Wall clock time and date at job start Tue Mar 31 2020 08:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46808 * 2 1 4 4 H 1.08999 * 109.47106 * 305.36570 * 3 2 1 5 5 C 1.50702 * 109.46889 * 185.37103 * 3 2 1 6 6 H 1.08004 * 119.99944 * 244.79662 * 5 3 2 7 7 C 1.37873 * 120.00187 * 64.79566 * 5 3 2 8 8 N 1.31515 * 119.99871 * 7.04842 * 7 5 3 9 9 Si 1.86803 * 120.00139 * 187.04386 * 7 5 3 10 10 H 1.48491 * 109.47003 * 84.99341 * 9 7 5 11 11 H 1.48504 * 109.47072 * 204.99537 * 9 7 5 12 12 H 1.48495 * 109.46926 * 324.99099 * 9 7 5 13 13 N 1.46500 * 109.47312 * 65.37188 * 3 2 1 14 14 C 1.34778 * 119.99915 * 274.99725 * 13 3 2 15 15 O 1.21597 * 119.99945 * 0.02562 * 14 13 3 16 16 C 1.47572 * 120.00184 * 180.02562 * 14 13 3 17 17 C 1.36631 * 125.93139 * 179.71763 * 16 14 13 18 18 N 1.36142 * 107.10316 * 179.87440 * 17 16 14 19 19 C 1.36874 * 132.23957 * 180.10102 * 18 17 16 20 20 C 1.35268 * 120.56434 * 180.30879 * 19 18 17 21 21 O 1.36029 * 119.88297 * 179.97438 * 20 19 18 22 22 C 1.42907 * 116.99831 * 180.02562 * 21 20 19 23 23 C 1.40911 * 120.23217 * 0.02562 * 20 19 18 24 24 C 1.35843 * 119.70580 * 359.97438 * 23 20 19 25 25 C 1.37189 * 107.36851 * 0.38037 * 18 17 16 26 26 N 1.32318 * 108.37302 * 359.76101 * 25 18 17 27 27 H 1.09002 * 109.46784 * 60.00411 * 1 2 3 28 28 H 1.08999 * 109.47328 * 300.00262 * 1 2 3 29 29 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47253 * 119.99337 * 2 1 3 31 31 H 1.08999 * 109.47328 * 239.99738 * 2 1 3 32 32 H 0.96998 * 120.00201 * 180.02562 * 8 7 5 33 33 H 0.96996 * 120.00012 * 95.00177 * 13 3 2 34 34 H 1.08005 * 126.44715 * 0.02562 * 17 16 14 35 35 H 1.07996 * 119.71552 * 0.33452 * 19 18 17 36 36 H 1.08994 * 109.47313 * 180.02562 * 22 21 20 37 37 H 1.09002 * 109.46868 * 299.99952 * 22 21 20 38 38 H 1.08995 * 109.47346 * 59.99966 * 22 21 20 39 39 H 1.07997 * 120.14699 * 180.02562 * 23 20 19 40 40 H 1.07999 * 120.27744 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5411 1.4446 -0.1330 6 1 4.1542 1.8171 0.6744 7 6 4.1317 0.9711 -1.2853 8 7 3.3878 0.6475 -2.3204 9 14 5.9887 0.7892 -1.3763 10 1 6.3863 -0.5217 -0.8032 11 1 6.4243 0.8624 -2.7941 12 1 6.6315 1.8825 -0.6039 13 7 1.6600 2.0948 1.2556 14 6 0.4434 2.6615 1.3793 15 8 -0.3390 2.6309 0.4490 16 6 0.0609 3.3190 2.6438 17 6 -1.1325 3.9335 2.8990 18 7 -1.0762 4.4031 4.1756 19 6 -1.9777 5.0881 4.9446 20 6 -1.6668 5.4511 6.2100 21 8 -2.5731 6.1321 6.9619 22 6 -2.1801 6.4852 8.2897 23 6 -0.4069 5.1273 6.7518 24 6 0.4956 4.4476 5.9976 25 6 0.1572 4.0747 4.6787 26 7 0.8289 3.4226 3.7437 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.8033 0.3140 -3.1310 33 1 2.2841 2.1189 1.9977 34 1 -1.9649 4.0268 2.2171 35 1 -2.9457 5.3406 4.5377 36 1 -2.9927 7.0226 8.7784 37 1 -1.9521 5.5807 8.8537 38 1 -1.2957 7.1211 8.2499 39 1 -0.1603 5.4174 7.7624 40 1 1.4637 4.1943 6.4037 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157088232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:23 Heat of formation + Delta-G solvation = 16.763773 kcal Electronic energy + Delta-G solvation = -23951.781676 eV Core-core repulsion = 20347.586163 eV Total energy + Delta-G solvation = -3604.195513 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.88877 -39.93155 -38.69812 -36.24994 -34.92845 -33.87219 -32.23922 -31.02886 -30.05075 -29.20535 -27.27475 -26.90795 -24.56660 -23.20014 -22.51495 -22.35585 -20.15543 -19.24934 -18.63297 -18.16601 -17.01033 -16.52012 -16.47909 -15.69048 -15.63362 -15.28496 -15.24847 -14.71477 -14.29749 -14.20413 -14.04204 -13.37120 -13.00098 -12.81568 -12.61925 -12.53018 -11.98798 -11.63486 -11.42767 -11.29673 -11.25962 -10.94803 -10.82501 -10.70609 -10.32878 -10.25785 -10.12115 -9.62171 -9.14804 -9.00868 -8.57774 -8.41781 -7.97672 -7.72976 -6.06932 -4.12397 0.43483 1.08298 2.08184 2.31149 3.09234 3.20983 3.31189 3.37242 3.39740 3.89802 4.07971 4.12216 4.22337 4.42108 4.54778 4.67892 4.68927 4.70887 4.80099 5.01199 5.26230 5.31312 5.43555 5.53424 5.64230 5.73685 6.09549 6.42937 6.45438 6.48871 6.61912 6.68614 6.95159 7.09093 7.24250 7.40190 7.49269 7.61364 7.73507 7.82762 7.95193 8.16074 8.78469 8.86538 9.20211 9.53439 11.01135 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.027915 B = 0.002964 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.798000 B = 9445.588971 C =10136.440568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.267 3.733 4 H 0.057 0.943 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.686 5.686 14 C 0.583 3.417 15 O -0.545 6.545 16 C 0.021 3.979 17 C -0.017 4.017 18 N -0.343 5.343 19 C 0.002 3.998 20 C 0.103 3.897 21 O -0.310 6.310 22 C 0.029 3.971 23 C -0.174 4.174 24 C -0.028 4.028 25 C 0.192 3.808 26 N -0.451 5.451 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.023 0.977 30 H 0.034 0.966 31 H 0.083 0.917 32 H 0.264 0.736 33 H 0.397 0.603 34 H 0.197 0.803 35 H 0.170 0.830 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.148 0.852 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.341 10.209 21.235 25.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.166 3.834 4 H 0.075 0.925 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.726 3.274 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.332 5.332 14 C 0.366 3.634 15 O -0.424 6.424 16 C -0.115 4.115 17 C -0.153 4.153 18 N -0.016 5.016 19 C -0.120 4.120 20 C 0.055 3.945 21 O -0.223 6.223 22 C -0.066 4.066 23 C -0.197 4.197 24 C -0.048 4.048 25 C -0.052 4.052 26 N -0.173 5.173 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.231 0.769 34 H 0.213 0.787 35 H 0.187 0.813 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.166 0.834 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.288 9.846 20.325 24.817 hybrid contribution 0.616 0.222 0.458 0.800 sum -9.672 10.068 20.783 25.037 Atomic orbital electron populations 1.21849 0.98094 0.98160 1.01493 1.21858 0.92949 0.99766 1.01408 1.18868 0.94574 0.89082 0.80890 0.92526 1.21205 0.90600 1.43209 1.02156 0.91971 1.24878 0.98444 0.95155 0.95074 1.69970 1.35345 1.43309 1.03290 0.86509 0.85103 0.78636 0.77149 1.20459 1.21222 1.19890 1.46351 1.13985 1.54209 1.18704 1.16864 0.83340 0.79019 0.84217 1.90774 1.51585 1.60881 1.39162 1.21183 0.91780 1.03309 0.95185 1.22654 1.02677 1.05321 0.84696 1.42278 1.12814 1.35324 1.11150 1.20122 0.96707 1.03889 0.91260 1.17809 0.89461 0.96339 0.90861 1.86064 1.39367 1.70437 1.26456 1.23122 1.02429 1.00479 0.80610 1.21237 0.93261 1.03415 1.01828 1.20192 1.00546 0.95525 0.88545 1.20925 0.83459 1.04035 0.96763 1.70892 1.29444 1.17588 0.99339 0.92922 0.94053 0.95782 0.94682 0.89811 0.92621 0.76896 0.78656 0.81297 0.87850 0.92340 0.92323 0.83443 0.82365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.52 37.16 0.32 -2.84 16 2 C -0.12 -3.00 5.49 -26.73 -0.15 -3.15 16 3 C 0.27 6.98 2.11 -69.08 -0.15 6.84 16 4 H 0.06 1.69 7.55 -51.93 -0.39 1.30 16 5 C -0.53 -14.58 8.67 -34.44 -0.30 -14.88 16 6 H 0.06 1.65 7.73 -52.48 -0.41 1.25 16 7 C 0.07 1.87 5.19 -17.82 -0.09 1.78 16 8 N -0.88 -25.31 12.00 55.43 0.66 -24.64 16 9 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.69 -15.65 5.02 -55.96 -0.28 -15.93 16 14 C 0.58 12.72 6.40 -12.45 -0.08 12.64 16 15 O -0.55 -13.06 14.01 5.28 0.07 -12.98 16 16 C 0.02 0.38 6.94 -83.45 -0.58 -0.20 16 17 C -0.02 -0.27 11.47 -16.22 -0.19 -0.45 16 18 N -0.34 -4.61 2.93 -62.22 -0.18 -4.79 16 19 C 0.00 0.02 10.86 -16.36 -0.18 -0.16 16 20 C 0.10 0.93 6.63 -39.63 -0.26 0.67 16 21 O -0.31 -2.41 10.48 -19.83 -0.21 -2.62 16 22 C 0.03 0.11 9.81 101.05 0.99 1.10 16 23 C -0.17 -1.37 9.02 -39.43 -0.36 -1.73 16 24 C -0.03 -0.28 10.10 -39.33 -0.40 -0.68 16 25 C 0.19 2.76 7.79 -156.05 -1.22 1.54 16 26 N -0.45 -7.87 11.01 -9.36 -0.10 -7.97 16 27 H 0.05 1.26 7.87 -51.93 -0.41 0.85 16 28 H 0.04 0.93 5.64 -51.93 -0.29 0.64 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 2.26 6.64 -51.93 -0.34 1.91 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 33 H 0.40 8.53 8.22 -40.82 -0.34 8.19 16 34 H 0.20 2.54 8.06 -52.48 -0.42 2.11 16 35 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.06 0.17 7.67 -51.93 -0.40 -0.23 16 38 H 0.06 0.17 7.67 -51.93 -0.40 -0.23 16 39 H 0.15 0.66 6.36 -52.49 -0.33 0.33 16 40 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 337.57 15.07 5.09 5.09 Total: -1.00 -33.04 337.57 -7.58 -40.62 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -4.98 Total: 6.67 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.63 Total: 0.48 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.10 Total: -53.34 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.13 Total: -15.61 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.04 -7.58 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157088232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.381 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds