Wall clock time and date at job start Tue Mar 31 2020 08:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47223 * 96.88351 * 3 2 1 5 5 C 1.35426 * 117.00519 * 179.97438 * 4 3 2 6 6 N 1.32243 * 119.79609 * 0.02562 * 5 4 3 7 7 C 1.31872 * 121.79859 * 180.02562 * 6 5 4 8 8 C 1.38360 * 121.18952 * 359.97438 * 7 6 5 9 9 C 1.38328 * 119.45481 * 0.25624 * 8 7 6 10 10 C 1.39993 * 118.34897 * 359.50597 * 9 8 7 11 11 C 1.47527 * 120.59455 * 180.22249 * 10 9 8 12 12 O 1.21597 * 119.99974 * 180.27330 * 11 10 9 13 13 N 1.34775 * 120.00460 * 0.27321 * 11 10 9 14 14 C 1.46495 * 120.00317 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47605 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47625 * 179.97438 * 15 14 13 17 17 N 1.46504 * 109.47187 * 179.97438 * 16 15 14 18 18 C 1.36933 * 119.99946 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00075 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99864 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99820 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00318 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47269 * 89.99638 * 22 20 18 24 24 H 1.48501 * 109.47381 * 209.99988 * 22 20 18 25 25 H 1.48498 * 109.46968 * 329.99892 * 22 20 18 26 26 H 4.38449 * 5.44522 * 180.02562 * 4 1 2 27 27 H 1.08993 * 109.47252 * 336.88724 * 3 2 1 28 28 H 1.08997 * 109.47475 * 216.88173 * 3 2 1 29 29 H 1.08006 * 119.40379 * 180.02562 * 7 6 5 30 30 H 1.08002 * 120.27035 * 179.97438 * 8 7 6 31 31 H 1.08001 * 120.82512 * 179.74837 * 9 8 7 32 32 H 0.96996 * 119.99954 * 0.02562 * 13 11 10 33 33 H 1.09009 * 109.46910 * 299.99975 * 14 13 11 34 34 H 1.09004 * 109.47780 * 59.99444 * 14 13 11 35 35 H 1.09009 * 109.46830 * 299.99857 * 15 14 13 36 36 H 1.09004 * 109.47141 * 59.98887 * 15 14 13 37 37 H 1.09003 * 109.46824 * 299.99471 * 16 15 14 38 38 H 1.08998 * 109.47007 * 59.99493 * 16 15 14 39 39 H 0.97001 * 119.99953 * 359.97438 * 17 16 15 40 40 H 0.97005 * 119.99967 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1222 0.1623 -1.3376 5 6 4.4648 0.1848 -1.5138 6 7 5.2668 0.0591 -0.4698 7 6 6.5793 0.0759 -0.5958 8 6 7.1784 0.2262 -1.8339 9 6 6.3872 0.3668 -2.9599 10 6 4.9964 0.3407 -2.8024 11 6 4.1058 0.4812 -3.9702 12 8 2.8992 0.4620 -3.8204 13 7 4.6294 0.6308 -5.2030 14 6 3.7450 0.7708 -6.3624 15 6 4.5870 0.9242 -7.6307 16 6 3.6634 1.0698 -8.8417 17 7 4.4697 1.2173 -10.0559 18 6 3.8564 1.3643 -11.2714 19 1 2.7783 1.3711 -11.3350 20 6 4.6204 1.5046 -12.4218 21 7 4.0309 1.6453 -13.5902 22 14 6.4851 1.4936 -12.3118 23 1 6.9810 0.1008 -12.4509 24 1 7.0501 2.3313 -13.4001 25 1 6.9066 2.0401 -10.9969 26 1 -1.0501 0.0002 0.0000 27 1 3.0097 -0.9443 0.4034 28 1 3.0090 0.8228 0.6167 29 1 7.1979 -0.0304 0.2832 30 1 8.2549 0.2384 -1.9200 31 1 6.8314 0.4896 -3.9366 32 1 5.5918 0.6457 -5.3226 33 1 3.1164 -0.1156 -6.4491 34 1 3.1155 1.6515 -6.2351 35 1 5.2159 1.8104 -7.5443 36 1 5.2163 0.0433 -7.7578 37 1 3.0349 0.1834 -8.9279 38 1 3.0339 1.9506 -8.7147 39 1 5.4380 1.2116 -9.9988 40 1 4.5648 1.7430 -14.3942 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171543645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:45 Heat of formation + Delta-G solvation = 38.658162 kcal Electronic energy + Delta-G solvation = -22877.530086 eV Core-core repulsion = 19274.283985 eV Total energy + Delta-G solvation = -3603.246101 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.30908 -39.32758 -38.45011 -36.16158 -34.53668 -33.75140 -33.25320 -31.90251 -31.11908 -29.93921 -27.83460 -25.94754 -24.56923 -23.43886 -22.23273 -21.35290 -20.71161 -19.08359 -18.85713 -17.95863 -17.35158 -17.22515 -16.68161 -15.81257 -15.68703 -15.50510 -14.87023 -14.73250 -14.56881 -14.36326 -13.88322 -13.73346 -13.35265 -13.29772 -12.82050 -12.66253 -12.51921 -12.17208 -12.01973 -11.20421 -11.05628 -11.05321 -10.84841 -10.72354 -10.50503 -10.42805 -10.41531 -10.17652 -9.82879 -9.60274 -9.17410 -8.92335 -8.90798 -7.25494 -5.77666 -3.13868 0.25552 0.76541 1.88043 2.46846 2.67640 2.95022 3.15174 3.35010 3.37229 3.43362 3.45564 3.78707 4.00913 4.26892 4.35687 4.52903 4.57458 4.72115 4.88704 4.95342 4.97683 5.03300 5.20002 5.32837 5.49301 5.52862 5.53056 5.56168 5.78577 5.83635 5.91829 5.95923 6.13199 6.36024 6.67984 6.71054 6.79296 7.21869 7.23558 7.40053 7.98510 8.12271 8.41112 9.19765 9.91766 10.11255 11.40707 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.020366 B = 0.002432 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.502862 B =11512.709279 C =12856.160022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.202 4.202 3 C 0.180 3.820 4 O -0.264 6.264 5 C 0.374 3.626 6 N -0.547 5.547 7 C 0.166 3.834 8 C -0.218 4.218 9 C -0.008 4.008 10 C -0.205 4.205 11 C 0.559 3.441 12 O -0.513 6.513 13 N -0.726 5.726 14 C 0.124 3.876 15 C -0.142 4.142 16 C 0.160 3.840 17 N -0.757 5.757 18 C -0.245 4.245 19 H 0.091 0.909 20 C 0.002 3.998 21 N -0.934 5.934 22 Si 0.887 3.113 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 H 0.225 0.775 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.166 0.834 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.396 0.604 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.031 0.969 38 H 0.030 0.970 39 H 0.360 0.640 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.067 -3.864 32.049 32.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.202 4.202 3 C 0.106 3.894 4 O -0.168 6.168 5 C 0.194 3.806 6 N -0.271 5.271 7 C 0.009 3.991 8 C -0.239 4.239 9 C -0.034 4.034 10 C -0.211 4.211 11 C 0.345 3.655 12 O -0.389 6.389 13 N -0.379 5.379 14 C 0.001 3.999 15 C -0.180 4.180 16 C 0.032 3.968 17 N -0.403 5.403 18 C -0.375 4.375 19 H 0.109 0.891 20 C -0.193 4.193 21 N -0.582 5.582 22 Si 0.717 3.283 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.241 0.759 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.184 0.816 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.231 0.769 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.193 0.807 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.343 -3.929 32.591 33.113 hybrid contribution 2.192 0.106 -0.768 2.325 sum 6.535 -3.822 31.823 32.711 Atomic orbital electron populations 1.25015 0.95860 1.00179 0.96211 1.22262 0.93573 1.01276 1.03102 1.19141 0.84503 1.03353 0.82453 1.86577 1.15932 1.84914 1.29393 1.19746 0.84158 0.88068 0.88593 1.67491 1.06798 1.20798 1.32038 1.22684 0.89037 0.89673 0.97673 1.21963 1.01903 1.06908 0.93087 1.21695 0.91085 0.90494 1.00086 1.20074 0.94308 1.14023 0.92711 1.17756 0.87817 0.77511 0.82466 1.90870 1.14099 1.48694 1.85193 1.45926 1.10469 1.74846 1.06624 1.21355 0.92699 1.02639 0.83224 1.22001 0.99413 1.02438 0.94155 1.20498 0.92922 0.98936 0.84397 1.42686 1.04160 1.90028 1.03397 1.19074 0.93541 1.42162 0.82719 0.89133 1.24698 0.97457 1.01961 0.95207 1.69709 1.34280 1.56667 0.97525 0.86506 0.87218 0.77663 0.76868 1.21081 1.21708 1.20401 0.75853 0.89062 0.89060 0.81645 0.83645 0.83572 0.76884 0.90990 0.90994 0.91332 0.91319 0.95101 0.95167 0.80708 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 19.25 29.55 0.57 -0.88 16 2 C -0.20 -2.22 13.73 -37.13 -0.51 -2.73 16 3 C 0.18 1.82 5.78 34.37 0.20 2.02 16 4 O -0.26 -3.52 8.17 -39.74 -0.32 -3.85 16 5 C 0.37 4.35 7.51 -16.61 -0.12 4.23 16 6 N -0.55 -5.08 9.21 -12.98 -0.12 -5.20 16 7 C 0.17 1.02 11.17 -17.49 -0.20 0.83 16 8 C -0.22 -1.17 10.09 -39.50 -0.40 -1.57 16 9 C -0.01 -0.05 9.64 -38.89 -0.37 -0.43 16 10 C -0.20 -2.24 5.90 -104.69 -0.62 -2.85 16 11 C 0.56 7.53 7.77 -12.47 -0.10 7.43 16 12 O -0.51 -9.03 15.19 -16.49 -0.25 -9.28 16 13 N -0.73 -8.17 5.51 -61.35 -0.34 -8.50 16 14 C 0.12 1.62 5.67 -4.05 -0.02 1.60 16 15 C -0.14 -1.98 5.44 -26.73 -0.15 -2.12 16 16 C 0.16 3.03 6.26 -4.04 -0.03 3.00 16 17 N -0.76 -17.96 5.41 -59.91 -0.32 -18.28 16 18 C -0.25 -7.01 10.47 -15.06 -0.16 -7.17 16 19 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 20 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 21 N -0.93 -29.51 13.97 55.49 0.78 -28.74 16 22 Si 0.89 21.93 27.73 -169.99 -4.71 17.22 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 26 H 0.22 1.19 7.80 -54.09 -0.42 0.77 16 27 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 28 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 29 H 0.17 0.44 8.06 -52.48 -0.42 0.02 16 30 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 31 H 0.15 0.63 6.52 -52.49 -0.34 0.29 16 32 H 0.40 3.21 6.57 -40.82 -0.27 2.94 16 33 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.36 8.19 5.53 -40.82 -0.23 7.96 16 40 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -37.48 354.08 -7.03 -44.51 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.07 Total: 5.45 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -2.00 Total: 1.34 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.01 Total: -60.73 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.58 Total: -13.13 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.48 -7.03 -44.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171543645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.165 kcal (2) G-P(sol) polarization free energy of solvation -37.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds