Wall clock time and date at job start Tue Mar 31 2020 08:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47014 * 2 1 4 4 N 1.46905 * 109.46749 * 179.15594 * 3 2 1 5 5 C 1.46902 * 110.99813 * 296.50936 * 4 3 2 6 6 C 1.50700 * 109.47238 * 288.52329 * 5 4 3 7 7 H 1.08002 * 119.99684 * 0.80980 * 6 5 4 8 8 C 1.37872 * 120.00201 * 180.81427 * 6 5 4 9 9 N 1.31518 * 120.00437 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99970 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46918 * 90.00292 * 10 8 6 12 12 H 1.48496 * 109.47454 * 210.00211 * 10 8 6 13 13 H 1.48503 * 109.47012 * 330.00511 * 10 8 6 14 14 C 1.46897 * 111.00121 * 60.46449 * 4 3 2 15 15 C 1.50701 * 109.47259 * 66.04512 * 14 4 3 16 16 C 1.38614 * 120.07612 * 94.99885 * 15 14 4 17 17 C 1.38878 * 117.96984 * 180.02562 * 16 15 14 18 18 C 1.38605 * 117.96738 * 359.97438 * 17 16 15 19 19 C 1.50704 * 120.07575 * 179.97438 * 18 17 16 20 20 F 1.39895 * 109.47446 * 90.00188 * 19 18 17 21 21 F 1.39901 * 109.47066 * 210.00141 * 19 18 17 22 22 F 1.39900 * 109.47114 * 329.99432 * 19 18 17 23 23 N 1.31935 * 119.84985 * 0.02562 * 18 17 16 24 24 N 1.28346 * 122.17948 * 359.97438 * 23 18 17 25 25 H 1.09001 * 109.47490 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47230 * 300.00237 * 1 2 3 27 27 H 1.09006 * 109.47050 * 59.99639 * 1 2 3 28 28 H 1.09000 * 109.46491 * 239.99845 * 2 1 3 29 29 H 1.08995 * 109.46857 * 119.99881 * 2 1 3 30 30 H 1.09000 * 109.47359 * 59.15410 * 3 2 1 31 31 H 1.09004 * 109.47180 * 299.14827 * 3 2 1 32 32 H 1.08993 * 109.47178 * 48.52283 * 5 4 3 33 33 H 1.08995 * 109.46826 * 168.52046 * 5 4 3 34 34 H 0.96997 * 120.00181 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.46928 * 306.04585 * 14 4 3 36 36 H 1.09002 * 109.46854 * 186.04756 * 14 4 3 37 37 H 1.07996 * 121.01290 * 0.27362 * 16 15 14 38 38 H 1.07995 * 121.01689 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 0.0204 5 6 4.0182 0.8363 1.2579 6 6 3.7607 1.7661 2.4156 7 1 3.2563 2.7068 2.2508 8 6 4.1690 1.4159 3.6850 9 7 3.9439 2.2270 4.6955 10 14 5.0409 -0.2114 3.9700 11 1 6.5060 -0.0209 3.8201 12 1 4.7429 -0.6994 5.3405 13 1 4.5670 -1.2077 2.9759 14 6 4.0518 0.7606 -1.1620 15 6 3.7105 1.5511 -2.3988 16 6 4.6205 2.4602 -2.9153 17 6 4.2605 3.1654 -4.0562 18 6 3.0137 2.9162 -4.6081 19 6 2.5743 3.6552 -5.8458 20 9 2.9609 2.9348 -6.9811 21 9 1.1825 3.7967 -5.8350 22 9 3.1713 4.9201 -5.8704 23 7 2.2121 2.0313 -4.0468 24 7 2.5449 1.3796 -2.9924 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6643 1.9607 0.8823 31 1 1.6892 1.9519 -0.8975 32 1 3.5104 -0.1120 1.4336 33 1 5.0899 0.6625 1.1629 34 1 4.2309 1.9804 5.5886 35 1 3.6185 -0.2368 -1.2372 36 1 5.1349 0.6801 -1.0696 37 1 5.5817 2.6124 -2.4471 38 1 4.9315 3.8860 -4.4999 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141496550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:19 Heat of formation + Delta-G solvation = -84.653492 kcal Electronic energy + Delta-G solvation = -24893.839219 eV Core-core repulsion = 20743.389183 eV Total energy + Delta-G solvation = -4150.450036 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.45232 -48.00223 -47.88421 -41.43513 -37.83576 -33.90166 -33.72442 -32.82420 -31.82195 -28.87411 -27.22214 -26.47100 -24.67561 -23.89282 -22.55826 -22.00926 -19.48849 -19.11342 -18.86044 -18.80516 -17.43511 -16.87556 -15.96195 -15.70119 -15.06516 -14.90023 -14.78000 -14.72668 -14.55474 -14.35152 -14.18615 -14.06001 -14.04390 -13.82276 -13.37789 -13.14839 -12.88612 -12.52236 -12.01020 -11.57056 -11.55320 -11.26966 -11.17625 -10.90207 -10.71022 -10.60438 -10.46447 -10.24581 -10.02743 -9.93474 -9.85380 -9.39022 -8.62839 -7.51528 -6.11048 -4.08858 0.29589 0.48851 2.09078 3.03736 3.16911 3.22129 3.30560 3.31179 3.51771 3.99902 4.05844 4.22183 4.32061 4.35182 4.54880 4.69858 4.79674 5.20686 5.24555 5.34101 5.47484 5.52880 5.62198 5.79767 5.82321 5.87741 6.04672 6.28642 6.34727 6.46462 6.50890 6.75379 6.87024 6.96558 7.46953 7.71640 7.84507 8.29853 8.56207 8.97984 9.49579 11.02051 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.023441 B = 0.003478 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.221025 B = 8049.314463 C = 8497.821879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.159 4.159 3 C 0.062 3.938 4 N -0.519 5.519 5 C 0.159 3.841 6 C -0.507 4.507 7 H 0.080 0.920 8 C 0.070 3.930 9 N -0.898 5.898 10 Si 0.872 3.128 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.089 3.911 15 C 0.120 3.880 16 C -0.093 4.093 17 C -0.079 4.079 18 C -0.039 4.039 19 C 0.534 3.466 20 F -0.170 7.170 21 F -0.161 7.161 22 F -0.169 7.169 23 N -0.192 5.192 24 N -0.223 5.223 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.002 0.998 33 H 0.023 0.977 34 H 0.264 0.736 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.166 0.834 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.850 -0.194 -19.619 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C -0.066 4.066 4 N -0.242 5.242 5 C 0.034 3.966 6 C -0.546 4.546 7 H 0.098 0.902 8 C -0.132 4.132 9 N -0.537 5.537 10 Si 0.700 3.300 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.041 4.041 15 C -0.023 4.023 16 C -0.122 4.122 17 C -0.108 4.108 18 C -0.185 4.185 19 C 0.477 3.523 20 F -0.151 7.151 21 F -0.142 7.142 22 F -0.151 7.151 23 N -0.035 5.035 24 N -0.067 5.067 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.020 0.980 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.184 0.816 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.420 -0.452 -19.463 19.473 hybrid contribution 1.562 -0.723 0.164 1.729 sum 1.142 -1.174 -19.298 19.368 Atomic orbital electron populations 1.21615 0.95993 1.00784 1.01562 1.22101 0.96317 0.99693 1.01664 1.22156 0.86997 0.95265 1.02181 1.62326 1.07739 1.53152 1.00960 1.20286 0.94640 0.94636 0.87059 1.20947 1.38443 1.05470 0.89717 0.90181 1.24872 0.95703 0.96622 0.95982 1.69884 1.47311 1.36579 0.99953 0.86910 0.80446 0.84845 0.77836 1.20165 1.21165 1.19215 1.21154 1.01070 0.94979 0.86911 1.23263 0.90222 0.92967 0.95856 1.22406 1.02083 0.93582 0.94147 1.22120 0.95170 0.98266 0.95220 1.22592 0.95763 1.01500 0.98668 1.17538 0.75624 0.76818 0.82297 1.93242 1.90906 1.77797 1.53151 1.93258 1.28775 1.95611 1.96555 1.93222 1.83671 1.41547 1.96648 1.72987 1.26323 1.01131 1.03037 1.73206 1.15126 1.16892 1.01440 0.93573 0.92769 0.92978 0.92345 0.91421 0.89514 0.92234 0.98041 0.95859 0.92595 0.92078 0.88755 0.81618 0.82108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.16 -2.68 5.29 -26.73 -0.14 -2.82 16 3 C 0.06 1.16 4.92 -3.82 -0.02 1.14 16 4 N -0.52 -9.84 4.65 -237.52 -1.10 -10.94 16 5 C 0.16 3.52 3.67 -4.97 -0.02 3.50 16 6 C -0.51 -13.64 9.10 -34.44 -0.31 -13.95 16 7 H 0.08 2.39 7.71 -52.49 -0.40 1.98 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.90 -26.69 13.96 55.43 0.77 -25.91 16 10 Si 0.87 20.44 27.45 -169.99 -4.67 15.77 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.27 -5.97 6.57 56.52 0.37 -5.60 16 14 C 0.09 1.32 5.06 -4.98 -0.03 1.29 16 15 C 0.12 1.65 5.77 -82.41 -0.48 1.18 16 16 C -0.09 -1.00 9.85 -39.21 -0.39 -1.39 16 17 C -0.08 -0.79 9.54 -39.21 -0.37 -1.16 16 18 C -0.04 -0.47 6.37 -82.41 -0.53 -1.00 16 19 C 0.53 5.87 3.45 36.01 0.12 5.99 16 20 F -0.17 -1.83 17.30 2.25 0.04 -1.79 16 21 F -0.16 -1.98 17.05 2.25 0.04 -1.95 16 22 F -0.17 -1.68 16.51 2.25 0.04 -1.64 16 23 N -0.19 -2.84 11.14 33.60 0.37 -2.46 16 24 N -0.22 -3.41 10.02 33.59 0.34 -3.07 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.94 6.33 -51.93 -0.33 0.61 16 29 H 0.07 1.25 6.22 -51.93 -0.32 0.93 16 30 H 0.09 1.83 7.15 -51.93 -0.37 1.46 16 31 H 0.06 1.08 6.33 -51.93 -0.33 0.75 16 32 H 0.00 0.04 5.02 -51.93 -0.26 -0.22 16 33 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.06 0.90 6.03 -51.93 -0.31 0.59 16 36 H 0.09 1.21 7.78 -51.93 -0.40 0.81 16 37 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.16 1.04 7.68 -52.49 -0.40 0.64 16 LS Contribution 325.50 15.07 4.91 4.91 Total: -1.00 -29.99 325.50 -5.52 -35.51 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.37 Total: -1.30 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -1.88 Total: -7.13 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.38 Total: -42.39 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.11 Total: -5.37 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.99 -5.52 -35.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141496550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.142 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds