Wall clock time and date at job start Tue Mar 31 2020 08:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.87582 * 2 1 4 4 C 1.54333 * 109.87959 * 121.17390 * 2 1 3 5 5 H 1.09002 * 110.71738 * 23.24914 * 4 2 1 6 6 N 1.46493 * 110.71903 * 259.97485 * 4 2 1 7 7 C 1.36934 * 120.00092 * 155.00016 * 6 4 2 8 8 H 1.08003 * 120.00021 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00382 * 179.97438 * 7 6 4 10 10 N 1.31620 * 120.00395 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 120.00039 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47090 * 89.99549 * 11 9 7 13 13 H 1.48495 * 109.47209 * 210.00352 * 11 9 7 14 14 H 1.48508 * 109.46585 * 329.99781 * 11 9 7 15 15 C 1.55153 * 102.94002 * 141.60770 * 4 2 1 16 16 C 1.55121 * 101.48962 * 324.33474 * 15 4 2 17 17 N 1.47019 * 109.88433 * 238.97800 * 2 1 3 18 18 C 1.34785 * 125.64401 * 61.60998 * 17 2 1 19 19 O 1.21724 * 120.00033 * 5.64445 * 18 17 2 20 20 C 1.46494 * 119.99584 * 185.64275 * 18 17 2 21 21 C 1.37780 * 125.85213 * 186.91104 * 20 18 17 22 22 C 1.39944 * 107.68339 * 179.97438 * 21 20 18 23 23 O 1.35120 * 145.13990 * 179.97438 * 22 21 20 24 24 C 1.34379 * 109.62393 * 180.02562 * 23 22 21 25 25 C 1.34469 * 109.44620 * 359.97438 * 24 23 22 26 26 C 1.39133 * 107.40442 * 359.97438 * 22 21 20 27 27 N 1.37117 * 108.11184 * 0.02562 * 26 22 21 28 28 H 0.96997 * 125.74405 * 180.26938 * 27 26 22 29 29 H 1.08992 * 109.47206 * 179.55951 * 1 2 3 30 30 H 1.08994 * 109.47124 * 299.56447 * 1 2 3 31 31 H 1.09005 * 109.46784 * 59.56356 * 1 2 3 32 32 H 0.97004 * 120.00271 * 334.99990 * 6 4 2 33 33 H 0.97001 * 120.00501 * 179.97438 * 10 9 7 34 34 H 1.09004 * 111.00097 * 82.57394 * 15 4 2 35 35 H 1.09008 * 111.00194 * 206.38458 * 15 4 2 36 36 H 1.09002 * 110.49612 * 278.45158 * 16 15 4 37 37 H 1.09000 * 110.34510 * 156.06003 * 16 15 4 38 38 H 1.07995 * 126.15928 * 359.97438 * 21 20 18 39 39 H 1.07992 * 125.27310 * 180.02562 * 24 23 22 40 40 H 1.08000 * 126.41258 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7513 1.2418 5 1 1.3051 -1.4482 1.6163 6 7 2.4554 0.1928 2.2878 7 6 2.4581 -0.1995 3.5998 8 1 2.1645 -1.2048 3.8634 9 6 2.8381 0.6949 4.5909 10 7 2.8402 0.3180 5.8520 11 14 3.3453 2.4341 4.1352 12 1 2.1507 3.3163 4.1436 13 1 4.3374 2.9346 5.1202 14 1 3.9509 2.4338 2.7792 15 6 3.2875 -1.5153 0.6904 16 6 2.8100 -1.8816 -0.7393 17 7 2.0301 -0.7125 -1.1848 18 6 1.8075 -0.3587 -2.4662 19 8 1.2295 0.6824 -2.7185 20 6 2.2613 -1.2271 -3.5552 21 6 2.2194 -0.9254 -4.8989 22 6 2.7459 -2.0182 -5.5966 23 8 3.0454 -2.5144 -6.8172 24 6 3.5753 -3.7425 -6.6876 25 6 3.6322 -4.0702 -5.3847 26 6 3.1047 -2.9787 -4.6562 27 7 2.8056 -2.4887 -3.4110 28 1 2.9551 -2.9486 -2.5701 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3633 0.5070 0.8938 31 1 -0.3633 0.5206 -0.8861 32 1 2.7187 1.0960 2.0512 33 1 3.1061 0.9429 6.5446 34 1 4.1654 -0.8698 0.6593 35 1 3.4855 -2.4126 1.2769 36 1 2.1801 -2.7709 -0.7152 37 1 3.6656 -2.0394 -1.3958 38 1 1.8472 -0.0102 -5.3351 39 1 3.9051 -4.3686 -7.5033 40 1 4.0102 -4.9939 -4.9720 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986320752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:04 Heat of formation + Delta-G solvation = 37.979114 kcal Electronic energy + Delta-G solvation = -24452.092463 eV Core-core repulsion = 20848.816916 eV Total energy + Delta-G solvation = -3603.275547 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.93644 -41.68989 -40.04147 -38.81282 -36.13045 -33.74331 -33.30673 -32.56166 -31.71184 -31.33342 -29.16798 -27.03455 -25.37063 -24.59028 -23.25580 -22.33401 -21.86652 -21.66461 -20.57708 -19.62635 -18.70296 -18.31851 -17.67189 -17.22368 -16.66314 -16.44906 -16.43122 -15.95027 -15.50291 -14.90370 -14.86294 -14.69477 -14.63374 -14.36345 -14.15869 -13.83486 -13.65588 -13.53693 -13.36842 -13.09374 -12.82877 -12.69073 -12.60103 -12.22130 -12.11757 -11.84011 -11.62872 -11.33308 -11.07882 -10.98915 -9.92550 -9.66487 -9.35702 -8.89203 -8.03444 -5.37813 -0.08890 1.17882 1.38136 1.39918 1.45658 1.49237 1.55071 1.69116 2.12236 2.17870 2.46687 3.23547 3.33890 3.44234 3.55864 3.65293 3.83530 3.94840 4.06210 4.15677 4.24089 4.27716 4.32537 4.44273 4.51162 4.58934 4.71119 4.76237 4.77829 4.95953 5.02211 5.13937 5.16304 5.20227 5.32994 5.44106 5.57464 5.76167 6.13175 6.19945 6.26413 6.34088 6.86640 7.04224 7.78872 7.96106 9.17236 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.029792 B = 0.003170 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.635384 B = 8830.231382 C = 9210.495253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.130 3.870 3 H 0.060 0.940 4 C 0.175 3.825 5 H 0.080 0.920 6 N -0.743 5.743 7 C -0.225 4.225 8 H 0.069 0.931 9 C -0.056 4.056 10 N -0.979 5.979 11 Si 0.944 3.056 12 H -0.282 1.282 13 H -0.297 1.297 14 H -0.257 1.257 15 C -0.145 4.145 16 C 0.088 3.912 17 N -0.606 5.606 18 C 0.603 3.397 19 O -0.560 6.560 20 C -0.003 4.003 21 C -0.090 4.090 22 C -0.075 4.075 23 O -0.186 6.186 24 C 0.030 3.970 25 C -0.215 4.215 26 C 0.012 3.988 27 N -0.524 5.524 28 H 0.432 0.568 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.364 0.636 33 H 0.258 0.742 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.158 0.842 39 H 0.260 0.740 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.110 -11.843 -25.257 27.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.026 3.974 3 H 0.078 0.922 4 C 0.066 3.934 5 H 0.098 0.902 6 N -0.385 5.385 7 C -0.355 4.355 8 H 0.087 0.913 9 C -0.248 4.248 10 N -0.629 5.629 11 Si 0.772 3.228 12 H -0.208 1.208 13 H -0.224 1.224 14 H -0.182 1.182 15 C -0.186 4.186 16 C -0.034 4.034 17 N -0.339 5.339 18 C 0.393 3.607 19 O -0.439 6.439 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.126 4.126 23 O -0.084 6.084 24 C -0.037 4.037 25 C -0.236 4.236 26 C -0.103 4.103 27 N -0.133 5.133 28 H 0.278 0.722 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.197 0.803 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.176 0.824 39 H 0.276 0.724 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.709 -11.290 -25.331 27.786 hybrid contribution 0.428 1.103 0.939 1.510 sum 2.136 -10.187 -24.393 26.521 Atomic orbital electron populations 1.21990 0.93711 1.02786 1.02227 1.21787 0.95292 0.96025 0.84325 0.92167 1.21401 0.95209 0.90922 0.85894 0.90212 1.42688 1.81013 1.12062 1.02720 1.18990 1.36292 0.97771 0.82477 0.91284 1.25358 1.02642 1.01797 0.95014 1.69845 1.56299 1.36688 1.00098 0.85585 0.77942 0.81443 0.77833 1.20799 1.22403 1.18157 1.23416 0.99224 1.01976 0.93939 1.22821 0.95545 0.88650 0.96402 1.48411 1.52241 1.29061 1.04184 1.16664 0.79026 0.84431 0.80551 1.90839 1.44446 1.25217 1.83410 1.19837 1.10654 0.87599 0.93466 1.19989 1.04825 0.98179 0.88808 1.19375 1.11607 0.98469 0.83151 1.84030 1.66401 1.30362 1.27617 1.25120 0.96366 0.83180 0.99057 1.21027 1.10569 0.99978 0.92038 1.19617 1.06761 0.98429 0.85482 1.41800 1.50692 1.13489 1.07344 0.72173 0.91226 0.91441 0.92660 0.80285 0.93347 0.91524 0.88657 0.87993 0.89019 0.82447 0.72439 0.79869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.11 71.98 0.66 -3.76 16 2 C 0.13 4.04 3.18 45.35 0.14 4.19 16 3 H 0.06 2.12 7.72 -2.39 -0.02 2.10 16 4 C 0.18 5.83 3.14 46.18 0.14 5.98 16 5 H 0.08 2.67 7.80 -2.39 -0.02 2.65 16 6 N -0.74 -32.09 5.03 -317.33 -1.60 -33.68 16 7 C -0.22 -11.88 10.44 84.03 0.88 -11.01 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 C -0.06 -3.17 5.50 84.86 0.47 -2.71 16 10 N -0.98 -60.62 13.97 21.65 0.30 -60.32 16 11 Si 0.94 44.61 27.74 68.60 1.90 46.51 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 13 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 14 H -0.26 -11.12 6.52 99.48 0.65 -10.47 16 15 C -0.14 -3.86 6.78 32.06 0.22 -3.64 16 16 C 0.09 1.75 5.24 86.93 0.46 2.21 16 17 N -0.61 -16.26 3.06 -792.46 -2.43 -18.69 16 18 C 0.60 17.88 7.55 86.39 0.65 18.53 16 19 O -0.56 -20.41 16.13 -4.43 -0.07 -20.48 16 20 C 0.00 -0.08 6.80 40.19 0.27 0.19 16 21 C -0.09 -2.30 10.59 22.57 0.24 -2.07 16 22 C -0.08 -1.76 8.20 22.90 0.19 -1.57 16 23 O -0.19 -3.65 10.68 -11.46 -0.12 -3.78 16 24 C 0.03 0.31 12.02 66.96 0.80 1.12 16 25 C -0.22 -2.69 10.89 22.20 0.24 -2.45 16 26 C 0.01 0.23 8.11 39.32 0.32 0.55 16 27 N -0.52 -10.15 5.44 -176.19 -0.96 -11.10 16 28 H 0.43 6.13 5.30 -92.71 -0.49 5.64 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 1.73 7.07 -2.38 -0.02 1.71 16 32 H 0.36 15.75 5.43 -92.71 -0.50 15.25 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.10 1.47 7.84 -2.39 -0.02 1.46 16 37 H 0.09 1.47 6.18 -2.39 -0.01 1.45 16 38 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.26 -0.14 8.06 -2.91 -0.02 -0.16 16 40 H 0.18 1.11 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -73.66 330.76 2.75 -70.92 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.04 Total: 25.06 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 5.68 Total: 5.56 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -4.68 Total: -123.79 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.19 Total: -24.25 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.90 Total: 46.51 kcal Total: -73.66 2.75 -70.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986320752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.895 kcal (2) G-P(sol) polarization free energy of solvation -73.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds