Wall clock time and date at job start Tue Mar 31 2020 08:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47188 * 2 1 4 4 H 1.08999 * 109.46914 * 305.00894 * 3 2 1 5 5 C 1.50698 * 109.47256 * 185.00649 * 3 2 1 6 6 H 1.08004 * 119.99836 * 239.99982 * 5 3 2 7 7 C 1.37872 * 120.00406 * 60.00015 * 5 3 2 8 8 N 1.31516 * 119.99633 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00467 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46804 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47108 * 119.99821 * 9 7 5 12 12 H 1.48497 * 109.47347 * 240.00378 * 9 7 5 13 13 N 1.46498 * 109.46752 * 65.00494 * 3 2 1 14 14 C 1.34776 * 119.99808 * 274.99747 * 13 3 2 15 15 O 1.21595 * 120.00593 * 0.02562 * 14 13 3 16 16 C 1.47565 * 119.99803 * 180.02562 * 14 13 3 17 17 C 1.36475 * 125.90188 * 180.02562 * 16 14 13 18 18 N 1.36418 * 107.08247 * 179.97438 * 17 16 14 19 19 C 1.37334 * 107.33864 * 359.97438 * 18 17 16 20 20 C 1.41032 * 119.62363 * 180.02562 * 19 18 17 21 21 C 1.36105 * 119.47435 * 0.02562 * 20 19 18 22 22 C 1.40164 * 119.79336 * 0.02562 * 21 20 19 23 23 C 1.35773 * 120.26438 * 359.97438 * 22 21 20 24 24 O 1.35419 * 119.75037 * 180.02562 * 23 22 21 25 25 C 1.42894 * 116.99841 * 175.03947 * 24 23 22 26 26 N 1.32296 * 108.33594 * 0.02562 * 19 18 17 27 27 H 1.09002 * 109.47042 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46864 * 299.99281 * 1 2 3 29 29 H 1.08990 * 109.47645 * 59.99407 * 1 2 3 30 30 H 1.09001 * 109.46864 * 240.00719 * 2 1 3 31 31 H 1.08997 * 109.47635 * 120.00203 * 2 1 3 32 32 H 0.97003 * 119.99778 * 180.02562 * 8 7 5 33 33 H 0.96994 * 119.99948 * 95.00070 * 13 3 2 34 34 H 1.07992 * 126.45547 * 359.97438 * 17 16 14 35 35 H 1.08000 * 120.26261 * 179.73198 * 20 19 18 36 36 H 1.08002 * 120.10187 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.86704 * 179.97438 * 22 21 20 38 38 H 1.08997 * 109.47692 * 306.31766 * 25 24 23 39 39 H 1.09008 * 109.47118 * 66.32024 * 25 24 23 40 40 H 1.09004 * 109.47255 * 186.31647 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1240 6 1 4.1472 1.8889 0.6521 7 6 4.1432 0.8785 -1.2281 8 7 3.4060 0.3376 -2.1735 9 14 6.0048 0.8814 -1.3822 10 1 6.5987 1.5464 -0.1945 11 1 6.4969 -0.5173 -1.4634 12 1 6.3987 1.6170 -2.6105 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3671 15 8 -0.3416 2.6319 0.4322 16 6 0.0451 3.3244 2.6279 17 6 -1.1508 3.9334 2.8756 18 7 -1.1005 4.4106 4.1526 19 6 0.1310 4.0822 4.6641 20 6 0.4600 4.4559 5.9836 21 6 -0.4490 5.1373 6.7331 22 6 -1.6996 5.4595 6.1882 23 6 -2.0064 5.0951 4.9167 24 8 -3.2174 5.4122 4.4005 25 6 -3.4385 5.0975 3.0243 26 7 0.8075 3.4292 3.7334 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8291 -0.0608 -2.9501 33 1 2.2720 2.1230 1.9978 34 1 -1.9806 4.0210 2.1900 35 1 1.4239 4.1992 6.3977 36 1 -0.2079 5.4281 7.7449 37 1 -2.4220 5.9998 6.7820 38 1 -2.6443 5.5348 2.4193 39 1 -3.4400 4.0151 2.8947 40 1 -4.4002 5.5024 2.7089 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156605381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:25 Heat of formation + Delta-G solvation = 11.755926 kcal Electronic energy + Delta-G solvation = -24555.668863 eV Core-core repulsion = 20951.256194 eV Total energy + Delta-G solvation = -3604.412669 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -44.20951 -40.82443 -40.09258 -37.80198 -36.92580 -34.59252 -34.15172 -32.83673 -31.36336 -30.77530 -29.02755 -27.69733 -25.86457 -24.72054 -24.01409 -23.83720 -21.89257 -21.09201 -19.47923 -18.94103 -18.57787 -17.97021 -17.57676 -17.33852 -16.85475 -16.52037 -16.48246 -16.10284 -15.86026 -15.60560 -15.34092 -14.82860 -14.60960 -13.96375 -13.55456 -13.35166 -13.31606 -13.26277 -13.19600 -12.89872 -12.70588 -12.38722 -12.18269 -12.13416 -12.09288 -11.84320 -11.61820 -11.55072 -11.06898 -10.98441 -10.55171 -10.03154 -9.65269 -8.67882 -8.17421 -6.34410 -0.35387 0.09550 0.98972 1.07824 1.43634 1.44426 1.57152 1.79635 2.29078 2.34126 2.54466 2.57495 3.01486 3.11751 3.41194 3.59871 3.93423 3.97383 4.04593 4.17041 4.21793 4.43675 4.47862 4.51653 4.54978 4.63167 4.72855 4.92309 5.03408 5.11090 5.22531 5.26112 5.41195 5.46025 5.50054 5.53674 5.58696 5.76191 5.85695 6.01945 6.13658 6.50204 6.71090 6.93124 7.28156 7.44567 8.88409 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.022943 B = 0.003525 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.132904 B = 7942.437176 C = 8754.739699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.007 0.993 5 C -0.551 4.551 6 H 0.065 0.935 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.971 3.029 10 H -0.265 1.265 11 H -0.275 1.275 12 H -0.280 1.280 13 N -0.687 5.687 14 C 0.582 3.418 15 O -0.574 6.574 16 C -0.003 4.003 17 C -0.059 4.059 18 N -0.398 5.398 19 C 0.247 3.753 20 C -0.138 4.138 21 C -0.032 4.032 22 C -0.172 4.172 23 C 0.270 3.730 24 O -0.301 6.301 25 C -0.002 4.002 26 N -0.503 5.503 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.267 0.733 33 H 0.403 0.597 34 H 0.223 0.777 35 H 0.171 0.829 36 H 0.198 0.802 37 H 0.192 0.808 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.148 11.186 19.564 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.025 0.975 5 C -0.590 4.590 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.796 3.204 10 H -0.189 1.189 11 H -0.201 1.201 12 H -0.206 1.206 13 N -0.334 5.334 14 C 0.367 3.633 15 O -0.455 6.455 16 C -0.135 4.135 17 C -0.192 4.192 18 N -0.080 5.080 19 C 0.001 3.999 20 C -0.158 4.158 21 C -0.055 4.055 22 C -0.193 4.193 23 C 0.125 3.875 24 O -0.210 6.210 25 C -0.095 4.095 26 N -0.225 5.225 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.238 0.762 34 H 0.239 0.761 35 H 0.188 0.812 36 H 0.215 0.785 37 H 0.209 0.791 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.113 10.828 18.763 24.820 hybrid contribution 0.465 -0.107 -0.917 1.033 sum -11.648 10.720 17.847 23.856 Atomic orbital electron populations 1.21677 0.96778 0.99368 1.00262 1.21790 0.93994 0.98830 1.01358 1.18515 0.93931 0.89395 0.80744 0.97549 1.21563 0.91331 1.39255 1.06804 0.91695 1.25733 1.03427 0.94169 0.94811 1.70038 1.36975 1.38191 1.09800 0.85308 0.78964 0.77988 0.78143 1.18937 1.20095 1.20623 1.46179 1.14859 1.54499 1.17837 1.17266 0.82457 0.78313 0.85254 1.90724 1.52511 1.62015 1.40220 1.20720 0.93536 1.04724 0.94491 1.23540 1.02678 1.06290 0.86673 1.43603 1.14942 1.38022 1.11473 1.21680 0.81259 0.99675 0.97257 1.20636 1.03913 1.03510 0.87764 1.21368 0.89776 0.92818 1.01556 1.20565 1.00909 1.07289 0.90575 1.19912 0.81337 0.94803 0.91472 1.86184 1.27316 1.78262 1.29231 1.24043 1.05548 1.02006 0.77934 1.70873 1.30515 1.21141 1.00013 0.93271 0.94381 0.94809 0.90376 0.94489 0.92422 0.76211 0.76124 0.81171 0.78501 0.79058 0.91866 0.91482 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.51 71.98 0.61 -5.18 16 2 C -0.12 -6.26 5.45 30.59 0.17 -6.10 16 3 C 0.28 15.12 2.24 44.25 0.10 15.22 16 4 H 0.01 0.42 7.58 -2.39 -0.02 0.40 16 5 C -0.55 -30.95 8.73 25.60 0.22 -30.73 16 6 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 1.05 5.29 84.65 0.45 1.50 16 8 N -0.91 -52.96 11.29 21.45 0.24 -52.71 16 9 Si 0.97 43.53 29.54 68.60 2.03 45.55 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 N -0.69 -32.89 5.02 -449.24 -2.25 -35.15 16 14 C 0.58 26.55 6.39 86.70 0.55 27.11 16 15 O -0.57 -28.47 14.00 -4.02 -0.06 -28.53 16 16 C 0.00 -0.13 6.94 40.75 0.28 0.16 16 17 C -0.06 -1.83 9.02 83.57 0.75 -1.07 16 18 N -0.40 -10.43 2.94 -462.18 -1.36 -11.79 16 19 C 0.25 7.03 7.79 134.13 1.05 8.07 16 20 C -0.14 -2.53 10.11 22.46 0.23 -2.30 16 21 C -0.03 -0.34 10.05 22.24 0.22 -0.11 16 22 C -0.17 -2.14 9.90 22.17 0.22 -1.92 16 23 C 0.27 5.28 7.49 83.34 0.62 5.90 16 24 O -0.30 -5.24 10.45 -87.14 -0.91 -6.15 16 25 C 0.00 -0.02 9.12 113.37 1.03 1.01 16 26 N -0.50 -18.21 11.01 -183.55 -2.02 -20.23 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.04 1.76 5.64 -2.39 -0.01 1.74 16 29 H 0.03 1.66 7.84 -2.39 -0.02 1.64 16 30 H 0.08 4.42 5.95 -2.39 -0.01 4.41 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.40 18.28 8.23 -92.71 -0.76 17.52 16 34 H 0.22 5.77 4.57 -2.91 -0.01 5.76 16 35 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 36 H 0.20 0.24 8.06 -2.91 -0.02 0.22 16 37 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.06 1.06 6.36 -2.39 -0.02 1.05 16 39 H 0.07 1.07 6.44 -2.38 -0.02 1.06 16 40 H 0.14 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -74.11 329.88 2.51 -71.60 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.33 Total: 25.85 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 6.51 Total: 11.56 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -5.39 Total: -119.88 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.97 Total: -34.68 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -74.11 2.51 -71.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156605381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.360 kcal (2) G-P(sol) polarization free energy of solvation -74.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds