Wall clock time and date at job start Tue Mar 31 2020 07:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46994 * 2 1 4 4 C 1.53006 * 109.47268 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47316 * 179.97438 * 4 3 2 6 6 C 1.36891 * 120.00407 * 263.44752 * 5 4 3 7 7 H 1.08002 * 120.00454 * 133.43918 * 6 5 4 8 8 C 1.39020 * 119.99943 * 313.44288 * 6 5 4 9 9 N 1.31388 * 119.99852 * 344.43449 * 8 6 5 10 10 Si 1.86797 * 120.00048 * 164.43489 * 8 6 5 11 11 H 1.48502 * 109.47381 * 89.99863 * 10 8 6 12 12 H 1.48502 * 109.47433 * 210.00046 * 10 8 6 13 13 H 1.48506 * 109.47259 * 329.99756 * 10 8 6 14 14 C 1.34784 * 119.99672 * 83.44838 * 5 4 3 15 15 O 1.21634 * 119.99922 * 0.17515 * 14 5 4 16 16 C 1.47397 * 119.99784 * 179.89682 * 14 5 4 17 17 C 1.40220 * 119.95657 * 326.32747 * 16 14 5 18 18 C 1.36180 * 120.48796 * 179.97438 * 17 16 14 19 19 C 1.40037 * 120.09832 * 359.97438 * 18 17 16 20 20 N 1.35552 * 133.26829 * 179.97438 * 19 18 17 21 21 C 1.30924 * 109.71834 * 180.02562 * 20 19 18 22 22 O 1.35207 * 125.01388 * 179.97438 * 21 20 19 23 23 N 1.36261 * 109.97538 * 0.02562 * 21 20 19 24 24 H 0.97000 * 126.40043 * 179.97438 * 23 21 20 25 25 C 1.38563 * 107.20268 * 359.97438 * 23 21 20 26 26 C 1.38191 * 133.89096 * 180.28027 * 25 23 21 27 27 H 1.09003 * 109.46689 * 59.99790 * 1 2 3 28 28 H 1.09001 * 109.46923 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47065 * 300.00247 * 1 2 3 30 30 H 1.08997 * 109.47281 * 240.00201 * 2 1 3 31 31 H 1.08996 * 109.46958 * 119.99579 * 2 1 3 32 32 H 1.09006 * 109.47159 * 59.99876 * 3 2 1 33 33 H 1.09003 * 109.47574 * 299.99668 * 3 2 1 34 34 H 1.09006 * 109.46779 * 60.00076 * 4 3 2 35 35 H 1.09003 * 109.46905 * 300.00510 * 4 3 2 36 36 H 0.96996 * 119.99468 * 179.97438 * 9 8 6 37 37 H 1.07997 * 119.75376 * 359.97438 * 17 16 14 38 38 H 1.08001 * 119.95097 * 179.97438 * 18 17 16 39 39 H 0.96699 * 113.99618 * 90.02312 * 22 21 20 40 40 H 1.08000 * 120.20794 * 359.96606 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4145 3.4233 -1.1779 7 1 4.0699 4.4222 -1.4013 8 6 5.2199 2.7464 -2.0867 9 7 5.8863 1.6799 -1.7066 10 14 5.3545 3.3533 -3.8482 11 1 6.4757 4.3212 -3.9540 12 1 5.6079 2.2016 -4.7507 13 1 4.0866 4.0198 -4.2404 14 6 4.1569 3.5041 1.1593 15 8 3.8434 2.9703 2.2064 16 6 4.6503 4.8930 1.1590 17 6 5.6252 5.2895 0.2325 18 6 6.0884 6.5701 0.2222 19 6 5.5920 7.5038 1.1402 20 7 5.8538 8.8145 1.3659 21 6 5.1155 9.2483 2.3562 22 8 5.1294 10.5112 2.8390 23 7 4.3317 8.2391 2.8294 24 1 3.6956 8.2981 3.5593 25 6 4.6132 7.1127 2.0730 26 6 4.1420 5.8136 2.0772 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9337 0.9286 -0.8892 35 1 3.9330 0.9288 0.8908 36 1 6.4479 1.2074 -2.3408 37 1 6.0116 4.5740 -0.4783 38 1 6.8397 6.8660 -0.4950 39 1 4.4987 11.1040 2.4078 40 1 3.3879 5.5113 2.7889 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152374732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:02 Heat of formation + Delta-G solvation = -27.035339 kcal Electronic energy + Delta-G solvation = -24496.025737 eV Core-core repulsion = 20889.930952 eV Total energy + Delta-G solvation = -3606.094785 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.15038 -40.77943 -38.92097 -37.32502 -36.97983 -35.55794 -34.26365 -33.41062 -31.05432 -30.83520 -29.22931 -26.91393 -25.25761 -23.68447 -23.55407 -22.60733 -21.95935 -21.19175 -19.97630 -19.56108 -18.40477 -18.09719 -17.16822 -16.84659 -16.65365 -16.22653 -15.84424 -15.73605 -15.23031 -15.08811 -14.89103 -14.78746 -14.28735 -14.01757 -13.74967 -13.53750 -13.12134 -13.04141 -12.85245 -12.77651 -12.47692 -12.43577 -12.11775 -12.02833 -11.94323 -11.80236 -11.76701 -11.39625 -11.11567 -10.91481 -10.45623 -9.44385 -9.32800 -9.09276 -8.28622 -6.08878 -0.31395 0.50297 1.30424 1.44961 1.52857 1.53647 1.62704 2.17694 2.34392 2.70138 2.88928 2.97088 3.17321 3.56579 4.05677 4.10540 4.12493 4.23124 4.28990 4.33750 4.37443 4.42038 4.55062 4.81785 4.86359 4.88614 5.01944 5.06361 5.10260 5.18339 5.28230 5.37394 5.41872 5.47561 5.48532 5.54642 5.65827 5.87586 5.94929 6.08185 6.44013 6.68148 6.72599 7.11334 7.53247 7.99359 8.74934 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.004626 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.932917 B = 6051.525412 C = 7497.213712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.117 4.117 4 C 0.129 3.871 5 N -0.435 5.435 6 C -0.347 4.347 7 H 0.092 0.908 8 C 0.016 3.984 9 N -0.887 5.887 10 Si 0.970 3.030 11 H -0.265 1.265 12 H -0.282 1.282 13 H -0.263 1.263 14 C 0.501 3.499 15 O -0.632 6.632 16 C -0.097 4.097 17 C -0.070 4.070 18 C -0.091 4.091 19 C 0.060 3.940 20 N -0.523 5.523 21 C 0.467 3.533 22 O -0.438 6.438 23 N -0.583 5.583 24 H 0.439 0.561 25 C 0.039 3.961 26 C -0.064 4.064 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.032 0.968 36 H 0.274 0.726 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.435 0.565 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.392 9.864 2.337 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.156 4.156 4 C 0.005 3.995 5 N -0.151 5.151 6 C -0.475 4.475 7 H 0.110 0.890 8 C -0.189 4.189 9 N -0.523 5.523 10 Si 0.793 3.207 11 H -0.190 1.190 12 H -0.207 1.207 13 H -0.187 1.187 14 C 0.292 3.708 15 O -0.521 6.521 16 C -0.102 4.102 17 C -0.091 4.091 18 C -0.111 4.111 19 C -0.059 4.059 20 N -0.256 5.256 21 C 0.162 3.838 22 O -0.244 6.244 23 N -0.209 5.209 24 H 0.282 0.718 25 C -0.070 4.070 26 C -0.086 4.086 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.298 0.702 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.389 9.819 2.639 11.507 hybrid contribution -0.858 -0.193 -0.126 0.888 sum -6.247 9.626 2.514 11.747 Atomic orbital electron populations 1.21711 0.94214 1.02318 1.01773 1.21414 0.97078 0.95104 1.01820 1.21803 0.95183 0.97937 1.00629 1.21248 0.93212 0.84168 1.00841 1.43470 1.54384 1.11952 1.05296 1.19517 1.30635 1.02610 0.94725 0.89029 1.26168 0.93279 0.96184 1.03245 1.70026 1.25690 1.19930 1.36630 0.85280 0.79418 0.78158 0.77833 1.19046 1.20732 1.18669 1.18731 0.80909 0.87512 0.83639 1.90583 1.57066 1.71763 1.32670 1.19661 0.99478 0.93191 0.97840 1.21443 0.94860 0.96061 0.96687 1.20068 1.01222 0.90976 0.98840 1.19099 0.97749 0.90854 0.98178 1.70541 1.27351 1.10647 1.17033 1.20342 0.89444 0.84471 0.89520 1.84786 1.64685 1.13394 1.61513 1.43168 1.37305 1.07981 1.32457 0.71845 1.18264 1.02396 0.89331 0.96990 1.19857 1.00780 0.88790 0.99190 0.92510 0.91133 0.93060 0.91787 0.92489 0.94047 0.92396 0.90224 0.94967 0.91622 0.83316 0.83812 0.70159 0.84958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.91 71.98 0.71 -2.92 16 2 C -0.12 -3.69 5.93 30.59 0.18 -3.51 16 3 C -0.12 -4.64 5.49 30.59 0.17 -4.47 16 4 C 0.13 6.09 4.83 86.38 0.42 6.51 16 5 N -0.44 -21.74 2.46 -639.27 -1.57 -23.31 16 6 C -0.35 -16.76 5.90 84.09 0.50 -16.26 16 7 H 0.09 4.33 6.96 -2.91 -0.02 4.31 16 8 C 0.02 0.76 4.64 84.95 0.39 1.16 16 9 N -0.89 -45.16 11.89 21.68 0.26 -44.90 16 10 Si 0.97 37.54 29.58 68.60 2.03 39.57 16 11 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 12 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 13 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 14 C 0.50 25.25 7.31 86.65 0.63 25.88 16 15 O -0.63 -34.42 16.48 -4.14 -0.07 -34.49 16 16 C -0.10 -4.24 5.47 -20.05 -0.11 -4.35 16 17 C -0.07 -2.89 7.88 22.27 0.18 -2.72 16 18 C -0.09 -3.33 10.03 22.23 0.22 -3.10 16 19 C 0.06 2.11 7.22 39.62 0.29 2.40 16 20 N -0.52 -16.81 11.29 -306.20 -3.46 -20.27 16 21 C 0.47 11.42 9.39 179.75 1.69 13.11 16 22 O -0.44 -6.96 13.62 -84.88 -1.16 -8.12 16 23 N -0.58 -13.63 6.27 -302.66 -1.90 -15.53 16 24 H 0.44 6.82 8.96 -92.71 -0.83 5.99 16 25 C 0.04 1.27 7.28 38.68 0.28 1.55 16 26 C -0.06 -2.38 9.62 22.59 0.22 -2.16 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.08 3.93 6.13 -2.38 -0.01 3.92 16 35 H 0.03 1.62 7.63 -2.39 -0.02 1.61 16 36 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 37 H 0.15 6.74 5.48 -2.91 -0.02 6.72 16 38 H 0.14 4.65 8.06 -2.91 -0.02 4.63 16 39 H 0.44 1.71 9.06 -74.06 -0.67 1.04 16 40 H 0.13 4.64 7.98 -2.91 -0.02 4.61 16 Total: -1.00 -67.04 339.38 -0.50 -67.54 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -0.40 Total: 28.40 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 5.77 Total: 11.11 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -6.67 Total: -104.01 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -1.22 Total: -42.61 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -67.04 -0.50 -67.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152374732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.505 kcal (2) G-P(sol) polarization free energy of solvation -67.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds