 -2.5144 -6.8172 24 6 3.5753 -3.7425 -6.6876 25 6 3.6322 -4.0702 -5.3847 26 6 3.1047 -2.9787 -4.6562 27 7 2.8056 -2.4887 -3.4110 28 1 2.9551 -2.9486 -2.5701 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3633 0.5070 0.8938 31 1 -0.3633 0.5206 -0.8861 32 1 2.7187 1.0960 2.0512 33 1 3.1061 0.9429 6.5446 34 1 4.1654 -0.8698 0.6593 35 1 3.4855 -2.4126 1.2769 36 1 2.1801 -2.7709 -0.7152 37 1 3.6656 -2.0394 -1.3958 38 1 1.8472 -0.0102 -5.3351 39 1 3.9051 -4.3686 -7.5033 40 1 4.0102 -4.9939 -4.9720 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986320752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:05 Heat of formation + Delta-G solvation = 60.475315 kcal Electronic energy + Delta-G solvation = -24451.116955 eV Core-core repulsion = 20848.816916 eV Total energy + Delta-G solvation = -3602.300038 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.15376 -40.61842 -39.04651 -37.55259 -34.44139 -32.62145 -31.99992 -31.28213 -30.68667 -29.92515 -28.25325 -25.58654 -24.31796 -23.00317 -22.18795 -21.43379 -20.93048 -20.38021 -19.50603 -17.91445 -17.68465 -17.32053 -16.58211 -16.29116 -15.66092 -15.37326 -14.80601 -14.57285 -14.15187 -13.88753 -13.76295 -13.61590 -13.32951 -13.11176 -12.96417 -12.81534 -12.44162 -12.20852 -12.03692 -11.86989 -11.43037 -11.33223 -10.98595 -10.78280 -10.49163 -10.32032 -10.19731 -10.06622 -9.70446 -9.06861 -8.83458 -8.74575 -8.07467 -7.43789 -5.89123 -3.27366 0.79539 2.01650 2.28623 2.44377 2.57260 3.03132 3.20661 3.31438 3.34917 3.40216 4.27767 4.34173 4.49003 4.62641 4.67192 4.92565 4.94437 5.03447 5.11696 5.20262 5.26371 5.31801 5.48732 5.51928 5.55902 5.64716 5.73399 5.85265 5.86799 6.03113 6.07703 6.20505 6.30732 6.35661 6.42995 6.51602 6.65569 6.91073 7.06867 7.41193 7.83432 8.02066 8.28949 9.05027 9.77663 9.95214 11.28322 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.029792 B = 0.003170 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.635384 B = 8830.231382 C = 9210.495253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.124 3.876 3 H 0.079 0.921 4 C 0.183 3.817 5 H 0.079 0.921 6 N -0.737 5.737 7 C -0.252 4.252 8 H 0.093 0.907 9 C 0.011 3.989 10 N -0.929 5.929 11 Si 0.882 3.118 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.276 1.276 15 C -0.152 4.152 16 C 0.082 3.918 17 N -0.607 5.607 18 C 0.602 3.398 19 O -0.522 6.522 20 C 0.016 3.984 21 C -0.084 4.084 22 C -0.040 4.040 23 O -0.169 6.169 24 C 0.009 3.991 25 C -0.202 4.202 26 C 0.005 3.995 27 N -0.534 5.534 28 H 0.423 0.577 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.364 0.636 33 H 0.261 0.739 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.160 0.840 39 H 0.212 0.788 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 -9.816 -22.549 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 H 0.097 0.903 4 C 0.071 3.929 5 H 0.097 0.903 6 N -0.378 5.378 7 C -0.381 4.381 8 H 0.110 0.890 9 C -0.186 4.186 10 N -0.575 5.575 11 Si 0.712 3.288 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.194 4.194 16 C -0.041 4.041 17 N -0.341 5.341 18 C 0.390 3.610 19 O -0.398 6.398 20 C -0.096 4.096 21 C -0.111 4.111 22 C -0.091 4.091 23 O -0.067 6.067 24 C -0.059 4.059 25 C -0.223 4.223 26 C -0.108 4.108 27 N -0.143 5.143 28 H 0.267 0.733 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.198 0.802 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.178 0.822 39 H 0.228 0.772 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.710 -9.223 -22.575 24.397 hybrid contribution 0.739 0.647 0.277 1.021 sum 1.449 -8.576 -22.298 23.934 Atomic orbital electron populations 1.22068 0.94302 1.02067 1.03010 1.22043 0.94883 0.96971 0.84026 0.90266 1.21210 0.93775 0.91376 0.86530 0.90305 1.42692 1.80650 1.11161 1.03315 1.19011 1.39310 0.99125 0.80684 0.88967 1.24664 1.01038 0.97823 0.95049 1.69691 1.53564 1.35349 0.98925 0.86598 0.78558 0.86128 0.77518 1.20811 1.21589 1.20256 1.23599 1.01361 1.02325 0.92074 1.22680 0.94483 0.88793 0.98183 1.48448 1.52210 1.28540 1.04899 1.16459 0.79657 0.84707 0.80168 1.90867 1.42600 1.23489 1.82835 1.20284 1.08475 0.86610 0.94268 1.19868 1.05134 0.97781 0.88346 1.19289 1.09892 0.97932 0.82032 1.84021 1.65845 1.28747 1.28064 1.24040 0.99461 0.84676 0.97699 1.20568 1.10098 0.99516 0.92139 1.19100 1.07959 0.97905 0.85827 1.41943 1.51215 1.14298 1.06810 0.73332 0.92708 0.90697 0.91898 0.80248 0.92847 0.90356 0.89707 0.91114 0.91285 0.82202 0.77196 0.82882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.11 37.16 0.34 -2.02 16 2 C 0.12 1.98 3.18 -66.95 -0.21 1.76 16 3 H 0.08 1.39 7.72 -51.93 -0.40 0.99 16 4 C 0.18 3.14 3.14 -66.10 -0.21 2.93 16 5 H 0.08 1.37 7.80 -51.93 -0.41 0.96 16 6 N -0.74 -16.10 5.03 -51.65 -0.26 -16.36 16 7 C -0.25 -6.62 10.44 -15.06 -0.16 -6.78 16 8 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 9 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 10 N -0.93 -28.04 13.97 55.49 0.78 -27.27 16 11 Si 0.88 21.37 27.74 -169.99 -4.71 16.65 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 15 C -0.15 -2.19 6.78 -24.47 -0.17 -2.35 16 16 C 0.08 0.93 5.24 -2.42 -0.01 0.92 16 17 N -0.61 -8.57 3.06 -164.47 -0.50 -9.08 16 18 C 0.60 9.09 7.55 -12.93 -0.10 9.00 16 19 O -0.52 -9.37 16.13 5.17 0.08 -9.29 16 20 C 0.02 0.21 6.80 -81.86 -0.56 -0.34 16 21 C -0.08 -1.08 10.59 -39.11 -0.41 -1.50 16 22 C -0.04 -0.50 8.20 -38.61 -0.32 -0.81 16 23 O -0.17 -1.86 10.68 3.20 0.03 -1.82 16 24 C 0.01 0.07 12.02 29.40 0.35 0.42 16 25 C -0.20 -1.68 10.89 -39.70 -0.43 -2.11 16 26 C 0.01 0.06 8.11 -83.95 -0.68 -0.62 16 27 N -0.53 -5.84 5.44 -7.04 -0.04 -5.88 16 28 H 0.42 3.72 5.30 -40.82 -0.22 3.50 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.98 7.07 -51.93 -0.37 0.61 16 32 H 0.36 8.03 5.43 -40.82 -0.22 7.80 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 36 H 0.07 0.66 7.84 -51.93 -0.41 0.25 16 37 H 0.07 0.67 6.18 -51.93 -0.32 0.35 16 38 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.21 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 330.76 15.07 4.98 4.98 Total: -1.00 -32.81 330.76 -7.19 -40.00 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.89 Total: 9.34 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.66 Total: -1.29 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.03 Total: -58.58 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.12 Total: -11.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.65 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.81 -7.19 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986320752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.476 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds