Wall clock time and date at job start Tue Mar 31 2020 08:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46808 * 2 1 4 4 H 1.08999 * 109.47106 * 305.36570 * 3 2 1 5 5 C 1.50702 * 109.46889 * 185.37103 * 3 2 1 6 6 H 1.08004 * 119.99944 * 244.79662 * 5 3 2 7 7 C 1.37873 * 120.00187 * 64.79566 * 5 3 2 8 8 N 1.31515 * 119.99871 * 7.04842 * 7 5 3 9 9 Si 1.86803 * 120.00139 * 187.04386 * 7 5 3 10 10 H 1.48491 * 109.47003 * 84.99341 * 9 7 5 11 11 H 1.48504 * 109.47072 * 204.99537 * 9 7 5 12 12 H 1.48495 * 109.46926 * 324.99099 * 9 7 5 13 13 N 1.46500 * 109.47312 * 65.37188 * 3 2 1 14 14 C 1.34778 * 119.99915 * 274.99725 * 13 3 2 15 15 O 1.21613 * 119.99681 * 0.02562 * 14 13 3 16 16 C 1.47392 * 120.00162 * 180.02562 * 14 13 3 17 17 N 1.31559 * 126.81828 * 0.02562 * 16 14 13 18 18 N 1.28376 * 111.97243 * 180.02562 * 17 16 14 19 19 H 0.97005 * 124.36520 * 180.02562 * 18 17 16 20 20 C 1.37059 * 111.25766 * 359.97438 * 18 17 16 21 21 C 1.39074 * 134.64419 * 180.02562 * 20 18 17 22 22 C 1.38159 * 119.63231 * 179.97438 * 21 20 18 23 23 O 1.35903 * 119.68451 * 179.97438 * 22 21 20 24 24 C 1.42907 * 116.99449 * 180.02562 * 23 22 21 25 25 C 1.39393 * 120.62039 * 359.97438 * 22 21 20 26 26 C 1.36595 * 120.48107 * 0.02562 * 25 22 21 27 27 C 1.39226 * 119.72524 * 359.69154 * 26 25 22 28 28 H 1.09002 * 109.46784 * 60.00411 * 1 2 3 29 29 H 1.08999 * 109.47328 * 300.00262 * 1 2 3 30 30 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47253 * 119.99337 * 2 1 3 32 32 H 1.08999 * 109.47328 * 239.99738 * 2 1 3 33 33 H 0.96998 * 120.00201 * 180.02562 * 8 7 5 34 34 H 0.96996 * 120.00012 * 95.00177 * 13 3 2 35 35 H 1.08000 * 120.18221 * 359.97438 * 21 20 18 36 36 H 1.08999 * 109.47101 * 299.99621 * 24 23 22 37 37 H 1.09001 * 109.47391 * 59.99559 * 24 23 22 38 38 H 1.09003 * 109.46842 * 179.97438 * 24 23 22 39 39 H 1.08001 * 119.76111 * 180.02562 * 25 22 21 40 40 H 1.08003 * 120.14054 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5411 1.4446 -0.1330 6 1 4.1542 1.8171 0.6744 7 6 4.1317 0.9711 -1.2853 8 7 3.3878 0.6475 -2.3204 9 14 5.9887 0.7892 -1.3763 10 1 6.3863 -0.5217 -0.8032 11 1 6.4243 0.8624 -2.7941 12 1 6.6315 1.8825 -0.6039 13 7 1.6600 2.0948 1.2556 14 6 0.4434 2.6615 1.3793 15 8 -0.3391 2.6308 0.4489 16 6 0.0614 3.3182 2.6423 17 7 0.7973 3.4296 3.7271 18 7 0.1818 4.0570 4.6628 19 1 0.5573 4.2402 5.5383 20 6 -1.0739 4.4356 4.2647 21 6 -2.1255 5.1186 4.8663 22 6 -3.2913 5.3383 4.1583 23 8 -4.3197 6.0051 4.7454 24 6 -5.4984 6.1999 3.9610 25 6 -3.4225 4.8826 2.8475 26 6 -2.3992 4.2102 2.2420 27 6 -1.2145 3.9844 2.9376 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.8033 0.3140 -3.1310 34 1 2.2841 2.1189 1.9977 35 1 -2.0312 5.4751 5.8814 36 1 -5.2498 6.7729 3.0678 37 1 -5.9052 5.2315 3.6699 38 1 -6.2392 6.7435 4.5474 39 1 -4.3399 5.0624 2.3067 40 1 -2.5067 3.8599 1.2260 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154473175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:29 Heat of formation + Delta-G solvation = -13.622521 kcal Electronic energy + Delta-G solvation = -24183.813573 eV Core-core repulsion = 20578.300411 eV Total energy + Delta-G solvation = -3605.513161 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.50080 -40.66240 -40.38859 -37.42346 -36.87935 -34.34251 -33.66044 -32.67865 -31.19122 -30.58163 -28.96615 -27.86211 -25.70168 -24.66450 -24.16600 -22.99761 -21.77039 -21.03713 -19.73512 -18.84307 -18.41287 -17.71845 -17.26769 -17.12758 -16.95837 -16.67523 -16.51167 -16.11391 -15.85646 -15.03444 -14.80178 -14.60827 -14.42876 -13.92417 -13.75830 -13.43608 -13.26422 -13.24602 -13.07840 -12.91470 -12.62086 -12.20388 -12.13437 -12.02751 -11.92068 -11.85462 -11.61557 -11.11544 -11.07697 -10.92827 -10.52447 -9.70777 -9.46739 -8.95732 -8.17425 -6.31126 -0.25420 0.30327 0.86822 1.45581 1.46580 1.56058 1.61084 2.26666 2.33254 2.43089 2.60121 2.70516 3.14067 3.34951 3.50257 3.80540 3.90755 4.12573 4.33284 4.41225 4.47167 4.47527 4.49797 4.56186 4.74198 4.78223 4.89072 5.02183 5.08524 5.22843 5.25411 5.36263 5.43502 5.46132 5.51920 5.61506 5.76941 5.88710 6.06774 6.08488 6.36153 6.69391 6.75620 6.99182 7.31860 7.48494 8.90966 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.028799 B = 0.003153 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.006652 B = 8877.033141 C = 9415.829813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.277 3.723 4 H 0.010 0.990 5 C -0.551 4.551 6 H 0.068 0.932 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.267 1.267 13 N -0.690 5.690 14 C 0.587 3.413 15 O -0.567 6.567 16 C -0.007 4.007 17 N -0.210 5.210 18 N -0.397 5.397 19 H 0.465 0.535 20 C 0.102 3.898 21 C -0.162 4.162 22 C 0.159 3.841 23 O -0.323 6.323 24 C 0.015 3.985 25 C -0.206 4.206 26 C -0.022 4.022 27 C -0.167 4.167 28 H 0.031 0.969 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.266 0.734 34 H 0.403 0.597 35 H 0.164 0.836 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.124 0.876 39 H 0.162 0.838 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.199 9.825 16.830 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.153 4.153 3 C 0.174 3.826 4 H 0.028 0.972 5 C -0.589 4.589 6 H 0.086 0.914 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.191 1.191 13 N -0.339 5.339 14 C 0.372 3.628 15 O -0.445 6.445 16 C -0.177 4.177 17 N -0.041 5.041 18 N -0.120 5.120 19 H 0.314 0.686 20 C -0.012 4.012 21 C -0.184 4.184 22 C 0.110 3.890 23 O -0.235 6.235 24 C -0.079 4.079 25 C -0.225 4.225 26 C -0.042 4.042 27 C -0.175 4.175 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.238 0.762 35 H 0.181 0.819 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.142 0.858 39 H 0.179 0.821 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.700 9.527 16.575 23.520 hybrid contribution 0.677 -0.015 -0.360 0.767 sum -13.023 9.513 16.215 22.869 Atomic orbital electron populations 1.21691 0.96600 0.99476 1.00505 1.21713 0.94189 0.98787 1.00573 1.18486 0.93967 0.89279 0.80833 0.97198 1.21517 0.91313 1.43458 1.02581 0.91353 1.25731 1.03151 0.94631 0.94598 1.70105 1.37374 1.43891 1.03843 0.85430 0.79266 0.78956 0.77132 1.19520 1.21130 1.19116 1.46174 1.14644 1.55100 1.17936 1.17028 0.82440 0.78299 0.85025 1.90731 1.52100 1.61338 1.40327 1.22745 0.93745 1.07202 0.94048 1.72865 1.23516 1.10259 0.97436 1.43007 1.09710 1.44594 1.14642 0.68595 1.18759 0.88630 1.00299 0.93557 1.19076 0.89969 1.06953 1.02366 1.18648 0.88054 0.91442 0.90819 1.86046 1.23967 1.70866 1.42652 1.23437 0.84417 1.02736 0.97353 1.21182 1.01499 1.04596 0.95219 1.20220 0.90119 0.94228 0.99653 1.19601 0.95807 1.06500 0.95573 0.94941 0.93959 0.93214 0.93661 0.92238 0.92521 0.76183 0.81895 0.91557 0.91506 0.85833 0.82082 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 8.52 71.98 0.61 -5.09 16 2 C -0.11 -5.65 5.49 30.59 0.17 -5.48 16 3 C 0.28 14.63 2.11 44.25 0.09 14.72 16 4 H 0.01 0.62 7.55 -2.39 -0.02 0.61 16 5 C -0.55 -29.95 8.67 25.60 0.22 -29.73 16 6 H 0.07 3.54 7.73 -2.91 -0.02 3.52 16 7 C 0.02 1.07 5.19 84.65 0.44 1.51 16 8 N -0.91 -53.11 12.00 21.45 0.26 -52.85 16 9 Si 0.97 42.78 29.54 68.60 2.03 44.81 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 13 N -0.69 -31.14 5.02 -449.40 -2.26 -33.39 16 14 C 0.59 25.83 6.40 86.65 0.55 26.39 16 15 O -0.57 -27.83 13.51 -4.07 -0.05 -27.88 16 16 C -0.01 -0.24 7.32 43.87 0.32 0.08 16 17 N -0.21 -6.44 11.80 -44.86 -0.53 -6.97 16 18 N -0.40 -8.96 6.85 -51.61 -0.35 -9.31 16 19 H 0.46 6.15 8.96 -220.03 -1.97 4.17 16 20 C 0.10 2.52 7.37 39.17 0.29 2.81 16 21 C -0.16 -3.20 10.01 22.45 0.22 -2.98 16 22 C 0.16 3.18 6.68 22.53 0.15 3.33 16 23 O -0.32 -5.32 10.48 -92.46 -0.97 -6.29 16 24 C 0.01 0.13 9.80 113.37 1.11 1.24 16 25 C -0.21 -4.36 8.96 22.16 0.20 -4.16 16 26 C -0.02 -0.62 9.85 22.12 0.22 -0.41 16 27 C -0.17 -5.34 6.34 -20.12 -0.13 -5.46 16 28 H 0.03 1.57 7.87 -2.39 -0.02 1.55 16 29 H 0.04 1.89 5.64 -2.39 -0.01 1.88 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 3.25 6.64 -2.39 -0.02 3.23 16 33 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 34 H 0.40 16.49 8.26 -92.71 -0.77 15.72 16 35 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 36 H 0.07 0.52 7.64 -2.39 -0.02 0.50 16 37 H 0.07 0.51 7.64 -2.39 -0.02 0.49 16 38 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.16 2.41 6.24 -2.91 -0.02 2.39 16 40 H 0.13 4.02 7.62 -2.91 -0.02 3.99 16 Total: -1.00 -70.73 335.83 0.96 -69.77 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: -1.64 Total: 25.35 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 4.48 Total: -3.23 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -2.88 Total: -102.53 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -1.02 Total: -34.17 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -70.73 0.96 -69.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154473175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.149 kcal (2) G-P(sol) polarization free energy of solvation -70.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds