Wall clock time and date at job start Tue Mar 31 2020 08:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46808 * 2 1 4 4 H 1.08999 * 109.47106 * 305.36570 * 3 2 1 5 5 C 1.50702 * 109.46889 * 185.37103 * 3 2 1 6 6 H 1.08004 * 119.99944 * 244.79662 * 5 3 2 7 7 C 1.37873 * 120.00187 * 64.79566 * 5 3 2 8 8 N 1.31515 * 119.99871 * 7.04842 * 7 5 3 9 9 Si 1.86803 * 120.00139 * 187.04386 * 7 5 3 10 10 H 1.48491 * 109.47003 * 84.99341 * 9 7 5 11 11 H 1.48504 * 109.47072 * 204.99537 * 9 7 5 12 12 H 1.48495 * 109.46926 * 324.99099 * 9 7 5 13 13 N 1.46500 * 109.47312 * 65.37188 * 3 2 1 14 14 C 1.34778 * 119.99915 * 274.99725 * 13 3 2 15 15 O 1.21613 * 119.99681 * 0.02562 * 14 13 3 16 16 C 1.47392 * 120.00162 * 180.02562 * 14 13 3 17 17 N 1.31559 * 126.81828 * 0.02562 * 16 14 13 18 18 N 1.28376 * 111.97243 * 180.02562 * 17 16 14 19 19 H 0.97005 * 124.36520 * 180.02562 * 18 17 16 20 20 C 1.37059 * 111.25766 * 359.97438 * 18 17 16 21 21 C 1.39074 * 134.64419 * 180.02562 * 20 18 17 22 22 C 1.38159 * 119.63231 * 179.97438 * 21 20 18 23 23 O 1.35903 * 119.68451 * 179.97438 * 22 21 20 24 24 C 1.42907 * 116.99449 * 180.02562 * 23 22 21 25 25 C 1.39393 * 120.62039 * 359.97438 * 22 21 20 26 26 C 1.36595 * 120.48107 * 0.02562 * 25 22 21 27 27 C 1.39226 * 119.72524 * 359.69154 * 26 25 22 28 28 H 1.09002 * 109.46784 * 60.00411 * 1 2 3 29 29 H 1.08999 * 109.47328 * 300.00262 * 1 2 3 30 30 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47253 * 119.99337 * 2 1 3 32 32 H 1.08999 * 109.47328 * 239.99738 * 2 1 3 33 33 H 0.96998 * 120.00201 * 180.02562 * 8 7 5 34 34 H 0.96996 * 120.00012 * 95.00177 * 13 3 2 35 35 H 1.08000 * 120.18221 * 359.97438 * 21 20 18 36 36 H 1.08999 * 109.47101 * 299.99621 * 24 23 22 37 37 H 1.09001 * 109.47391 * 59.99559 * 24 23 22 38 38 H 1.09003 * 109.46842 * 179.97438 * 24 23 22 39 39 H 1.08001 * 119.76111 * 180.02562 * 25 22 21 40 40 H 1.08003 * 120.14054 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5411 1.4446 -0.1330 6 1 4.1542 1.8171 0.6744 7 6 4.1317 0.9711 -1.2853 8 7 3.3878 0.6475 -2.3204 9 14 5.9887 0.7892 -1.3763 10 1 6.3863 -0.5217 -0.8032 11 1 6.4243 0.8624 -2.7941 12 1 6.6315 1.8825 -0.6039 13 7 1.6600 2.0948 1.2556 14 6 0.4434 2.6615 1.3793 15 8 -0.3391 2.6308 0.4489 16 6 0.0614 3.3182 2.6423 17 7 0.7973 3.4296 3.7271 18 7 0.1818 4.0570 4.6628 19 1 0.5573 4.2402 5.5383 20 6 -1.0739 4.4356 4.2647 21 6 -2.1255 5.1186 4.8663 22 6 -3.2913 5.3383 4.1583 23 8 -4.3197 6.0051 4.7454 24 6 -5.4984 6.1999 3.9610 25 6 -3.4225 4.8826 2.8475 26 6 -2.3992 4.2102 2.2420 27 6 -1.2145 3.9844 2.9376 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.8033 0.3140 -3.1310 34 1 2.2841 2.1189 1.9977 35 1 -2.0312 5.4751 5.8814 36 1 -5.2498 6.7729 3.0678 37 1 -5.9052 5.2315 3.6699 38 1 -6.2392 6.7435 4.5474 39 1 -4.3399 5.0624 2.3067 40 1 -2.5067 3.8599 1.2260 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154473175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:30 Heat of formation + Delta-G solvation = 8.438060 kcal Electronic energy + Delta-G solvation = -24182.856954 eV Core-core repulsion = 20578.300411 eV Total energy + Delta-G solvation = -3604.556543 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.37855 -39.80058 -38.71239 -36.48014 -35.00145 -32.64449 -32.16350 -30.99565 -30.07205 -29.59614 -27.31619 -26.92321 -24.11148 -23.38731 -22.59828 -22.01114 -20.03756 -19.32902 -18.67754 -17.53972 -16.97184 -16.75685 -16.07422 -15.86004 -15.58566 -15.50876 -15.22142 -14.27648 -14.22288 -13.90909 -13.66929 -13.19782 -12.81514 -12.64763 -12.50416 -12.41452 -12.03607 -11.45571 -11.30835 -11.11574 -11.09925 -10.98708 -10.80419 -10.76606 -10.32317 -10.18193 -10.00828 -9.65713 -9.21277 -9.05837 -8.47828 -8.46219 -8.02647 -7.78052 -6.11202 -4.17072 0.85211 1.30514 2.11249 2.55256 3.18528 3.28012 3.34469 3.36378 3.54493 3.94532 4.04651 4.38553 4.50703 4.60643 4.73231 4.85446 4.89566 5.06910 5.09503 5.20224 5.22116 5.30070 5.68082 5.80288 6.03982 6.25412 6.36312 6.39289 6.44774 6.46582 6.64288 6.96962 7.04806 7.15569 7.20319 7.34821 7.42565 7.63581 7.73776 7.84545 7.94941 8.11040 8.69852 8.81112 9.11224 9.48765 10.96788 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.028799 B = 0.003153 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.006652 B = 8877.033141 C = 9415.829813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.268 3.732 4 H 0.058 0.942 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.689 5.689 14 C 0.587 3.413 15 O -0.537 6.537 16 C 0.034 3.966 17 N -0.217 5.217 18 N -0.423 5.423 19 H 0.445 0.555 20 C 0.103 3.897 21 C -0.170 4.170 22 C 0.159 3.841 23 O -0.318 6.318 24 C 0.027 3.973 25 C -0.224 4.224 26 C 0.006 3.994 27 C -0.144 4.144 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.023 0.977 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.264 0.736 34 H 0.395 0.605 35 H 0.134 0.866 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.135 0.865 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.577 8.801 14.163 21.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.167 3.833 4 H 0.076 0.924 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.726 3.274 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.336 5.336 14 C 0.369 3.631 15 O -0.413 6.413 16 C -0.140 4.140 17 N -0.045 5.045 18 N -0.141 5.141 19 H 0.290 0.710 20 C -0.011 4.011 21 C -0.193 4.193 22 C 0.111 3.889 23 O -0.230 6.230 24 C -0.068 4.068 25 C -0.244 4.244 26 C -0.015 4.015 27 C -0.151 4.151 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.228 0.772 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.117 0.883 39 H 0.152 0.848 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.063 8.484 13.864 20.853 hybrid contribution 0.663 0.169 0.363 0.774 sum -12.401 8.652 14.227 20.762 Atomic orbital electron populations 1.21855 0.98050 0.98238 1.01522 1.21862 0.92977 0.99717 1.01446 1.18877 0.94591 0.89086 0.80747 0.92406 1.21190 0.90554 1.43412 1.02199 0.91997 1.24872 0.98453 0.95102 0.95063 1.69965 1.35380 1.43158 1.03294 0.86511 0.85056 0.78636 0.77208 1.20445 1.21181 1.19908 1.46409 1.13836 1.54558 1.18832 1.16686 0.83323 0.79047 0.84072 1.90764 1.51420 1.60368 1.38775 1.23362 0.91819 1.04286 0.94495 1.72986 1.23460 1.10622 0.97471 1.42973 1.10100 1.46470 1.14585 0.71048 1.18690 0.88054 0.99876 0.94503 1.18762 0.90846 1.08406 1.01239 1.18534 0.87454 0.91838 0.91071 1.86031 1.23475 1.71549 1.41980 1.23092 0.85336 1.01688 0.96690 1.20925 1.01588 1.06883 0.95019 1.20237 0.89304 0.92107 0.99827 1.19412 0.95970 1.05777 0.93962 0.92880 0.94023 0.95743 0.94682 0.89778 0.92567 0.77194 0.84848 0.92353 0.92368 0.88265 0.84766 0.83684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.52 37.16 0.32 -2.76 16 2 C -0.12 -2.92 5.49 -26.73 -0.15 -3.06 16 3 C 0.27 6.78 2.11 -69.08 -0.15 6.63 16 4 H 0.06 1.68 7.55 -51.93 -0.39 1.29 16 5 C -0.54 -14.24 8.67 -34.44 -0.30 -14.54 16 6 H 0.06 1.59 7.73 -52.48 -0.41 1.19 16 7 C 0.07 1.85 5.19 -17.82 -0.09 1.76 16 8 N -0.88 -24.81 12.00 55.43 0.66 -24.15 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.71 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.69 -14.97 5.02 -56.02 -0.28 -15.26 16 14 C 0.59 12.33 6.40 -12.53 -0.08 12.25 16 15 O -0.54 -12.41 13.51 5.27 0.07 -12.34 16 16 C 0.03 0.60 7.32 -80.74 -0.59 0.01 16 17 N -0.22 -3.40 11.80 34.47 0.41 -3.00 16 18 N -0.42 -5.19 6.85 32.33 0.22 -4.97 16 19 H 0.44 3.58 8.96 -190.49 -1.71 1.87 16 20 C 0.10 1.37 7.37 -84.22 -0.62 0.75 16 21 C -0.17 -1.95 10.01 -39.30 -0.39 -2.34 16 22 C 0.16 1.82 6.68 -39.18 -0.26 1.56 16 23 O -0.32 -3.18 10.48 -19.44 -0.20 -3.38 16 24 C 0.03 0.17 9.80 101.05 0.99 1.16 16 25 C -0.22 -2.58 8.96 -39.74 -0.36 -2.93 16 26 C 0.01 0.08 9.85 -39.81 -0.39 -0.31 16 27 C -0.14 -2.29 6.34 -105.02 -0.67 -2.96 16 28 H 0.05 1.23 7.87 -51.93 -0.41 0.83 16 29 H 0.04 0.91 5.64 -51.93 -0.29 0.61 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 2.21 6.64 -51.93 -0.34 1.87 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.39 7.89 8.26 -40.82 -0.34 7.55 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.06 0.32 7.64 -51.93 -0.40 -0.07 16 37 H 0.06 0.32 7.64 -51.93 -0.40 -0.08 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.13 1.17 6.24 -52.49 -0.33 0.84 16 40 H 0.15 2.11 7.62 -52.48 -0.40 1.71 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -31.50 335.83 -8.06 -39.56 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.24 Total: 7.55 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -2.74 Total: -4.79 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 1.01 Total: -47.37 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.13 Total: -15.72 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.50 -8.06 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154473175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.994 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds