Wall clock time and date at job start Tue Mar 31 2020 08:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46825 * 2 1 4 4 H 1.08994 * 109.47378 * 304.99866 * 3 2 1 5 5 C 1.50699 * 109.46748 * 185.00025 * 3 2 1 6 6 H 1.08004 * 120.00295 * 240.00313 * 5 3 2 7 7 C 1.37883 * 120.00042 * 59.99770 * 5 3 2 8 8 N 1.31508 * 120.00028 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99950 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46788 * 60.00296 * 9 7 5 11 11 H 1.48499 * 109.47122 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47163 * 300.00255 * 9 7 5 13 13 N 1.46494 * 109.46919 * 65.00401 * 3 2 1 14 14 C 1.34785 * 119.99796 * 274.99141 * 13 3 2 15 15 O 1.21576 * 119.99689 * 0.02562 * 14 13 3 16 16 C 1.47604 * 119.99607 * 180.02562 * 14 13 3 17 17 C 1.40168 * 119.94052 * 359.97438 * 16 14 13 18 18 C 1.36193 * 120.51672 * 179.97438 * 17 16 14 19 19 C 1.40013 * 120.07968 * 0.07967 * 18 17 16 20 20 N 1.35557 * 133.39999 * 179.62966 * 19 18 17 21 21 C 1.30220 * 109.70543 * 179.88038 * 20 19 18 22 22 C 1.50696 * 124.92594 * 180.12259 * 21 20 19 23 23 O 1.42902 * 109.47349 * 180.33217 * 22 21 20 24 24 N 1.35855 * 110.14782 * 0.41273 * 21 20 19 25 25 H 0.97001 * 126.36548 * 179.71002 * 24 21 20 26 26 C 1.38188 * 107.27034 * 359.74617 * 24 21 20 27 27 C 1.38412 * 134.02271 * 179.97438 * 26 24 21 28 28 H 1.08997 * 109.47549 * 60.00056 * 1 2 3 29 29 H 1.08998 * 109.46944 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47007 * 299.99620 * 1 2 3 31 31 H 1.09001 * 109.46799 * 239.99867 * 2 1 3 32 32 H 1.09003 * 109.46870 * 119.99862 * 2 1 3 33 33 H 0.97004 * 120.00289 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00707 * 94.99842 * 13 3 2 35 35 H 1.07998 * 119.73934 * 359.97438 * 17 16 14 36 36 H 1.08006 * 119.95840 * 180.02562 * 18 17 16 37 37 H 1.08997 * 109.47175 * 300.33011 * 22 21 20 38 38 H 1.09004 * 109.47410 * 60.33684 * 22 21 20 39 39 H 0.96700 * 114.00375 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.21259 * 0.05592 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8812 -1.3818 10 1 6.5974 0.1473 -0.2349 11 1 6.3977 0.2177 -2.6509 12 1 6.4994 2.2815 -1.3822 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3415 2.6319 0.4321 16 6 0.0449 3.3247 2.6281 17 6 0.9411 3.3609 3.7052 18 6 0.5934 3.9675 4.8740 19 6 -0.6678 4.5603 5.0089 20 7 -1.2858 5.2145 6.0227 21 6 -2.4764 5.5836 5.6458 22 6 -3.4580 6.3384 6.5047 23 8 -4.6608 6.5647 5.7671 24 7 -2.7077 5.1839 4.3681 25 1 -3.5190 5.3314 3.8573 26 6 -1.5727 4.5274 3.9318 27 6 -1.2144 3.9105 2.7457 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0604 -2.9503 34 1 2.2719 2.1231 1.9978 35 1 1.9148 2.9042 3.6075 36 1 1.2912 3.9904 5.6981 37 1 -3.6835 5.7548 7.3972 38 1 -3.0250 7.2954 6.7961 39 1 -5.3391 7.0472 6.2592 40 1 -1.9059 3.8835 1.9167 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149313457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:50 Heat of formation + Delta-G solvation = -45.198267 kcal Electronic energy + Delta-G solvation = -23894.737552 eV Core-core repulsion = 20287.855164 eV Total energy + Delta-G solvation = -3606.882388 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.28526 -40.88965 -38.43151 -37.45820 -36.85485 -34.36440 -34.25397 -32.94634 -31.25987 -31.12547 -29.10765 -27.80788 -25.16976 -24.20153 -23.47053 -22.11768 -21.82947 -21.20693 -19.67437 -18.80434 -18.47013 -17.69380 -17.36900 -17.00694 -16.90093 -16.43864 -16.23850 -15.62767 -15.25969 -15.21317 -14.94083 -14.84241 -14.56112 -13.92610 -13.86237 -13.51056 -13.15152 -13.04942 -12.89876 -12.71386 -12.64627 -12.61408 -12.17318 -12.04953 -11.90811 -11.57196 -11.20328 -11.19940 -11.04764 -10.80166 -10.50280 -9.70146 -9.51141 -9.20354 -8.13873 -6.31080 -0.45213 0.31546 1.40109 1.47170 1.48984 1.56487 1.74852 2.11834 2.37543 2.55623 2.63257 2.87861 3.15808 3.46278 3.76326 3.87802 4.02029 4.16654 4.23372 4.23992 4.44358 4.49722 4.51890 4.55457 4.58344 4.76987 4.98102 5.08165 5.17592 5.26717 5.29890 5.34299 5.45094 5.56790 5.62051 5.65997 5.81568 5.94670 6.18053 6.27856 6.67293 6.75926 6.80921 6.96713 7.34511 7.54157 8.91457 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.030517 B = 0.002907 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.295391 B = 9631.252978 C =10206.619824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.695 5.695 14 C 0.545 3.455 15 O -0.585 6.585 16 C -0.126 4.126 17 C -0.089 4.089 18 C -0.071 4.071 19 C 0.056 3.944 20 N -0.517 5.517 21 C 0.294 3.706 22 C 0.161 3.839 23 O -0.590 6.590 24 N -0.574 5.574 25 H 0.438 0.562 26 C 0.021 3.979 27 C -0.050 4.050 28 H 0.026 0.974 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.265 0.735 34 H 0.404 0.596 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.420 0.580 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.374 11.224 19.995 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.188 1.188 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.344 5.344 14 C 0.333 3.667 15 O -0.468 6.468 16 C -0.130 4.130 17 C -0.110 4.110 18 C -0.090 4.090 19 C -0.064 4.064 20 N -0.240 5.240 21 C 0.026 3.974 22 C 0.082 3.918 23 O -0.401 6.401 24 N -0.186 5.186 25 H 0.280 0.720 26 C -0.089 4.089 27 C -0.072 4.072 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.240 0.760 35 H 0.172 0.828 36 H 0.178 0.822 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.274 0.726 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.179 10.918 19.490 25.444 hybrid contribution 0.019 0.016 -1.112 1.113 sum -12.160 10.934 18.378 24.600 Atomic orbital electron populations 1.21686 0.97135 0.99143 1.00201 1.21792 0.93634 0.99095 1.01449 1.18421 0.93805 0.89205 0.81095 0.98179 1.21549 0.91275 1.39016 1.06826 0.90849 1.25760 1.03287 0.94360 0.94999 1.70040 1.37136 1.38326 1.09830 0.85431 0.79130 0.78424 0.77553 1.18804 1.21297 1.19721 1.46174 1.15055 1.55402 1.17796 1.18486 0.82217 0.78556 0.87442 1.90714 1.52560 1.61714 1.41792 1.19669 0.95631 1.03173 0.94567 1.20966 0.99750 0.98933 0.91379 1.20123 0.93512 0.96900 0.98474 1.19492 0.96010 1.00976 0.89909 1.70245 1.05819 1.19050 1.28923 1.24203 0.93840 0.96001 0.83314 1.20517 0.82074 0.99090 0.90135 1.86261 1.26934 1.81210 1.45715 1.42880 1.15183 1.46551 1.13983 0.71986 1.18750 0.89933 1.03016 0.97164 1.19957 0.96071 0.96218 0.94926 0.95457 0.93545 0.93999 0.90818 0.93902 0.92601 0.75985 0.82805 0.82243 0.87502 0.87525 0.72599 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.51 71.98 0.61 -5.12 16 2 C -0.12 -6.02 5.45 30.60 0.17 -5.85 16 3 C 0.28 14.39 2.24 44.25 0.10 14.49 16 4 H 0.00 0.02 7.58 -2.39 -0.02 0.00 16 5 C -0.55 -29.00 8.73 25.60 0.22 -28.77 16 6 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 7 C 0.02 0.86 5.29 84.66 0.45 1.31 16 8 N -0.92 -52.45 11.29 21.45 0.24 -52.21 16 9 Si 0.97 42.04 29.54 68.60 2.03 44.07 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 N -0.70 -29.43 4.97 -449.21 -2.23 -31.67 16 14 C 0.54 22.82 6.33 86.71 0.55 23.37 16 15 O -0.59 -28.78 13.46 -3.96 -0.05 -28.83 16 16 C -0.13 -4.20 5.88 -20.06 -0.12 -4.32 16 17 C -0.09 -2.41 9.46 22.26 0.21 -2.20 16 18 C -0.07 -1.76 10.03 22.22 0.22 -1.54 16 19 C 0.06 1.55 7.23 39.60 0.29 1.83 16 20 N -0.52 -12.92 11.26 -179.81 -2.03 -14.95 16 21 C 0.29 5.73 7.90 137.95 1.09 6.82 16 22 C 0.16 1.34 7.67 71.23 0.55 1.88 16 23 O -0.59 -3.97 13.10 -148.98 -1.95 -5.92 16 24 N -0.57 -12.30 6.05 -179.34 -1.09 -13.38 16 25 H 0.44 7.48 8.54 -92.71 -0.79 6.69 16 26 C 0.02 0.59 7.29 38.79 0.28 0.88 16 27 C -0.05 -1.57 9.61 22.59 0.22 -1.35 16 28 H 0.03 1.34 7.84 -2.39 -0.02 1.32 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.88 5.64 -2.39 -0.01 1.87 16 31 H 0.07 4.09 5.95 -2.39 -0.01 4.07 16 32 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.40 14.36 6.54 -92.71 -0.61 13.76 16 35 H 0.15 3.49 6.36 -2.91 -0.02 3.47 16 36 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.42 -1.56 9.12 -74.06 -0.68 -2.24 16 40 H 0.13 4.14 7.64 -2.91 -0.02 4.12 16 Total: -1.00 -74.77 334.50 -1.19 -75.97 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -0.95 Total: 25.50 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 4.84 Total: 1.43 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -5.10 Total: -112.21 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -2.00 Total: -34.75 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -74.77 -1.19 -75.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149313457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.768 kcal (2) G-P(sol) polarization free energy of solvation -74.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds