Wall clock time and date at job start Tue Mar 31 2020 08:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08995 * 110.00212 * 2 1 4 4 C 1.54334 * 109.99344 * 238.96013 * 2 1 3 5 5 C 1.55154 * 103.02295 * 218.66394 * 4 2 1 6 6 H 1.09008 * 111.00187 * 153.38017 * 5 4 2 7 7 N 1.46493 * 111.00902 * 277.23435 * 5 4 2 8 8 C 1.36938 * 120.00438 * 198.65088 * 7 5 4 9 9 H 1.08005 * 119.99347 * 0.02562 * 8 7 5 10 10 C 1.38806 * 120.00238 * 179.97438 * 8 7 5 11 11 N 1.31615 * 120.00184 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99923 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47568 * 60.00079 * 12 10 8 14 14 H 1.48507 * 109.47214 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47434 * 299.99831 * 12 10 8 16 16 C 1.54906 * 101.58226 * 35.31089 * 5 4 2 17 17 N 1.47025 * 109.88412 * 121.09454 * 2 1 3 18 18 C 1.34777 * 125.64741 * 298.40096 * 17 2 1 19 19 O 1.21725 * 120.00248 * 1.45481 * 18 17 2 20 20 C 1.46497 * 119.99885 * 181.46627 * 18 17 2 21 21 C 1.37777 * 125.85678 * 171.85569 * 20 18 17 22 22 C 1.39933 * 107.68480 * 180.02562 * 21 20 18 23 23 O 1.35128 * 145.13883 * 179.97438 * 22 21 20 24 24 C 1.34380 * 109.62003 * 179.97438 * 23 22 21 25 25 C 1.34462 * 109.44984 * 0.02562 * 24 23 22 26 26 C 1.39134 * 107.40609 * 359.97438 * 22 21 20 27 27 N 1.37106 * 108.10783 * 0.02562 * 26 22 21 28 28 H 0.97006 * 125.74225 * 180.02562 * 27 26 22 29 29 H 1.09008 * 109.47293 * 300.35832 * 1 2 3 30 30 H 1.09002 * 109.47038 * 60.35799 * 1 2 3 31 31 H 1.08994 * 109.47490 * 180.35684 * 1 2 3 32 32 H 1.09006 * 110.84724 * 100.19629 * 4 2 1 33 33 H 1.09000 * 110.51305 * 336.97968 * 4 2 1 34 34 H 0.97003 * 120.00020 * 18.64557 * 7 5 4 35 35 H 0.97000 * 120.00591 * 180.02562 * 11 10 8 36 36 H 1.08994 * 110.36866 * 204.15207 * 16 5 4 37 37 H 1.08999 * 110.37158 * 81.82045 * 16 5 4 38 38 H 1.07996 * 126.15979 * 0.02562 * 21 20 18 39 39 H 1.08000 * 125.26965 * 180.26166 * 24 23 22 40 40 H 1.08004 * 126.40860 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2427 5 6 3.2863 -1.5183 -0.6914 6 1 3.4807 -2.4156 -1.2791 7 7 4.4699 -0.6562 -0.6463 8 6 5.7188 -1.2116 -0.5632 9 1 5.8312 -2.2853 -0.5313 10 6 6.8402 -0.3946 -0.5209 11 7 6.7032 0.9138 -0.5602 12 14 8.5439 -1.1523 -0.4083 13 1 8.7780 -2.0221 -1.5890 14 1 9.5644 -0.0738 -0.3786 15 1 8.6441 -1.9633 0.8316 16 6 2.8099 -1.8826 0.7368 17 7 2.0300 -0.7140 1.1839 18 6 1.8072 -0.3620 2.4657 19 8 1.1186 0.6091 2.7194 20 6 2.3942 -1.1481 3.5537 21 6 2.3796 -0.8133 4.8901 22 6 3.0449 -1.8264 5.5895 23 8 3.4467 -2.2538 6.8068 24 6 4.0930 -3.4254 6.6831 25 6 4.1259 -3.7840 5.3876 26 6 3.4583 -2.7731 4.6574 27 7 3.0575 -2.3520 3.4157 28 1 3.2130 -2.8209 2.5809 29 1 -0.3634 0.5194 0.8868 30 1 -0.3633 0.5083 -0.8932 31 1 -0.3634 -1.0276 0.0064 32 1 2.3597 -0.0450 -2.0192 33 1 1.3052 -1.4406 -1.6196 34 1 4.3689 0.3081 -0.6753 35 1 7.4868 1.4847 -0.5311 36 1 3.6655 -2.0412 1.3932 37 1 2.1800 -2.7718 0.7115 38 1 1.9348 0.0717 5.3205 39 1 4.5166 -3.9931 7.4984 40 1 4.5778 -4.6766 4.9808 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988910209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:14 Heat of formation + Delta-G solvation = 35.885918 kcal Electronic energy + Delta-G solvation = -25058.972939 eV Core-core repulsion = 21455.606625 eV Total energy + Delta-G solvation = -3603.366314 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.93251 -41.62531 -39.97605 -38.74429 -35.86013 -33.49699 -33.25608 -33.02039 -31.53732 -30.21781 -29.23237 -26.95985 -25.81656 -25.10252 -22.99162 -22.25528 -21.77865 -21.43928 -20.42295 -19.29972 -18.65093 -18.30018 -17.59886 -17.24204 -16.56140 -16.43414 -16.36521 -15.62631 -15.47993 -15.29802 -14.91641 -14.67362 -14.48895 -14.20715 -14.09901 -13.67950 -13.57633 -13.30933 -13.17743 -12.89143 -12.79198 -12.73458 -12.31280 -12.30197 -12.07232 -11.68609 -11.55490 -11.26690 -11.08364 -11.01023 -9.83970 -9.66024 -9.05774 -8.86297 -7.96908 -5.26333 -0.05451 1.18603 1.45632 1.47363 1.50203 1.53449 1.66239 1.69022 2.18151 2.24315 2.53094 3.31471 3.37824 3.59512 3.74259 3.81151 3.87591 3.94351 4.07763 4.28169 4.32005 4.37924 4.45309 4.54314 4.62240 4.67189 4.72291 4.75143 4.86876 5.00195 5.05419 5.13043 5.18534 5.30857 5.39848 5.44696 5.51170 5.59980 6.11728 6.23528 6.29442 6.38656 6.94852 7.30717 8.05193 8.26509 9.26155 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.010094 B = 0.005987 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.233462 B = 4675.998472 C = 6704.241474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.133 3.867 3 H 0.046 0.954 4 C -0.120 4.120 5 C 0.161 3.839 6 H 0.094 0.906 7 N -0.725 5.725 8 C -0.239 4.239 9 H 0.087 0.913 10 C -0.074 4.074 11 N -0.969 5.969 12 Si 0.967 3.033 13 H -0.272 1.272 14 H -0.304 1.304 15 H -0.280 1.280 16 C 0.057 3.943 17 N -0.595 5.595 18 C 0.597 3.403 19 O -0.565 6.565 20 C -0.004 4.004 21 C -0.098 4.098 22 C -0.073 4.073 23 O -0.184 6.184 24 C 0.030 3.970 25 C -0.217 4.217 26 C 0.002 3.998 27 N -0.524 5.524 28 H 0.430 0.570 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.371 0.629 35 H 0.249 0.751 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.159 0.841 39 H 0.264 0.736 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.900 -12.873 7.045 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.031 3.969 3 H 0.064 0.936 4 C -0.159 4.159 5 C 0.050 3.950 6 H 0.112 0.888 7 N -0.363 5.363 8 C -0.370 4.370 9 H 0.104 0.896 10 C -0.266 4.266 11 N -0.620 5.620 12 Si 0.796 3.204 13 H -0.198 1.198 14 H -0.230 1.230 15 H -0.206 1.206 16 C -0.069 4.069 17 N -0.326 5.326 18 C 0.387 3.613 19 O -0.446 6.446 20 C -0.117 4.117 21 C -0.126 4.126 22 C -0.124 4.124 23 O -0.082 6.082 24 C -0.037 4.037 25 C -0.238 4.238 26 C -0.113 4.113 27 N -0.134 5.134 28 H 0.277 0.723 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.202 0.798 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.177 0.823 39 H 0.279 0.721 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -10.173 -12.370 7.285 17.595 hybrid contribution 1.388 0.381 -0.278 1.466 sum -8.785 -11.988 7.007 16.432 Atomic orbital electron populations 1.22044 0.92942 1.02946 1.02732 1.21652 0.95428 0.95481 0.84377 0.93561 1.23003 0.97360 1.00135 0.95356 1.21638 0.86366 0.94946 0.92031 0.88805 1.42544 1.01232 1.05151 1.87414 1.19603 0.84369 0.92303 1.40767 0.89553 1.25540 1.01601 0.95704 1.03794 1.69816 1.29365 1.03519 1.59252 0.85312 0.80007 0.76785 0.78262 1.19799 1.23035 1.20635 1.23685 0.94433 0.88439 1.00340 1.48365 1.51203 1.28730 1.04325 1.16645 0.80175 0.83403 0.81046 1.90783 1.41245 1.28930 1.83611 1.20095 1.07164 0.90277 0.94155 1.19953 1.04328 0.99394 0.88895 1.19357 1.09599 1.00051 0.83408 1.84009 1.61113 1.35332 1.27743 1.25118 0.95342 0.84274 0.98941 1.21026 1.08654 1.01781 0.92381 1.19727 1.05768 0.99972 0.85827 1.42084 1.45376 1.18169 1.07799 0.72286 0.93681 0.89514 0.91052 0.90024 0.86429 0.79788 0.94263 0.91860 0.87948 0.82345 0.72056 0.80124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.10 71.98 0.66 -3.08 16 2 C 0.13 4.07 3.46 45.34 0.16 4.23 16 3 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.12 -3.15 6.06 31.79 0.19 -2.95 16 5 C 0.16 5.16 3.69 46.38 0.17 5.33 16 6 H 0.09 2.70 8.13 -2.38 -0.02 2.68 16 7 N -0.73 -33.02 5.27 -316.39 -1.67 -34.68 16 8 C -0.24 -12.12 9.98 84.03 0.84 -11.28 16 9 H 0.09 4.03 7.83 -2.91 -0.02 4.01 16 10 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 11 N -0.97 -58.62 13.06 21.65 0.28 -58.33 16 12 Si 0.97 44.59 29.55 68.60 2.03 46.62 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 C 0.06 1.66 5.12 86.85 0.44 2.11 16 17 N -0.59 -19.81 3.06 -792.89 -2.43 -22.24 16 18 C 0.60 22.58 7.61 86.40 0.66 23.24 16 19 O -0.57 -24.10 15.86 -4.43 -0.07 -24.17 16 20 C 0.00 -0.14 6.82 40.19 0.27 0.13 16 21 C -0.10 -3.38 10.59 22.57 0.24 -3.14 16 22 C -0.07 -2.36 8.20 22.90 0.19 -2.17 16 23 O -0.18 -4.96 10.68 -11.55 -0.12 -5.09 16 24 C 0.03 0.54 12.02 66.96 0.80 1.34 16 25 C -0.22 -4.63 10.89 22.19 0.24 -4.38 16 26 C 0.00 0.05 8.11 39.32 0.32 0.37 16 27 N -0.52 -16.07 5.44 -176.20 -0.96 -17.03 16 28 H 0.43 11.54 5.19 -92.70 -0.48 11.06 16 29 H 0.04 1.36 6.83 -2.38 -0.02 1.34 16 30 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.12 2.17 7.84 -2.39 -0.02 2.16 16 34 H 0.37 19.19 7.82 -92.71 -0.72 18.47 16 35 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.06 2.11 5.55 -2.39 -0.01 2.09 16 37 H 0.10 2.17 8.09 -2.39 -0.02 2.15 16 38 H 0.16 5.17 8.06 -2.91 -0.02 5.15 16 39 H 0.26 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.18 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -73.62 333.73 2.60 -71.02 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -0.11 Total: 37.76 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.65 Total: 6.13 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -4.77 Total: -132.28 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.19 Total: -29.26 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -73.62 2.60 -71.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988910209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.909 kcal (2) G-P(sol) polarization free energy of solvation -73.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds