Wall clock time and date at job start Tue Mar 31 2020 08:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47188 * 2 1 4 4 H 1.08999 * 109.46914 * 305.00894 * 3 2 1 5 5 C 1.50698 * 109.47256 * 185.00649 * 3 2 1 6 6 H 1.08004 * 119.99836 * 239.99982 * 5 3 2 7 7 C 1.37872 * 120.00406 * 60.00015 * 5 3 2 8 8 N 1.31516 * 119.99633 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00467 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46804 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47108 * 119.99821 * 9 7 5 12 12 H 1.48497 * 109.47347 * 240.00378 * 9 7 5 13 13 N 1.46498 * 109.46752 * 65.00494 * 3 2 1 14 14 C 1.34776 * 119.99808 * 274.99747 * 13 3 2 15 15 O 1.21595 * 120.00593 * 0.02562 * 14 13 3 16 16 C 1.47565 * 119.99803 * 180.02562 * 14 13 3 17 17 C 1.36475 * 125.90188 * 180.02562 * 16 14 13 18 18 N 1.36418 * 107.08247 * 179.97438 * 17 16 14 19 19 C 1.37334 * 107.33864 * 359.97438 * 18 17 16 20 20 C 1.41032 * 119.62363 * 180.02562 * 19 18 17 21 21 C 1.36105 * 119.47435 * 0.02562 * 20 19 18 22 22 C 1.40164 * 119.79336 * 0.02562 * 21 20 19 23 23 C 1.35773 * 120.26438 * 359.97438 * 22 21 20 24 24 O 1.35419 * 119.75037 * 180.02562 * 23 22 21 25 25 C 1.42894 * 116.99841 * 175.03947 * 24 23 22 26 26 N 1.32296 * 108.33594 * 0.02562 * 19 18 17 27 27 H 1.09002 * 109.47042 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46864 * 299.99281 * 1 2 3 29 29 H 1.08990 * 109.47645 * 59.99407 * 1 2 3 30 30 H 1.09001 * 109.46864 * 240.00719 * 2 1 3 31 31 H 1.08997 * 109.47635 * 120.00203 * 2 1 3 32 32 H 0.97003 * 119.99778 * 180.02562 * 8 7 5 33 33 H 0.96994 * 119.99948 * 95.00070 * 13 3 2 34 34 H 1.07992 * 126.45547 * 359.97438 * 17 16 14 35 35 H 1.08000 * 120.26261 * 179.73198 * 20 19 18 36 36 H 1.08002 * 120.10187 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.86704 * 179.97438 * 22 21 20 38 38 H 1.08997 * 109.47692 * 306.31766 * 25 24 23 39 39 H 1.09008 * 109.47118 * 66.32024 * 25 24 23 40 40 H 1.09004 * 109.47255 * 186.31647 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1240 6 1 4.1472 1.8889 0.6521 7 6 4.1432 0.8785 -1.2281 8 7 3.4060 0.3376 -2.1735 9 14 6.0048 0.8814 -1.3822 10 1 6.5987 1.5464 -0.1945 11 1 6.4969 -0.5173 -1.4634 12 1 6.3987 1.6170 -2.6105 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3671 15 8 -0.3416 2.6319 0.4322 16 6 0.0451 3.3244 2.6279 17 6 -1.1508 3.9334 2.8756 18 7 -1.1005 4.4106 4.1526 19 6 0.1310 4.0822 4.6641 20 6 0.4600 4.4559 5.9836 21 6 -0.4490 5.1373 6.7331 22 6 -1.6996 5.4595 6.1882 23 6 -2.0064 5.0951 4.9167 24 8 -3.2174 5.4122 4.4005 25 6 -3.4385 5.0975 3.0243 26 7 0.8075 3.4292 3.7334 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8291 -0.0608 -2.9501 33 1 2.2720 2.1230 1.9978 34 1 -1.9806 4.0210 2.1900 35 1 1.4239 4.1992 6.3977 36 1 -0.2079 5.4281 7.7449 37 1 -2.4220 5.9998 6.7820 38 1 -2.6443 5.5348 2.4193 39 1 -3.4400 4.0151 2.8947 40 1 -4.4002 5.5024 2.7089 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156605381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:26 Heat of formation + Delta-G solvation = 33.753968 kcal Electronic energy + Delta-G solvation = -24554.714956 eV Core-core repulsion = 20951.256194 eV Total energy + Delta-G solvation = -3603.458763 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.18919 -39.66925 -38.71278 -36.89150 -35.00687 -33.46378 -32.27785 -31.04940 -30.34499 -29.78528 -27.09648 -26.85879 -24.44064 -23.31150 -22.90761 -22.56883 -20.15776 -19.27498 -18.41424 -17.88019 -17.24493 -17.07910 -16.16470 -15.96505 -15.50298 -15.34596 -15.11910 -14.81690 -14.53060 -14.32202 -14.14185 -13.09592 -12.68304 -12.67875 -12.60907 -12.55946 -11.99087 -11.64001 -11.49605 -11.30461 -11.22455 -10.92910 -10.87359 -10.78893 -10.37650 -10.27081 -10.14031 -9.61179 -9.24591 -8.99845 -8.92220 -8.46461 -7.81227 -7.73824 -6.08522 -4.16980 0.54582 1.03032 2.04337 2.22511 2.51634 3.26203 3.27629 3.35353 3.39323 3.91815 4.03304 4.09543 4.32470 4.39558 4.54896 4.64486 4.72547 4.88604 4.94103 5.11426 5.22940 5.24153 5.36207 5.56870 5.78219 5.98036 6.01665 6.29269 6.42199 6.48504 6.49322 6.68873 6.87814 7.08785 7.21417 7.38589 7.45637 7.57718 7.69416 7.81115 7.94891 8.20882 8.71977 8.80990 9.13200 9.49905 10.97054 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.022943 B = 0.003525 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.132904 B = 7942.437176 C = 8754.739699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.684 5.684 14 C 0.581 3.419 15 O -0.547 6.547 16 C 0.034 3.966 17 C -0.070 4.070 18 N -0.398 5.398 19 C 0.253 3.747 20 C -0.113 4.113 21 C -0.066 4.066 22 C -0.190 4.190 23 C 0.297 3.703 24 O -0.301 6.301 25 C 0.003 3.997 26 N -0.463 5.463 27 H 0.023 0.977 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.032 0.968 32 H 0.263 0.737 33 H 0.399 0.601 34 H 0.207 0.793 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.623 9.798 16.335 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.330 5.330 14 C 0.363 3.637 15 O -0.426 6.426 16 C -0.098 4.098 17 C -0.201 4.201 18 N -0.082 5.082 19 C 0.008 3.992 20 C -0.133 4.133 21 C -0.089 4.089 22 C -0.212 4.212 23 C 0.151 3.849 24 O -0.210 6.210 25 C -0.091 4.091 26 N -0.185 5.185 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.232 0.768 34 H 0.223 0.777 35 H 0.173 0.827 36 H 0.166 0.834 37 H 0.174 0.826 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.571 9.424 15.502 21.518 hybrid contribution 0.448 0.178 -0.102 0.492 sum -11.123 9.602 15.400 21.286 Atomic orbital electron populations 1.21844 0.98412 0.98086 1.01160 1.21941 0.92598 0.99684 1.02442 1.18885 0.94454 0.89267 0.80705 0.93087 1.21286 0.90634 1.38782 1.06295 0.91861 1.24875 0.98643 0.94803 0.95347 1.69908 1.35007 1.37831 1.09359 0.86391 0.84866 0.77746 0.78111 1.19664 1.20888 1.20922 1.46383 1.13981 1.53840 1.18784 1.16880 0.83407 0.79137 0.84230 1.90765 1.51981 1.61066 1.38753 1.21269 0.91565 1.01937 0.95069 1.23386 1.03536 1.07463 0.85670 1.43534 1.14558 1.38045 1.12018 1.21068 0.81245 1.00523 0.96393 1.20243 1.02080 1.01885 0.89126 1.20757 0.91435 0.96461 1.00276 1.19874 1.00161 1.09490 0.91714 1.19316 0.81029 0.93874 0.90686 1.86177 1.27954 1.78279 1.28578 1.23932 1.04278 1.02194 0.78705 1.71010 1.29266 1.18726 0.99467 0.95793 0.94391 0.93075 0.88124 0.94881 0.92667 0.76777 0.77667 0.82734 0.83356 0.82629 0.90916 0.90885 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.51 37.16 0.32 -2.81 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.33 16 3 C 0.27 6.95 2.24 -69.08 -0.15 6.80 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.43 8.73 -34.44 -0.30 -14.73 16 6 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.91 11.29 55.43 0.63 -24.29 16 9 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.68 -15.49 5.02 -55.97 -0.28 -15.77 16 14 C 0.58 12.52 6.39 -12.46 -0.08 12.44 16 15 O -0.55 -12.80 14.00 5.28 0.07 -12.72 16 16 C 0.03 0.63 6.94 -83.44 -0.58 0.05 16 17 C -0.07 -1.05 9.02 -16.15 -0.15 -1.19 16 18 N -0.40 -5.39 2.94 -62.49 -0.18 -5.57 16 19 C 0.25 3.68 7.79 -155.99 -1.22 2.47 16 20 C -0.11 -1.19 10.11 -39.29 -0.40 -1.58 16 21 C -0.07 -0.51 10.05 -39.63 -0.40 -0.91 16 22 C -0.19 -1.63 9.90 -39.74 -0.39 -2.03 16 23 C 0.30 3.28 7.49 -16.19 -0.12 3.16 16 24 O -0.30 -2.98 10.45 -17.95 -0.19 -3.17 16 25 C 0.00 0.03 9.12 101.05 0.92 0.95 16 26 N -0.46 -8.14 11.01 -9.37 -0.10 -8.24 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.85 5.64 -51.93 -0.29 0.55 16 29 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 30 H 0.10 2.73 5.95 -51.93 -0.31 2.43 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.40 8.55 8.23 -40.82 -0.34 8.22 16 34 H 0.21 2.60 4.57 -52.49 -0.24 2.36 16 35 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.07 0.63 6.36 -51.93 -0.33 0.30 16 39 H 0.07 0.61 6.44 -51.92 -0.33 0.27 16 40 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 329.88 15.07 4.97 4.97 Total: -1.00 -32.18 329.88 -7.61 -39.79 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -4.72 Total: 8.06 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -2.79 Total: 0.99 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.06 Total: -53.87 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.11 Total: -15.89 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.18 -7.61 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156605381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.546 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds