Wall clock time and date at job start Tue Mar 31 2020 08:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.91566 * 2 1 4 4 C 1.54908 * 111.00675 * 236.09981 * 2 1 3 5 5 N 1.47429 * 104.83221 * 204.91382 * 4 2 1 6 6 C 1.36932 * 125.64649 * 204.16619 * 5 4 2 7 7 H 1.08001 * 120.00211 * 354.83239 * 6 5 4 8 8 C 1.38816 * 119.99839 * 174.83779 * 6 5 4 9 9 N 1.31618 * 120.00169 * 7.05908 * 8 6 5 10 10 Si 1.86803 * 120.00065 * 187.06136 * 8 6 5 11 11 H 1.48498 * 109.47360 * 94.98372 * 10 8 6 12 12 H 1.48504 * 109.47113 * 214.98641 * 10 8 6 13 13 H 1.48501 * 109.47015 * 334.98267 * 10 8 6 14 14 C 1.47022 * 108.70166 * 24.12897 * 5 4 2 15 15 C 1.54317 * 107.27395 * 358.93727 * 14 5 4 16 16 H 1.09002 * 110.71710 * 96.34634 * 15 14 5 17 17 N 1.46497 * 110.72408 * 219.44458 * 15 14 5 18 18 C 1.34775 * 120.00302 * 273.54632 * 17 15 14 19 19 O 1.21728 * 119.99441 * 0.02562 * 18 17 15 20 20 C 1.46488 * 120.00309 * 179.97438 * 18 17 15 21 21 C 1.37778 * 125.86100 * 179.69102 * 20 18 17 22 22 C 1.39928 * 107.68958 * 179.84535 * 21 20 18 23 23 O 1.35125 * 145.14266 * 179.97438 * 22 21 20 24 24 C 1.34380 * 109.62601 * 180.42914 * 23 22 21 25 25 C 1.34465 * 109.44758 * 0.02562 * 24 23 22 26 26 C 1.39136 * 107.40423 * 0.42025 * 22 21 20 27 27 N 1.37110 * 108.10672 * 359.74384 * 26 22 21 28 28 H 0.97008 * 125.74094 * 180.02562 * 27 26 22 29 29 H 1.08996 * 109.46900 * 296.09491 * 1 2 3 30 30 H 1.09003 * 109.46782 * 56.10139 * 1 2 3 31 31 H 1.09002 * 109.46309 * 176.09917 * 1 2 3 32 32 H 1.08999 * 110.36788 * 86.07605 * 4 2 1 33 33 H 1.08995 * 110.46209 * 323.79823 * 4 2 1 34 34 H 0.97001 * 120.00287 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.88004 * 239.51987 * 14 5 4 36 36 H 1.08993 * 110.01164 * 118.43094 * 14 5 4 37 37 H 0.97010 * 119.99905 * 93.54869 * 17 15 14 38 38 H 1.07999 * 126.15529 * 359.97438 * 21 20 18 39 39 H 1.08002 * 125.27726 * 179.97438 * 24 23 22 40 40 H 1.07999 * 126.41708 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4272 -1.2429 -0.7733 6 6 4.4645 -1.5651 -1.6071 7 1 4.3105 -1.5903 -2.6758 8 6 5.7140 -1.8595 -1.0788 9 7 5.8694 -1.9656 0.2239 10 14 7.1750 -2.1051 -2.2167 11 1 7.9223 -0.8284 -2.3455 12 1 8.0702 -3.1482 -1.6547 13 1 6.6938 -2.5342 -3.5544 14 6 3.4675 -1.2740 0.6960 15 6 2.0863 -0.8079 1.2023 16 1 1.4480 -1.6632 1.4239 17 7 2.2287 0.0496 2.3815 18 6 2.3022 -0.5004 3.6098 19 8 2.2507 -1.7097 3.7391 20 6 2.4451 0.3570 4.7889 21 6 2.5253 -0.0738 6.0951 22 6 2.6581 1.0571 6.9084 23 8 2.7867 1.5007 8.1783 24 6 2.8574 2.8426 8.1826 25 6 2.7759 3.2993 6.9205 26 6 2.6469 2.1719 6.0760 27 7 2.5165 1.7366 4.7824 28 1 2.4808 2.3022 3.9951 29 1 -0.3633 0.4520 0.9229 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3632 -1.0254 -0.0699 32 1 2.1560 -0.1719 -2.0836 33 1 1.4526 -1.6703 -1.4043 34 1 6.7425 -2.1709 0.5931 35 1 4.2427 -0.5996 1.0600 36 1 3.6663 -2.2882 1.0424 37 1 2.2700 1.0133 2.2784 38 1 2.4937 -1.0998 6.4308 39 1 2.9624 3.4589 9.0633 40 1 2.8045 4.3332 6.6096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079794456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:50 Heat of formation + Delta-G solvation = 30.338250 kcal Electronic energy + Delta-G solvation = -24348.411228 eV Core-core repulsion = 20744.804349 eV Total energy + Delta-G solvation = -3603.606879 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.91068 -41.37861 -40.02591 -38.91842 -35.74038 -34.38290 -33.31068 -32.20551 -31.68943 -30.21292 -28.85036 -27.37312 -25.69836 -24.33198 -22.70971 -22.13210 -21.76593 -21.59205 -20.81730 -19.37574 -18.90005 -18.10309 -17.55657 -17.26629 -16.95551 -16.49178 -16.04251 -15.84605 -15.58987 -14.98604 -14.78167 -14.56755 -14.39364 -14.31386 -14.09645 -13.74413 -13.65366 -13.35749 -13.06725 -12.87411 -12.77857 -12.61950 -12.19840 -12.10773 -11.88905 -11.69032 -11.48671 -11.31826 -11.06959 -10.74838 -10.18260 -9.65828 -8.94058 -8.89104 -7.87186 -5.24160 -0.06691 1.20505 1.43891 1.45897 1.48662 1.55411 1.69873 1.74010 2.20259 2.27297 2.48534 3.31108 3.51113 3.61527 3.70628 3.80929 3.96346 4.01685 4.07550 4.30767 4.44044 4.50569 4.58477 4.70039 4.71561 4.76747 4.88004 5.01511 5.04102 5.07433 5.10682 5.27097 5.41600 5.44110 5.48442 5.51855 5.61252 5.74728 6.13848 6.15086 6.30416 6.46689 7.01706 7.07700 7.74153 8.38008 9.22379 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.003562 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.125756 B = 7859.721542 C = 8771.430145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 H 0.094 0.906 4 C 0.132 3.868 5 N -0.627 5.627 6 C -0.242 4.242 7 H 0.089 0.911 8 C -0.068 4.068 9 N -0.951 5.951 10 Si 0.979 3.021 11 H -0.285 1.285 12 H -0.299 1.299 13 H -0.264 1.264 14 C 0.186 3.814 15 C 0.137 3.863 16 H 0.079 0.921 17 N -0.695 5.695 18 C 0.588 3.412 19 O -0.565 6.565 20 C -0.002 4.002 21 C -0.094 4.094 22 C -0.076 4.076 23 O -0.186 6.186 24 C 0.029 3.971 25 C -0.213 4.213 26 C 0.016 3.984 27 N -0.517 5.517 28 H 0.434 0.566 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.244 0.756 35 H 0.018 0.982 36 H -0.011 1.011 37 H 0.409 0.591 38 H 0.154 0.846 39 H 0.261 0.739 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.289 16.027 11.627 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.112 4.112 3 H 0.112 0.888 4 C 0.007 3.993 5 N -0.354 5.354 6 C -0.371 4.371 7 H 0.107 0.893 8 C -0.261 4.261 9 N -0.600 5.600 10 Si 0.807 3.193 11 H -0.211 1.211 12 H -0.227 1.227 13 H -0.188 1.188 14 C 0.060 3.940 15 C 0.031 3.969 16 H 0.097 0.903 17 N -0.345 5.345 18 C 0.376 3.624 19 O -0.443 6.443 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.127 4.127 23 O -0.085 6.085 24 C -0.038 4.038 25 C -0.234 4.234 26 C -0.099 4.099 27 N -0.122 5.122 28 H 0.275 0.725 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.037 0.963 36 H 0.008 0.992 37 H 0.246 0.754 38 H 0.171 0.829 39 H 0.277 0.723 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.143 14.961 11.759 22.052 hybrid contribution 1.346 -0.049 -0.901 1.620 sum -9.797 14.913 10.858 20.887 Atomic orbital electron populations 1.21671 0.91515 1.02466 1.03104 1.22548 0.97390 0.98929 0.92322 0.88763 1.21877 0.85150 0.95866 0.96435 1.44730 1.09766 1.79061 1.01856 1.19510 0.88226 1.39401 0.89985 0.89334 1.25740 1.00588 1.02402 0.97398 1.70249 1.22414 1.55864 1.11496 0.85046 0.79026 0.76960 0.78237 1.21145 1.22653 1.18822 1.21123 0.92615 0.96645 0.83665 1.22147 0.96725 0.93636 0.84353 0.90253 1.45548 1.73551 1.10552 1.04844 1.17090 0.76223 0.86758 0.82364 1.90866 1.52015 1.15232 1.86237 1.19876 1.15777 0.82092 0.93724 1.20002 1.06805 0.97350 0.88086 1.19323 1.14907 0.95647 0.82851 1.84028 1.75343 1.23681 1.25404 1.25145 0.99055 0.79199 1.00414 1.21021 1.13397 0.98461 0.90541 1.19558 1.08785 0.96671 0.84869 1.41019 1.59705 1.04714 1.06789 0.72493 0.91317 0.90189 0.92891 0.92440 0.95546 0.94666 0.96340 0.99239 0.75402 0.82851 0.72305 0.79692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.31 71.98 0.67 -2.16 16 2 C -0.09 -2.76 3.25 -9.40 -0.03 -2.79 16 3 H 0.09 2.54 8.00 -2.38 -0.02 2.52 16 4 C 0.13 5.08 6.70 86.85 0.58 5.66 16 5 N -0.63 -32.47 3.39 -692.00 -2.35 -34.82 16 6 C -0.24 -13.71 10.27 84.04 0.86 -12.85 16 7 H 0.09 4.71 7.84 -2.91 -0.02 4.69 16 8 C -0.07 -3.99 5.48 84.86 0.46 -3.53 16 9 N -0.95 -59.97 10.36 21.65 0.22 -59.75 16 10 Si 0.98 46.66 29.56 68.60 2.03 48.69 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 13 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 14 C 0.19 9.63 5.13 86.73 0.44 10.07 16 15 C 0.14 5.17 2.70 46.18 0.12 5.29 16 16 H 0.08 3.22 7.59 -2.39 -0.02 3.20 16 17 N -0.69 -21.81 5.13 -441.04 -2.26 -24.07 16 18 C 0.59 21.01 7.78 86.39 0.67 21.68 16 19 O -0.56 -25.44 16.59 -4.44 -0.07 -25.51 16 20 C 0.00 -0.06 7.03 40.19 0.28 0.22 16 21 C -0.09 -2.89 10.58 22.57 0.24 -2.66 16 22 C -0.08 -2.09 8.20 22.90 0.19 -1.90 16 23 O -0.19 -4.26 10.68 -11.52 -0.12 -4.38 16 24 C 0.03 0.38 12.02 66.96 0.80 1.18 16 25 C -0.21 -3.17 10.89 22.20 0.24 -2.93 16 26 C 0.02 0.36 8.11 39.32 0.32 0.68 16 27 N -0.52 -11.54 6.08 -176.20 -1.07 -12.61 16 28 H 0.43 6.69 8.16 -92.70 -0.76 5.93 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.23 8.08 -2.39 -0.02 1.21 16 32 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.03 1.02 7.99 -2.39 -0.02 1.00 16 34 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.02 1.06 7.18 -2.39 -0.02 1.04 16 36 H -0.01 -0.67 7.61 -2.39 -0.02 -0.69 16 37 H 0.41 9.50 7.61 -92.70 -0.71 8.80 16 38 H 0.15 4.68 8.06 -2.91 -0.02 4.65 16 39 H 0.26 0.41 8.06 -2.91 -0.02 0.39 16 40 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -82.53 337.51 1.87 -80.66 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -0.37 Total: 15.82 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 5.87 Total: 15.97 kcal Atomic # 7 Polarization: -125.79 SS G_CDS: -5.46 Total: -131.24 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.20 Total: -29.90 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -82.53 1.87 -80.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079794456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.001 kcal (2) G-P(sol) polarization free energy of solvation -82.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds