Wall clock time and date at job start Tue Mar 31 2020 08:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47319 * 2 1 4 4 C 1.53005 * 109.47467 * 239.99830 * 2 1 3 5 5 O 1.45203 * 109.47254 * 120.00093 * 2 1 3 6 6 C 1.34224 * 117.00025 * 59.99938 * 5 2 1 7 7 O 1.20822 * 120.00139 * 0.02562 * 6 5 2 8 8 C 1.50701 * 120.00059 * 180.02562 * 6 5 2 9 9 H 1.09000 * 109.47120 * 300.00103 * 8 6 5 10 10 C 1.47206 * 109.47095 * 60.00047 * 8 6 5 11 11 N 4.97818 * 86.74532 * 108.57542 * 2 1 3 12 12 C 1.50699 * 109.47269 * 179.97438 * 8 6 5 13 13 C 1.38175 * 119.56918 * 274.99866 * 12 8 6 14 14 C 1.38833 * 119.33711 * 179.97438 * 13 12 8 15 15 C 1.38364 * 118.50885 * 0.02562 * 14 13 12 16 16 C 1.39180 * 119.08738 * 359.97438 * 15 14 13 17 17 N 1.38843 * 119.70910 * 180.02562 * 16 15 14 18 18 C 1.36921 * 119.99895 * 359.97438 * 17 16 15 19 19 H 1.07999 * 119.99907 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00069 * 180.02562 * 18 17 16 21 21 N 1.31565 * 120.00301 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00068 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47261 * 89.99870 * 22 20 18 24 24 H 1.48497 * 109.47183 * 210.00373 * 22 20 18 25 25 H 1.48512 * 109.46934 * 330.00331 * 22 20 18 26 26 N 1.31870 * 119.56789 * 94.72784 * 12 8 6 27 27 H 1.08992 * 109.47267 * 299.99811 * 1 2 3 28 28 H 1.08996 * 109.47292 * 60.00214 * 1 2 3 29 29 H 1.09008 * 109.46735 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47259 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47210 * 299.99945 * 3 2 1 32 32 H 1.09002 * 109.47315 * 59.99931 * 3 2 1 33 33 H 1.09005 * 109.46709 * 300.00337 * 4 2 1 34 34 H 1.09004 * 109.46736 * 59.99453 * 4 2 1 35 35 H 1.08991 * 109.47489 * 179.97438 * 4 2 1 36 36 H 1.07994 * 120.32924 * 0.02562 * 13 12 8 37 37 H 1.07999 * 120.75014 * 180.02562 * 14 13 12 38 38 H 1.07996 * 120.45107 * 180.02562 * 15 14 13 39 39 H 0.96996 * 120.00600 * 179.97438 * 17 16 15 40 40 H 0.96996 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6534 -1.9684 1.3379 7 8 0.9567 -2.5028 0.5078 8 6 2.1174 -2.7434 2.5441 9 1 3.2069 -2.7722 2.5605 10 6 1.6255 -2.0884 3.7672 11 7 1.2473 -1.5833 4.7112 12 6 1.5782 -4.1490 2.4761 13 6 0.3092 -4.4163 2.9531 14 6 -0.1829 -5.7128 2.8876 15 6 0.6218 -6.6979 2.3432 16 6 1.8900 -6.3574 1.8818 17 7 2.7080 -7.3356 1.3327 18 6 2.2663 -8.6288 1.2473 19 1 1.2814 -8.8878 1.6067 20 6 3.0844 -9.6069 0.6987 21 7 2.6601 -10.8496 0.6171 22 14 4.7877 -9.1587 0.0763 23 1 5.7719 -9.3051 1.1787 24 1 5.1594 -10.0618 -1.0423 25 1 4.7859 -7.7528 -0.4021 26 7 2.3215 -5.1067 1.9572 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 -0.2940 -3.6245 3.3719 37 1 -1.1717 -5.9473 3.2533 38 1 0.2703 -7.7169 2.2764 39 1 3.5925 -7.1030 1.0095 40 1 3.2316 -11.5330 0.2334 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182897.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:06 Heat of formation + Delta-G solvation = -9.255988 kcal Electronic energy + Delta-G solvation = -24317.989568 eV Core-core repulsion = 20712.665753 eV Total energy + Delta-G solvation = -3605.323814 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13795 -39.51092 -37.43112 -36.65023 -35.48481 -34.27746 -32.70558 -32.13444 -30.89408 -27.86436 -27.61286 -27.55625 -24.83607 -23.37809 -21.97297 -21.41099 -20.09479 -18.40816 -18.37269 -17.21913 -16.91169 -16.39590 -15.69836 -15.44521 -15.05159 -14.76562 -14.65761 -14.29786 -13.95281 -13.73231 -13.41114 -13.13474 -12.98336 -12.77997 -12.68738 -12.54875 -12.33260 -12.23946 -12.13382 -12.09104 -11.91712 -11.54581 -11.50966 -11.32440 -11.20520 -10.70940 -10.54034 -10.48919 -10.09753 -10.06950 -9.12180 -8.87949 -8.74596 -7.23956 -6.60278 -3.93168 1.70593 1.96874 2.25257 2.43797 2.59865 2.85518 3.00872 3.02461 3.06473 3.67815 3.92733 4.29512 4.37962 4.50687 4.55598 4.66537 4.70452 4.77130 5.01008 5.13207 5.27251 5.34810 5.49080 5.51744 5.56868 5.63209 5.66470 5.79327 5.93989 6.09017 6.11181 6.14373 6.22405 6.34463 6.43846 6.81552 7.07945 7.31801 7.32857 7.44456 7.69225 7.79215 8.37203 8.57370 9.09140 9.32142 10.49897 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.017181 B = 0.003846 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.328902 B = 7278.890475 C = 8102.679796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.118 3.882 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.349 6.349 6 C 0.481 3.519 7 O -0.463 6.463 8 C 0.076 3.924 9 H 0.162 0.838 10 C 0.226 3.774 11 N -0.404 5.404 12 C 0.188 3.812 13 C -0.268 4.268 14 C -0.030 4.030 15 C -0.231 4.231 16 C 0.379 3.621 17 N -0.560 5.560 18 C -0.305 4.305 19 H 0.122 0.878 20 C 0.045 3.955 21 N -0.868 5.868 22 Si 0.882 3.118 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.264 1.264 26 N -0.560 5.560 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.119 0.881 38 H 0.133 0.867 39 H 0.383 0.617 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.388 18.931 -1.653 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.082 3.918 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.267 6.267 6 C 0.319 3.681 7 O -0.346 6.346 8 C 0.053 3.947 9 H 0.179 0.821 10 C -0.093 4.093 11 N -0.079 5.079 12 C 0.044 3.956 13 C -0.295 4.295 14 C -0.055 4.055 15 C -0.258 4.258 16 C 0.137 3.863 17 N -0.169 5.169 18 C -0.434 4.434 19 H 0.139 0.861 20 C -0.161 4.161 21 N -0.504 5.504 22 Si 0.708 3.292 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.189 1.189 26 N -0.281 5.281 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.137 0.863 38 H 0.151 0.849 39 H 0.218 0.782 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.293 19.116 -1.000 19.145 hybrid contribution 0.508 -0.323 -0.708 0.929 sum 0.215 18.793 -1.708 18.871 Atomic orbital electron populations 1.22506 0.93941 1.05033 1.02725 1.22227 0.94496 0.92195 0.82899 1.21850 1.02318 0.92523 1.03017 1.22512 1.01905 1.03418 0.96369 1.86542 1.69999 1.24683 1.45436 1.22534 0.78087 0.80674 0.86810 1.90664 1.32799 1.69240 1.41946 1.17084 1.04335 0.90072 0.83211 0.82138 1.27746 0.93942 0.93585 0.93998 1.81169 1.07976 1.08536 1.10245 1.18852 0.91039 0.89653 0.96055 1.20882 0.97336 0.97739 1.13557 1.20988 0.98100 0.92062 0.94328 1.21320 0.95118 1.00925 1.08434 1.17851 0.89147 0.85780 0.93567 1.41021 1.14991 1.06194 1.54700 1.19436 1.03966 0.81044 1.38973 0.86073 1.24995 0.98991 0.94950 0.97121 1.69662 1.37511 1.00681 1.42537 0.86575 0.83695 0.79164 0.79788 1.19220 1.19860 1.18878 1.66423 1.37638 0.99955 1.24070 0.92002 0.90939 0.89551 0.91338 0.90307 0.91505 0.89455 0.91027 0.91749 0.87492 0.86266 0.84915 0.78174 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 8.37 37.16 0.31 -1.58 16 2 C 0.12 1.21 1.13 -90.62 -0.10 1.11 16 3 C -0.14 -1.06 8.85 37.16 0.33 -0.73 16 4 C -0.18 -1.91 8.37 37.16 0.31 -1.60 16 5 O -0.35 -4.28 9.79 -39.24 -0.38 -4.66 16 6 C 0.48 6.77 6.53 36.01 0.24 7.00 16 7 O -0.46 -7.57 11.53 -18.75 -0.22 -7.79 16 8 C 0.08 1.06 3.00 -95.71 -0.29 0.77 16 9 H 0.16 1.81 8.14 -51.93 -0.42 1.39 16 10 C 0.23 3.19 13.07 -20.77 -0.27 2.92 16 11 N -0.40 -6.20 18.53 42.13 0.78 -5.42 16 12 C 0.19 3.30 5.01 -82.60 -0.41 2.89 16 13 C -0.27 -4.67 9.17 -39.38 -0.36 -5.03 16 14 C -0.03 -0.53 10.17 -39.32 -0.40 -0.93 16 15 C -0.23 -4.74 9.33 -39.19 -0.37 -5.10 16 16 C 0.38 8.29 7.62 -155.06 -1.18 7.11 16 17 N -0.56 -12.93 5.25 -11.16 -0.06 -12.99 16 18 C -0.31 -7.70 10.03 -15.07 -0.15 -7.85 16 19 H 0.12 3.19 5.88 -52.49 -0.31 2.88 16 20 C 0.05 1.15 5.50 -17.45 -0.10 1.06 16 21 N -0.87 -23.31 13.96 55.49 0.77 -22.53 16 22 Si 0.88 18.82 27.73 -169.99 -4.71 14.11 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.26 -5.41 6.52 56.52 0.37 -5.04 16 26 N -0.56 -11.25 10.31 -8.66 -0.09 -11.34 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.09 5.89 -51.92 -0.31 0.78 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 1.14 5.89 -51.93 -0.31 0.83 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.11 1.71 7.19 -52.49 -0.38 1.34 16 37 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.13 2.77 5.94 -52.49 -0.31 2.46 16 39 H 0.38 8.49 5.88 -40.82 -0.24 8.25 16 40 H 0.28 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 342.16 15.07 5.16 5.16 Total: -1.00 -28.28 342.16 -6.02 -34.30 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -4.82 Total: 11.12 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.44 Total: 0.04 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 1.41 Total: -52.27 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.60 Total: -12.45 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.71 Total: 14.11 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.28 -6.02 -34.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182897.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.043 kcal (2) G-P(sol) polarization free energy of solvation -28.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds