Wall clock time and date at job start Tue Mar 31 2020 08:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46808 * 2 1 4 4 H 1.08999 * 109.47106 * 305.36570 * 3 2 1 5 5 C 1.50702 * 109.46889 * 185.37103 * 3 2 1 6 6 H 1.08004 * 119.99944 * 244.79662 * 5 3 2 7 7 C 1.37873 * 120.00187 * 64.79566 * 5 3 2 8 8 N 1.31515 * 119.99871 * 7.04842 * 7 5 3 9 9 Si 1.86803 * 120.00139 * 187.04386 * 7 5 3 10 10 H 1.48491 * 109.47003 * 84.99341 * 9 7 5 11 11 H 1.48504 * 109.47072 * 204.99537 * 9 7 5 12 12 H 1.48495 * 109.46926 * 324.99099 * 9 7 5 13 13 N 1.46500 * 109.47312 * 65.37188 * 3 2 1 14 14 C 1.34778 * 119.99915 * 274.99725 * 13 3 2 15 15 O 1.21597 * 119.99945 * 0.02562 * 14 13 3 16 16 C 1.47572 * 120.00184 * 180.02562 * 14 13 3 17 17 C 1.36631 * 125.93139 * 179.71763 * 16 14 13 18 18 N 1.36142 * 107.10316 * 179.87440 * 17 16 14 19 19 C 1.36874 * 132.23957 * 180.10102 * 18 17 16 20 20 C 1.35268 * 120.56434 * 180.30879 * 19 18 17 21 21 O 1.36029 * 119.88297 * 179.97438 * 20 19 18 22 22 C 1.42907 * 116.99831 * 180.02562 * 21 20 19 23 23 C 1.40911 * 120.23217 * 0.02562 * 20 19 18 24 24 C 1.35843 * 119.70580 * 359.97438 * 23 20 19 25 25 C 1.37189 * 107.36851 * 0.38037 * 18 17 16 26 26 N 1.32318 * 108.37302 * 359.76101 * 25 18 17 27 27 H 1.09002 * 109.46784 * 60.00411 * 1 2 3 28 28 H 1.08999 * 109.47328 * 300.00262 * 1 2 3 29 29 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47253 * 119.99337 * 2 1 3 31 31 H 1.08999 * 109.47328 * 239.99738 * 2 1 3 32 32 H 0.96998 * 120.00201 * 180.02562 * 8 7 5 33 33 H 0.96996 * 120.00012 * 95.00177 * 13 3 2 34 34 H 1.08005 * 126.44715 * 0.02562 * 17 16 14 35 35 H 1.07996 * 119.71552 * 0.33452 * 19 18 17 36 36 H 1.08994 * 109.47313 * 180.02562 * 22 21 20 37 37 H 1.09002 * 109.46868 * 299.99952 * 22 21 20 38 38 H 1.08995 * 109.47346 * 59.99966 * 22 21 20 39 39 H 1.07997 * 120.14699 * 180.02562 * 23 20 19 40 40 H 1.07999 * 120.27744 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5411 1.4446 -0.1330 6 1 4.1542 1.8171 0.6744 7 6 4.1317 0.9711 -1.2853 8 7 3.3878 0.6475 -2.3204 9 14 5.9887 0.7892 -1.3763 10 1 6.3863 -0.5217 -0.8032 11 1 6.4243 0.8624 -2.7941 12 1 6.6315 1.8825 -0.6039 13 7 1.6600 2.0948 1.2556 14 6 0.4434 2.6615 1.3793 15 8 -0.3390 2.6309 0.4490 16 6 0.0609 3.3190 2.6438 17 6 -1.1325 3.9335 2.8990 18 7 -1.0762 4.4031 4.1756 19 6 -1.9777 5.0881 4.9446 20 6 -1.6668 5.4511 6.2100 21 8 -2.5731 6.1321 6.9619 22 6 -2.1801 6.4852 8.2897 23 6 -0.4069 5.1273 6.7518 24 6 0.4956 4.4476 5.9976 25 6 0.1572 4.0747 4.6787 26 7 0.8289 3.4226 3.7437 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.8033 0.3140 -3.1310 33 1 2.2841 2.1189 1.9977 34 1 -1.9649 4.0268 2.2171 35 1 -2.9457 5.3406 4.5377 36 1 -2.9927 7.0226 8.7784 37 1 -1.9521 5.5807 8.8537 38 1 -1.2957 7.1211 8.2499 39 1 -0.1603 5.4174 7.7624 40 1 1.4637 4.1943 6.4037 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157088232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:22 Heat of formation + Delta-G solvation = -5.389390 kcal Electronic energy + Delta-G solvation = -23952.742309 eV Core-core repulsion = 20347.586163 eV Total energy + Delta-G solvation = -3605.156146 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.93125 -40.80153 -40.24122 -37.23561 -36.80390 -34.82144 -34.23143 -32.87849 -30.97872 -30.23671 -28.96401 -27.70866 -25.86253 -24.80558 -23.79243 -23.37753 -21.84602 -21.05610 -19.55269 -19.29548 -18.31460 -17.79365 -17.36866 -17.14775 -16.78134 -16.49990 -16.32356 -16.12448 -15.96111 -15.48366 -14.95465 -14.83116 -14.57797 -14.08636 -13.92411 -13.46141 -13.29992 -13.26109 -13.01409 -12.91213 -12.62219 -12.26654 -12.21687 -12.17686 -12.08652 -11.65696 -11.55620 -11.46823 -11.08413 -10.91355 -10.53134 -9.76249 -9.49855 -8.88609 -8.17881 -6.31784 -0.40341 0.13370 1.04440 1.20263 1.44825 1.46325 1.56115 2.27687 2.34999 2.40775 2.59523 2.59648 3.02986 3.13191 3.47719 3.67946 3.79423 3.98545 4.14576 4.32013 4.41447 4.48114 4.48383 4.54707 4.70011 4.72420 4.74573 4.84543 4.96163 5.06398 5.21524 5.24890 5.29327 5.42751 5.51701 5.61240 5.75129 5.79715 5.91088 6.07978 6.21331 6.54487 6.74777 6.98864 7.31790 7.49816 8.90626 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.027915 B = 0.002964 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.798000 B = 9445.588971 C =10136.440568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.276 3.724 4 H 0.009 0.991 5 C -0.551 4.551 6 H 0.066 0.934 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.689 5.689 14 C 0.584 3.416 15 O -0.576 6.576 16 C -0.017 4.017 17 C -0.013 4.013 18 N -0.341 5.341 19 C -0.023 4.023 20 C 0.117 3.883 21 O -0.319 6.319 22 C 0.014 3.986 23 C -0.143 4.143 24 C -0.047 4.047 25 C 0.189 3.811 26 N -0.487 5.487 27 H 0.031 0.969 28 H 0.040 0.960 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.266 0.734 33 H 0.403 0.597 34 H 0.211 0.789 35 H 0.188 0.812 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.192 0.808 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.367 11.399 24.967 29.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.152 4.152 3 C 0.173 3.827 4 H 0.027 0.973 5 C -0.589 4.589 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.192 1.192 13 N -0.336 5.336 14 C 0.369 3.631 15 O -0.457 6.457 16 C -0.150 4.150 17 C -0.150 4.150 18 N -0.012 5.012 19 C -0.144 4.144 20 C 0.069 3.931 21 O -0.232 6.232 22 C -0.080 4.080 23 C -0.166 4.166 24 C -0.066 4.066 25 C -0.057 4.057 26 N -0.209 5.209 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.238 0.762 34 H 0.228 0.772 35 H 0.205 0.795 36 H 0.140 0.860 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.209 0.791 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -10.329 11.055 24.102 28.457 hybrid contribution 0.462 0.048 -0.425 0.629 sum -9.868 11.103 23.677 27.951 Atomic orbital electron populations 1.21683 0.96557 0.99500 1.00455 1.21708 0.94252 0.98752 1.00520 1.18499 0.94036 0.89324 0.80869 0.97339 1.21507 0.91298 1.43524 1.02590 0.91571 1.25756 1.03342 0.94560 0.94519 1.70109 1.37423 1.43882 1.03835 0.85401 0.79044 0.78981 0.77181 1.19435 1.20955 1.19152 1.46149 1.14851 1.54816 1.17757 1.17266 0.82372 0.78172 0.85255 1.90734 1.52219 1.61958 1.40756 1.20579 0.93738 1.06137 0.94571 1.22702 1.01931 1.04622 0.85760 1.42294 1.13144 1.35164 1.10588 1.20557 0.97183 1.04564 0.92070 1.17992 0.89907 0.94792 0.90414 1.86095 1.39301 1.69657 1.28130 1.23523 1.04034 1.01740 0.78692 1.21726 0.91667 1.00183 1.03046 1.20555 1.02351 0.96736 0.87001 1.21548 0.83442 1.03056 0.97662 1.70751 1.30539 1.19769 0.99813 0.94940 0.94058 0.93091 0.93803 0.92139 0.92484 0.76200 0.77248 0.79526 0.86048 0.90792 0.90829 0.79105 0.80148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.52 71.98 0.61 -5.25 16 2 C -0.11 -5.84 5.49 30.59 0.17 -5.67 16 3 C 0.28 15.15 2.11 44.25 0.09 15.24 16 4 H 0.01 0.56 7.55 -2.39 -0.02 0.54 16 5 C -0.55 -31.05 8.67 25.60 0.22 -30.83 16 6 H 0.07 3.58 7.73 -2.91 -0.02 3.56 16 7 C 0.02 1.05 5.19 84.65 0.44 1.49 16 8 N -0.91 -54.20 12.00 21.45 0.26 -53.94 16 9 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 N -0.69 -33.07 5.02 -449.22 -2.26 -35.33 16 14 C 0.58 26.90 6.40 86.71 0.56 27.46 16 15 O -0.58 -29.26 14.01 -4.02 -0.06 -29.31 16 16 C -0.02 -0.64 6.94 40.82 0.28 -0.36 16 17 C -0.01 -0.40 11.47 83.65 0.96 0.56 16 18 N -0.34 -8.86 2.93 -350.75 -1.03 -9.89 16 19 C -0.02 -0.43 10.86 83.22 0.90 0.47 16 20 C 0.12 1.70 6.63 22.24 0.15 1.84 16 21 O -0.32 -3.66 10.48 -93.88 -0.98 -4.65 16 22 C 0.01 0.04 9.81 113.37 1.11 1.15 16 23 C -0.14 -1.62 9.02 22.37 0.20 -1.42 16 24 C -0.05 -0.82 10.10 22.44 0.23 -0.59 16 25 C 0.19 5.25 7.79 134.20 1.05 6.29 16 26 N -0.49 -17.32 11.01 -183.51 -2.02 -19.34 16 27 H 0.03 1.62 7.87 -2.39 -0.02 1.60 16 28 H 0.04 1.92 5.64 -2.39 -0.01 1.90 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 3.39 6.64 -2.39 -0.02 3.37 16 32 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 33 H 0.40 18.14 8.22 -92.71 -0.76 17.38 16 34 H 0.21 5.59 8.06 -2.91 -0.02 5.56 16 35 H 0.19 2.67 8.06 -2.91 -0.02 2.64 16 36 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.07 0.02 7.67 -2.39 -0.02 0.00 16 38 H 0.07 0.03 7.67 -2.39 -0.02 0.01 16 39 H 0.19 0.51 6.36 -2.91 -0.02 0.49 16 40 H 0.18 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -75.85 337.57 3.23 -72.62 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.32 Total: 23.64 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 6.97 Total: 10.39 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -5.05 Total: -118.50 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.04 Total: -33.96 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -75.85 3.23 -72.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157088232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.236 kcal (2) G-P(sol) polarization free energy of solvation -75.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds