Wall clock time and date at job start Tue Mar 31 2020 08:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47319 * 2 1 4 4 C 1.53005 * 109.47467 * 239.99830 * 2 1 3 5 5 O 1.45203 * 109.47254 * 120.00093 * 2 1 3 6 6 C 1.34224 * 117.00025 * 59.99938 * 5 2 1 7 7 O 1.20822 * 120.00139 * 0.02562 * 6 5 2 8 8 C 1.50701 * 120.00059 * 180.02562 * 6 5 2 9 9 H 1.09000 * 109.47120 * 300.00103 * 8 6 5 10 10 C 1.47206 * 109.47095 * 60.00047 * 8 6 5 11 11 N 4.97818 * 86.74532 * 108.57542 * 2 1 3 12 12 C 1.50699 * 109.47269 * 179.97438 * 8 6 5 13 13 C 1.38175 * 119.56918 * 274.99866 * 12 8 6 14 14 C 1.38833 * 119.33711 * 179.97438 * 13 12 8 15 15 C 1.38364 * 118.50885 * 0.02562 * 14 13 12 16 16 C 1.39180 * 119.08738 * 359.97438 * 15 14 13 17 17 N 1.38843 * 119.70910 * 180.02562 * 16 15 14 18 18 C 1.36921 * 119.99895 * 359.97438 * 17 16 15 19 19 H 1.07999 * 119.99907 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00069 * 180.02562 * 18 17 16 21 21 N 1.31565 * 120.00301 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00068 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47261 * 89.99870 * 22 20 18 24 24 H 1.48497 * 109.47183 * 210.00373 * 22 20 18 25 25 H 1.48512 * 109.46934 * 330.00331 * 22 20 18 26 26 N 1.31870 * 119.56789 * 94.72784 * 12 8 6 27 27 H 1.08992 * 109.47267 * 299.99811 * 1 2 3 28 28 H 1.08996 * 109.47292 * 60.00214 * 1 2 3 29 29 H 1.09008 * 109.46735 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47259 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47210 * 299.99945 * 3 2 1 32 32 H 1.09002 * 109.47315 * 59.99931 * 3 2 1 33 33 H 1.09005 * 109.46709 * 300.00337 * 4 2 1 34 34 H 1.09004 * 109.46736 * 59.99453 * 4 2 1 35 35 H 1.08991 * 109.47489 * 179.97438 * 4 2 1 36 36 H 1.07994 * 120.32924 * 0.02562 * 13 12 8 37 37 H 1.07999 * 120.75014 * 180.02562 * 14 13 12 38 38 H 1.07996 * 120.45107 * 180.02562 * 15 14 13 39 39 H 0.96996 * 120.00600 * 179.97438 * 17 16 15 40 40 H 0.96996 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6534 -1.9684 1.3379 7 8 0.9567 -2.5028 0.5078 8 6 2.1174 -2.7434 2.5441 9 1 3.2069 -2.7722 2.5605 10 6 1.6255 -2.0884 3.7672 11 7 1.2473 -1.5833 4.7112 12 6 1.5782 -4.1490 2.4761 13 6 0.3092 -4.4163 2.9531 14 6 -0.1829 -5.7128 2.8876 15 6 0.6218 -6.6979 2.3432 16 6 1.8900 -6.3574 1.8818 17 7 2.7080 -7.3356 1.3327 18 6 2.2663 -8.6288 1.2473 19 1 1.2814 -8.8878 1.6067 20 6 3.0844 -9.6069 0.6987 21 7 2.6601 -10.8496 0.6171 22 14 4.7877 -9.1587 0.0763 23 1 5.7719 -9.3051 1.1787 24 1 5.1594 -10.0618 -1.0423 25 1 4.7859 -7.7528 -0.4021 26 7 2.3215 -5.1067 1.9572 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 -0.2940 -3.6245 3.3719 37 1 -1.1717 -5.9473 3.2533 38 1 0.2703 -7.7169 2.2764 39 1 3.5925 -7.1030 1.0095 40 1 3.2316 -11.5330 0.2334 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182897.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:06 Heat of formation + Delta-G solvation = -24.500557 kcal Electronic energy + Delta-G solvation = -24318.650622 eV Core-core repulsion = 20712.665753 eV Total energy + Delta-G solvation = -3605.984868 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.24347 -41.00401 -38.61261 -37.81336 -37.09675 -35.18175 -34.29933 -33.70832 -32.44368 -29.37414 -28.35848 -28.26942 -26.63337 -24.61113 -23.40904 -22.93012 -21.07630 -20.16780 -19.56387 -18.57830 -18.09055 -17.49293 -17.18348 -16.70069 -16.59899 -16.20139 -15.73711 -15.43846 -15.23403 -15.00882 -14.81314 -14.55283 -14.30625 -14.11622 -13.93408 -13.76712 -13.40414 -13.26568 -13.15651 -13.01825 -12.93462 -12.86338 -12.79863 -12.44243 -12.36750 -12.24371 -12.06371 -11.89151 -11.41900 -11.12837 -10.82653 -10.53634 -10.33917 -8.93023 -8.47034 -5.86228 0.27482 0.67860 0.85036 1.26087 1.31657 1.35726 1.38336 1.40223 1.76489 2.17977 2.44843 2.76960 2.84273 3.24007 3.31837 3.60288 3.76015 3.80029 3.90563 3.96472 4.16178 4.46214 4.49079 4.58377 4.63269 4.66446 4.79067 4.80548 4.86435 4.90832 4.91960 5.15206 5.23954 5.28277 5.31001 5.43528 5.45599 5.59879 5.75370 6.00516 6.19239 6.57558 6.62680 6.85673 7.28438 7.58684 8.66985 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.017181 B = 0.003846 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.328902 B = 7278.890475 C = 8102.679796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.107 3.893 3 C -0.135 4.135 4 C -0.183 4.183 5 O -0.345 6.345 6 C 0.486 3.514 7 O -0.489 6.489 8 C 0.080 3.920 9 H 0.192 0.808 10 C 0.242 3.758 11 N -0.419 5.419 12 C 0.184 3.816 13 C -0.257 4.257 14 C -0.021 4.021 15 C -0.253 4.253 16 C 0.372 3.628 17 N -0.579 5.579 18 C -0.310 4.310 19 H 0.095 0.905 20 C -0.006 4.006 21 N -0.921 5.921 22 Si 0.945 3.055 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.252 1.252 26 N -0.563 5.563 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.129 0.871 37 H 0.153 0.847 38 H 0.121 0.879 39 H 0.386 0.614 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.071 22.484 -1.553 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.072 3.928 3 C -0.192 4.192 4 C -0.240 4.240 5 O -0.263 6.263 6 C 0.326 3.674 7 O -0.375 6.375 8 C 0.058 3.942 9 H 0.208 0.792 10 C -0.077 4.077 11 N -0.095 5.095 12 C 0.041 3.959 13 C -0.283 4.283 14 C -0.046 4.046 15 C -0.280 4.280 16 C 0.132 3.868 17 N -0.193 5.193 18 C -0.439 4.439 19 H 0.113 0.887 20 C -0.206 4.206 21 N -0.559 5.559 22 Si 0.768 3.232 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.176 1.176 26 N -0.283 5.283 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.147 0.853 37 H 0.171 0.829 38 H 0.139 0.861 39 H 0.221 0.779 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.140 22.757 -0.865 22.774 hybrid contribution 0.141 -1.088 -0.622 1.261 sum 0.281 21.669 -1.487 21.722 Atomic orbital electron populations 1.22488 0.93953 1.03607 1.03975 1.22599 0.94695 0.93487 0.82020 1.21882 1.02694 0.90372 1.04277 1.22488 1.02192 1.01894 0.97420 1.86541 1.69705 1.23550 1.46474 1.22413 0.77524 0.81214 0.86272 1.90684 1.34030 1.69900 1.42852 1.17066 1.06042 0.87843 0.83296 0.79166 1.27568 0.93370 0.93166 0.93554 1.81208 1.08559 1.08983 1.10740 1.19395 0.91082 0.90819 0.94603 1.21291 0.97322 0.98065 1.11582 1.21388 0.99095 0.91506 0.92648 1.21419 0.95484 1.01297 1.09824 1.18190 0.89420 0.86369 0.92854 1.40796 1.15544 1.05610 1.57334 1.19265 1.03198 0.82341 1.39094 0.88698 1.25695 1.02730 0.94652 0.97558 1.69776 1.39214 1.01805 1.45128 0.85597 0.79037 0.79331 0.79241 1.18572 1.19750 1.17592 1.66494 1.38133 0.99574 1.24133 0.91725 0.88777 0.92206 0.90802 0.88058 0.91250 0.92436 0.88913 0.91253 0.85312 0.82920 0.86130 0.77878 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.35 8.37 71.98 0.60 -2.74 16 2 C 0.11 1.94 1.13 -10.79 -0.01 1.93 16 3 C -0.14 -1.57 8.85 71.98 0.64 -0.93 16 4 C -0.18 -3.40 8.37 71.98 0.60 -2.80 16 5 O -0.35 -7.62 9.79 -51.36 -0.50 -8.12 16 6 C 0.49 12.69 6.53 71.24 0.47 13.15 16 7 O -0.49 -15.40 11.53 21.98 0.25 -15.15 16 8 C 0.08 2.02 3.00 -14.09 -0.04 1.98 16 9 H 0.19 3.67 8.14 -2.39 -0.02 3.65 16 10 C 0.24 6.14 13.07 89.45 1.17 7.31 16 11 N -0.42 -11.74 18.53 20.00 0.37 -11.37 16 12 C 0.18 6.08 5.01 42.54 0.21 6.29 16 13 C -0.26 -8.30 9.17 22.40 0.21 -8.10 16 14 C -0.02 -0.72 10.17 22.44 0.23 -0.49 16 15 C -0.25 -10.45 9.33 22.53 0.21 -10.24 16 16 C 0.37 16.31 7.62 133.09 1.01 17.32 16 17 N -0.58 -27.22 5.25 -189.21 -0.99 -28.22 16 18 C -0.31 -16.29 10.03 84.04 0.84 -15.45 16 19 H 0.10 5.34 5.88 -2.91 -0.02 5.32 16 20 C -0.01 -0.30 5.50 84.87 0.47 0.17 16 21 N -0.92 -51.67 13.96 21.65 0.30 -51.37 16 22 Si 0.95 39.50 27.73 68.60 1.90 41.41 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.25 -9.85 6.52 99.48 0.65 -9.20 16 26 N -0.56 -21.93 10.31 -181.30 -1.87 -23.80 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.44 5.89 -2.38 -0.01 1.42 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 1.45 5.89 -2.38 -0.01 1.43 16 34 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.13 3.67 7.19 -2.91 -0.02 3.65 16 37 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 38 H 0.12 5.26 5.94 -2.91 -0.02 5.24 16 39 H 0.39 17.11 5.88 -92.71 -0.54 16.57 16 40 H 0.28 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -62.98 342.16 6.55 -56.43 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.48 Total: 32.78 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 6.60 Total: 7.40 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -2.19 Total: -114.75 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.25 Total: -23.27 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 1.90 Total: 41.41 kcal Total: -62.98 6.55 -56.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182897.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.929 kcal (2) G-P(sol) polarization free energy of solvation -62.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds