Wall clock time and date at job start Tue Mar 31 2020 07:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46994 * 2 1 4 4 C 1.53006 * 109.47268 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47316 * 179.97438 * 4 3 2 6 6 C 1.36891 * 120.00407 * 263.44752 * 5 4 3 7 7 H 1.08002 * 120.00454 * 133.43918 * 6 5 4 8 8 C 1.39020 * 119.99943 * 313.44288 * 6 5 4 9 9 N 1.31388 * 119.99852 * 344.43449 * 8 6 5 10 10 Si 1.86797 * 120.00048 * 164.43489 * 8 6 5 11 11 H 1.48502 * 109.47381 * 89.99863 * 10 8 6 12 12 H 1.48502 * 109.47433 * 210.00046 * 10 8 6 13 13 H 1.48506 * 109.47259 * 329.99756 * 10 8 6 14 14 C 1.34784 * 119.99672 * 83.44838 * 5 4 3 15 15 O 1.21634 * 119.99922 * 0.17515 * 14 5 4 16 16 C 1.47397 * 119.99784 * 179.89682 * 14 5 4 17 17 C 1.40220 * 119.95657 * 326.32747 * 16 14 5 18 18 C 1.36180 * 120.48796 * 179.97438 * 17 16 14 19 19 C 1.40037 * 120.09832 * 359.97438 * 18 17 16 20 20 N 1.35552 * 133.26829 * 179.97438 * 19 18 17 21 21 C 1.30924 * 109.71834 * 180.02562 * 20 19 18 22 22 O 1.35207 * 125.01388 * 179.97438 * 21 20 19 23 23 N 1.36261 * 109.97538 * 0.02562 * 21 20 19 24 24 H 0.97000 * 126.40043 * 179.97438 * 23 21 20 25 25 C 1.38563 * 107.20268 * 359.97438 * 23 21 20 26 26 C 1.38191 * 133.89096 * 180.28027 * 25 23 21 27 27 H 1.09003 * 109.46689 * 59.99790 * 1 2 3 28 28 H 1.09001 * 109.46923 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47065 * 300.00247 * 1 2 3 30 30 H 1.08997 * 109.47281 * 240.00201 * 2 1 3 31 31 H 1.08996 * 109.46958 * 119.99579 * 2 1 3 32 32 H 1.09006 * 109.47159 * 59.99876 * 3 2 1 33 33 H 1.09003 * 109.47574 * 299.99668 * 3 2 1 34 34 H 1.09006 * 109.46779 * 60.00076 * 4 3 2 35 35 H 1.09003 * 109.46905 * 300.00510 * 4 3 2 36 36 H 0.96996 * 119.99468 * 179.97438 * 9 8 6 37 37 H 1.07997 * 119.75376 * 359.97438 * 17 16 14 38 38 H 1.08001 * 119.95097 * 179.97438 * 18 17 16 39 39 H 0.96699 * 113.99618 * 90.02312 * 22 21 20 40 40 H 1.08000 * 120.20794 * 359.96606 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4145 3.4233 -1.1779 7 1 4.0699 4.4222 -1.4013 8 6 5.2199 2.7464 -2.0867 9 7 5.8863 1.6799 -1.7066 10 14 5.3545 3.3533 -3.8482 11 1 6.4757 4.3212 -3.9540 12 1 5.6079 2.2016 -4.7507 13 1 4.0866 4.0198 -4.2404 14 6 4.1569 3.5041 1.1593 15 8 3.8434 2.9703 2.2064 16 6 4.6503 4.8930 1.1590 17 6 5.6252 5.2895 0.2325 18 6 6.0884 6.5701 0.2222 19 6 5.5920 7.5038 1.1402 20 7 5.8538 8.8145 1.3659 21 6 5.1155 9.2483 2.3562 22 8 5.1294 10.5112 2.8390 23 7 4.3317 8.2391 2.8294 24 1 3.6956 8.2981 3.5593 25 6 4.6132 7.1127 2.0730 26 6 4.1420 5.8136 2.0772 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9337 0.9286 -0.8892 35 1 3.9330 0.9288 0.8908 36 1 6.4479 1.2074 -2.3408 37 1 6.0116 4.5740 -0.4783 38 1 6.8397 6.8660 -0.4950 39 1 4.4987 11.1040 2.4078 40 1 3.3879 5.5113 2.7889 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152374732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:02 Heat of formation + Delta-G solvation = -4.971401 kcal Electronic energy + Delta-G solvation = -24495.068973 eV Core-core repulsion = 20889.930952 eV Total energy + Delta-G solvation = -3605.138021 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.87033 -39.05507 -37.78219 -35.92553 -35.25473 -34.04184 -32.96801 -31.60381 -29.61614 -29.36783 -27.77683 -25.09824 -23.81155 -22.32244 -22.11796 -21.32829 -20.49983 -19.44010 -18.88024 -17.95951 -17.09455 -16.60250 -15.68890 -15.33268 -14.96343 -14.72949 -14.32059 -14.13731 -13.83459 -13.69759 -13.51945 -13.26969 -12.86076 -12.51640 -12.30061 -12.05617 -11.80449 -11.44127 -11.31753 -11.14391 -11.07630 -10.92785 -10.63576 -10.55736 -10.46986 -10.40422 -10.25907 -9.81766 -9.75119 -9.12988 -8.61007 -7.98787 -7.72222 -7.47172 -6.48294 -4.22915 1.05879 1.96428 2.46406 2.77444 3.08287 3.17712 3.20926 3.83114 3.88343 4.03134 4.46048 4.62519 4.82469 4.95024 5.35217 5.44326 5.45578 5.58248 5.62037 5.69797 5.85768 5.90875 6.03233 6.20738 6.26072 6.34108 6.38085 6.48128 6.51548 6.58345 6.65666 6.77472 6.84126 6.93199 7.07516 7.14501 7.26366 7.32589 7.41841 7.67016 7.90350 7.95693 8.27471 8.94424 9.37697 9.82925 10.53774 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.004626 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.932917 B = 6051.525412 C = 7497.213712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.130 4.130 4 C 0.126 3.874 5 N -0.426 5.426 6 C -0.344 4.344 7 H 0.091 0.909 8 C 0.049 3.951 9 N -0.853 5.853 10 Si 0.908 3.092 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.513 3.487 15 O -0.599 6.599 16 C -0.063 4.063 17 C -0.065 4.065 18 C -0.093 4.093 19 C 0.064 3.936 20 N -0.487 5.487 21 C 0.434 3.566 22 O -0.446 6.446 23 N -0.601 5.601 24 H 0.419 0.581 25 C 0.042 3.958 26 C -0.078 4.078 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.273 0.727 37 H 0.170 0.830 38 H 0.129 0.871 39 H 0.405 0.595 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.469 7.520 2.434 9.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.169 4.169 4 C 0.003 3.997 5 N -0.142 5.142 6 C -0.472 4.472 7 H 0.108 0.892 8 C -0.159 4.159 9 N -0.487 5.487 10 Si 0.734 3.266 11 H -0.197 1.197 12 H -0.206 1.206 13 H -0.191 1.191 14 C 0.302 3.698 15 O -0.486 6.486 16 C -0.068 4.068 17 C -0.085 4.085 18 C -0.113 4.113 19 C -0.054 4.054 20 N -0.219 5.219 21 C 0.130 3.870 22 O -0.247 6.247 23 N -0.226 5.226 24 H 0.258 0.742 25 C -0.065 4.065 26 C -0.100 4.100 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.188 0.812 38 H 0.146 0.854 39 H 0.262 0.738 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.420 7.430 2.724 9.065 hybrid contribution -1.170 0.304 -0.307 1.247 sum -5.591 7.734 2.418 9.844 Atomic orbital electron populations 1.21756 0.96628 1.00703 1.01485 1.21430 0.95011 0.97679 1.01642 1.21939 0.97761 0.95640 1.01550 1.21280 0.91035 0.84689 1.02704 1.43229 1.54437 1.11625 1.04942 1.19382 1.30456 1.02407 0.94907 0.89178 1.25499 0.94003 0.96299 1.00123 1.69928 1.24744 1.18621 1.35421 0.86219 0.79301 0.78732 0.82349 1.19694 1.20639 1.19142 1.18218 0.81322 0.86198 0.84078 1.90637 1.55479 1.70690 1.31804 1.19843 0.97450 0.94073 0.95433 1.21773 0.94394 0.95622 0.96742 1.20017 1.01113 0.91707 0.98430 1.18947 0.97890 0.90231 0.98350 1.70519 1.25336 1.11250 1.14822 1.20259 0.91723 0.83323 0.91679 1.84801 1.63494 1.14890 1.61526 1.43263 1.37362 1.09414 1.32519 0.74207 1.18437 1.02583 0.89110 0.96418 1.19898 1.01325 0.88478 1.00297 0.93042 0.93407 0.93078 0.92248 0.92336 0.92613 0.92260 0.89027 0.92714 0.91715 0.81245 0.85351 0.73767 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.90 5.93 -26.73 -0.16 -2.06 16 3 C -0.13 -2.51 5.49 -26.73 -0.15 -2.66 16 4 C 0.13 2.85 4.83 -4.04 -0.02 2.83 16 5 N -0.43 -10.17 2.46 -116.04 -0.29 -10.46 16 6 C -0.34 -8.04 5.90 -15.00 -0.09 -8.13 16 7 H 0.09 2.08 6.96 -52.49 -0.37 1.71 16 8 C 0.05 1.13 4.64 -17.45 -0.08 1.05 16 9 N -0.85 -21.03 11.89 55.50 0.66 -20.37 16 10 Si 0.91 18.22 29.58 -169.99 -5.03 13.19 16 11 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 12 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 13 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 14 C 0.51 12.34 7.31 -12.53 -0.09 12.25 16 15 O -0.60 -15.60 16.48 5.25 0.09 -15.52 16 16 C -0.06 -1.35 5.47 -104.92 -0.57 -1.92 16 17 C -0.07 -1.31 7.88 -39.58 -0.31 -1.63 16 18 C -0.09 -1.70 10.03 -39.65 -0.40 -2.10 16 19 C 0.06 1.18 7.22 -84.60 -0.61 0.57 16 20 N -0.49 -8.47 11.29 -12.17 -0.14 -8.61 16 21 C 0.43 6.11 9.39 -88.90 -0.83 5.27 16 22 O -0.45 -4.57 13.62 -17.32 -0.24 -4.81 16 23 N -0.60 -8.00 6.27 -11.93 -0.07 -8.07 16 24 H 0.42 4.04 8.96 -40.82 -0.37 3.67 16 25 C 0.04 0.72 7.28 -83.88 -0.61 0.11 16 26 C -0.08 -1.45 9.62 -39.09 -0.38 -1.82 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 2.16 6.13 -51.93 -0.32 1.84 16 35 H 0.05 1.30 7.63 -51.93 -0.40 0.90 16 36 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 37 H 0.17 3.67 5.48 -52.49 -0.29 3.39 16 38 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 39 H 0.40 1.84 9.06 45.56 0.41 2.25 16 40 H 0.13 2.22 7.98 -52.49 -0.42 1.80 16 LS Contribution 339.38 15.07 5.11 5.11 Total: -1.00 -30.18 339.38 -8.09 -38.27 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -4.26 Total: 11.15 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -3.93 Total: 0.11 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.16 Total: -47.51 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.15 Total: -20.33 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.18 -8.09 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152374732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.297 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds