Wall clock time and date at job start Tue Mar 31 2020 08:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08995 * 110.00212 * 2 1 4 4 C 1.54334 * 109.99344 * 238.96013 * 2 1 3 5 5 C 1.55154 * 103.02295 * 218.66394 * 4 2 1 6 6 H 1.09008 * 111.00187 * 153.38017 * 5 4 2 7 7 N 1.46493 * 111.00902 * 277.23435 * 5 4 2 8 8 C 1.36938 * 120.00438 * 198.65088 * 7 5 4 9 9 H 1.08005 * 119.99347 * 0.02562 * 8 7 5 10 10 C 1.38806 * 120.00238 * 179.97438 * 8 7 5 11 11 N 1.31615 * 120.00184 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99923 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47568 * 60.00079 * 12 10 8 14 14 H 1.48507 * 109.47214 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47434 * 299.99831 * 12 10 8 16 16 C 1.54906 * 101.58226 * 35.31089 * 5 4 2 17 17 N 1.47025 * 109.88412 * 121.09454 * 2 1 3 18 18 C 1.34777 * 125.64741 * 298.40096 * 17 2 1 19 19 O 1.21725 * 120.00248 * 1.45481 * 18 17 2 20 20 C 1.46497 * 119.99885 * 181.46627 * 18 17 2 21 21 C 1.37777 * 125.85678 * 171.85569 * 20 18 17 22 22 C 1.39933 * 107.68480 * 180.02562 * 21 20 18 23 23 O 1.35128 * 145.13883 * 179.97438 * 22 21 20 24 24 C 1.34380 * 109.62003 * 179.97438 * 23 22 21 25 25 C 1.34462 * 109.44984 * 0.02562 * 24 23 22 26 26 C 1.39134 * 107.40609 * 359.97438 * 22 21 20 27 27 N 1.37106 * 108.10783 * 0.02562 * 26 22 21 28 28 H 0.97006 * 125.74225 * 180.02562 * 27 26 22 29 29 H 1.09008 * 109.47293 * 300.35832 * 1 2 3 30 30 H 1.09002 * 109.47038 * 60.35799 * 1 2 3 31 31 H 1.08994 * 109.47490 * 180.35684 * 1 2 3 32 32 H 1.09006 * 110.84724 * 100.19629 * 4 2 1 33 33 H 1.09000 * 110.51305 * 336.97968 * 4 2 1 34 34 H 0.97003 * 120.00020 * 18.64557 * 7 5 4 35 35 H 0.97000 * 120.00591 * 180.02562 * 11 10 8 36 36 H 1.08994 * 110.36866 * 204.15207 * 16 5 4 37 37 H 1.08999 * 110.37158 * 81.82045 * 16 5 4 38 38 H 1.07996 * 126.15979 * 0.02562 * 21 20 18 39 39 H 1.08000 * 125.26965 * 180.26166 * 24 23 22 40 40 H 1.08004 * 126.40860 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2427 5 6 3.2863 -1.5183 -0.6914 6 1 3.4807 -2.4156 -1.2791 7 7 4.4699 -0.6562 -0.6463 8 6 5.7188 -1.2116 -0.5632 9 1 5.8312 -2.2853 -0.5313 10 6 6.8402 -0.3946 -0.5209 11 7 6.7032 0.9138 -0.5602 12 14 8.5439 -1.1523 -0.4083 13 1 8.7780 -2.0221 -1.5890 14 1 9.5644 -0.0738 -0.3786 15 1 8.6441 -1.9633 0.8316 16 6 2.8099 -1.8826 0.7368 17 7 2.0300 -0.7140 1.1839 18 6 1.8072 -0.3620 2.4657 19 8 1.1186 0.6091 2.7194 20 6 2.3942 -1.1481 3.5537 21 6 2.3796 -0.8133 4.8901 22 6 3.0449 -1.8264 5.5895 23 8 3.4467 -2.2538 6.8068 24 6 4.0930 -3.4254 6.6831 25 6 4.1259 -3.7840 5.3876 26 6 3.4583 -2.7731 4.6574 27 7 3.0575 -2.3520 3.4157 28 1 3.2130 -2.8209 2.5809 29 1 -0.3634 0.5194 0.8868 30 1 -0.3633 0.5083 -0.8932 31 1 -0.3634 -1.0276 0.0064 32 1 2.3597 -0.0450 -2.0192 33 1 1.3052 -1.4406 -1.6196 34 1 4.3689 0.3081 -0.6753 35 1 7.4868 1.4847 -0.5311 36 1 3.6655 -2.0412 1.3932 37 1 2.1800 -2.7718 0.7115 38 1 1.9348 0.0717 5.3205 39 1 4.5166 -3.9931 7.4984 40 1 4.5778 -4.6766 4.9808 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988910209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:14 Heat of formation + Delta-G solvation = 57.717878 kcal Electronic energy + Delta-G solvation = -25058.026234 eV Core-core repulsion = 21455.606625 eV Total energy + Delta-G solvation = -3602.419609 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.83389 -40.34363 -38.76272 -37.32081 -34.10611 -32.36194 -31.95045 -31.44606 -30.32627 -28.61747 -28.06799 -25.74980 -24.15455 -23.67555 -21.79650 -21.05166 -20.61045 -20.12819 -19.17865 -17.56616 -17.38208 -17.03392 -16.26733 -16.06049 -15.33254 -15.05822 -14.74727 -14.27742 -14.09630 -13.74808 -13.61294 -13.28033 -13.22738 -12.93344 -12.77595 -12.74219 -12.33471 -11.99442 -11.80372 -11.65095 -11.26068 -11.03353 -10.86473 -10.74656 -10.44031 -10.13677 -10.00755 -9.85048 -9.83400 -9.14831 -8.50751 -8.43363 -7.74630 -7.16142 -5.91983 -3.23850 1.12690 2.32363 2.60845 2.77106 2.91061 3.33506 3.36465 3.38236 3.40463 3.54712 4.43939 4.59019 4.64376 4.91747 4.94765 5.08597 5.21600 5.32692 5.34161 5.47109 5.53733 5.55709 5.56871 5.64094 5.75307 5.80351 5.88762 5.97796 6.08788 6.15867 6.26410 6.33463 6.38244 6.41222 6.56982 6.59676 6.79231 7.22373 7.41679 7.52245 7.72250 8.24683 8.32719 9.36737 9.90305 10.24600 11.29514 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.010094 B = 0.005987 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.233462 B = 4675.998472 C = 6704.241474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 H 0.078 0.922 4 C -0.137 4.137 5 C 0.172 3.828 6 H 0.074 0.926 7 N -0.710 5.710 8 C -0.256 4.256 9 H 0.071 0.929 10 C -0.004 4.004 11 N -0.924 5.924 12 Si 0.907 3.093 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.050 3.950 17 N -0.594 5.594 18 C 0.604 3.396 19 O -0.533 6.533 20 C 0.023 3.977 21 C -0.090 4.090 22 C -0.040 4.040 23 O -0.171 6.171 24 C 0.003 3.997 25 C -0.198 4.198 26 C 0.004 3.996 27 N -0.529 5.529 28 H 0.424 0.576 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.387 0.613 35 H 0.259 0.741 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.158 0.842 39 H 0.210 0.790 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.667 -9.429 6.798 15.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 H 0.097 0.903 4 C -0.175 4.175 5 C 0.059 3.941 6 H 0.092 0.908 7 N -0.349 5.349 8 C -0.387 4.387 9 H 0.089 0.911 10 C -0.201 4.201 11 N -0.571 5.571 12 Si 0.738 3.262 13 H -0.211 1.211 14 H -0.215 1.215 15 H -0.212 1.212 16 C -0.077 4.077 17 N -0.326 5.326 18 C 0.393 3.607 19 O -0.410 6.410 20 C -0.090 4.090 21 C -0.117 4.117 22 C -0.092 4.092 23 O -0.069 6.069 24 C -0.065 4.065 25 C -0.220 4.220 26 C -0.110 4.110 27 N -0.138 5.138 28 H 0.271 0.729 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.222 0.778 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.176 0.824 39 H 0.226 0.774 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.903 -8.850 7.068 15.045 hybrid contribution 1.362 -0.578 -0.299 1.510 sum -8.540 -9.427 6.769 14.409 Atomic orbital electron populations 1.22145 0.95059 1.01872 1.02773 1.21531 0.93769 0.96872 0.84123 0.90348 1.23054 0.97952 1.00070 0.96466 1.21287 0.87254 0.94731 0.90790 0.90837 1.42333 1.00116 1.05300 1.87200 1.19123 0.83352 0.91692 1.44520 0.91090 1.24776 0.98036 0.95322 1.01987 1.69644 1.29325 1.02139 1.55958 0.86287 0.84126 0.77938 0.77893 1.21058 1.21531 1.21191 1.23719 0.94228 0.87451 1.02321 1.48269 1.51513 1.28381 1.04465 1.16425 0.80368 0.83598 0.80328 1.90819 1.39647 1.27530 1.83044 1.20244 1.05309 0.89116 0.94333 1.19788 1.04429 0.99011 0.88498 1.19279 1.08146 0.99493 0.82254 1.83995 1.60596 1.33810 1.28481 1.23965 0.98565 0.86195 0.97730 1.20554 1.07963 1.01162 0.92288 1.19101 1.06377 0.99319 0.86163 1.42182 1.45629 1.18694 1.07332 0.72949 0.91298 0.91773 0.92842 0.89422 0.90520 0.77847 0.93142 0.90179 0.92250 0.82420 0.77367 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.10 37.15 0.34 -1.79 16 2 C 0.14 2.17 3.46 -66.95 -0.23 1.94 16 3 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.14 -1.94 6.06 -24.89 -0.15 -2.10 16 5 C 0.17 2.95 3.69 -65.79 -0.24 2.71 16 6 H 0.07 1.19 8.13 -51.92 -0.42 0.77 16 7 N -0.71 -16.23 5.27 -51.35 -0.27 -16.50 16 8 C -0.26 -6.58 9.98 -15.06 -0.15 -6.73 16 9 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 10 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 11 N -0.92 -27.08 13.06 55.49 0.72 -26.35 16 12 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 16 C 0.05 0.78 5.12 -2.53 -0.01 0.76 16 17 N -0.59 -9.97 3.06 -164.60 -0.50 -10.48 16 18 C 0.60 11.09 7.61 -12.93 -0.10 11.00 16 19 O -0.53 -10.82 15.86 5.17 0.08 -10.74 16 20 C 0.02 0.40 6.82 -81.86 -0.56 -0.16 16 21 C -0.09 -1.50 10.59 -39.12 -0.41 -1.91 16 22 C -0.04 -0.65 8.20 -38.61 -0.32 -0.97 16 23 O -0.17 -2.45 10.68 3.18 0.03 -2.42 16 24 C 0.00 0.03 12.02 29.40 0.35 0.39 16 25 C -0.20 -2.42 10.89 -39.70 -0.43 -2.85 16 26 C 0.00 0.06 8.11 -83.96 -0.68 -0.62 16 27 N -0.53 -8.26 5.44 -7.04 -0.04 -8.30 16 28 H 0.42 5.97 5.19 -40.82 -0.21 5.76 16 29 H 0.07 1.04 6.83 -51.92 -0.35 0.69 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.08 0.89 7.84 -51.93 -0.41 0.48 16 34 H 0.39 9.77 7.82 -40.82 -0.32 9.45 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.08 1.38 5.55 -51.93 -0.29 1.09 16 37 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 38 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 39 H 0.21 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 333.73 15.07 5.03 5.03 Total: -1.00 -32.21 333.73 -7.59 -39.80 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -4.93 Total: 13.94 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.69 Total: -0.53 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -0.09 Total: -61.63 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.12 Total: -13.15 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.21 -7.59 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988910209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.514 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds