Wall clock time and date at job start Tue Mar 31 2020 08:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46752 * 2 1 4 4 C 1.52999 * 109.47292 * 240.00108 * 2 1 3 5 5 C 1.52999 * 109.46807 * 174.99693 * 4 2 1 6 6 C 1.50706 * 109.46712 * 180.02562 * 5 4 2 7 7 H 1.07994 * 119.99989 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99887 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00208 * 180.02562 * 8 6 5 10 10 Si 1.86807 * 119.99745 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46753 * 90.00188 * 10 8 6 12 12 H 1.48493 * 109.46902 * 210.00139 * 10 8 6 13 13 H 1.48495 * 109.47037 * 330.00215 * 10 8 6 14 14 N 1.46899 * 109.46881 * 120.00068 * 2 1 3 15 15 C 1.46902 * 111.00197 * 274.99910 * 14 2 1 16 16 C 1.50700 * 109.47317 * 183.42801 * 15 14 2 17 17 C 1.38612 * 120.80179 * 101.20121 * 16 15 14 18 18 N 1.32314 * 119.10750 * 179.71832 * 17 16 15 19 19 C 1.31809 * 120.81271 * 0.56505 * 18 17 16 20 20 N 1.31783 * 121.75688 * 359.70743 * 19 18 17 21 21 C 1.32348 * 120.81592 * 359.97438 * 20 19 18 22 22 C 1.50704 * 120.44750 * 180.02562 * 21 20 19 23 23 F 1.39895 * 109.47453 * 240.51894 * 22 21 20 24 24 F 1.39908 * 109.46828 * 0.51647 * 22 21 20 25 25 F 1.39899 * 109.47012 * 120.51498 * 22 21 20 26 26 H 1.09008 * 109.46830 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47597 * 299.99550 * 1 2 3 28 28 H 1.09000 * 109.46829 * 60.00037 * 1 2 3 29 29 H 1.08995 * 109.47020 * 295.00164 * 4 2 1 30 30 H 1.09001 * 109.47112 * 54.99977 * 4 2 1 31 31 H 1.08995 * 109.47715 * 300.00045 * 5 4 2 32 32 H 1.08993 * 109.47097 * 60.00576 * 5 4 2 33 33 H 0.96993 * 120.00121 * 180.02562 * 9 8 6 34 34 H 1.00903 * 110.99914 * 151.05200 * 14 2 1 35 35 H 1.09002 * 109.47061 * 303.43118 * 15 14 2 36 36 H 1.09011 * 109.46771 * 63.42598 * 15 14 2 37 37 H 1.08007 * 120.44884 * 359.97438 * 17 16 15 38 38 H 1.08007 * 119.12312 * 179.72517 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.0672 -1.3230 -2.5445 7 1 3.3687 -1.8028 -3.2139 8 6 5.4186 -1.3599 -2.8158 9 7 5.8570 -1.9789 -3.8901 10 14 6.6267 -0.5293 -1.6580 11 1 7.0614 -1.4970 -0.6188 12 1 7.8088 -0.0640 -2.4268 13 1 5.9699 0.6332 -1.0081 14 7 2.0196 -0.6925 1.1994 15 6 2.0825 0.2225 2.3469 16 6 2.6668 -0.4993 3.5337 17 6 3.9920 -0.3139 3.8954 18 7 4.4688 -0.9603 4.9468 19 6 3.7035 -1.7800 5.6395 20 7 2.4411 -1.9851 5.3219 21 6 1.8936 -1.3685 4.2867 22 6 0.4489 -1.6088 3.9312 23 9 0.3685 -2.1402 2.6397 24 9 -0.1117 -2.5107 4.8422 25 9 -0.2513 -0.3987 3.9821 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.7517 -1.7714 -1.2056 30 1 1.6055 -0.2617 -2.1370 31 1 3.8533 0.4371 -1.3572 32 1 3.9995 -1.0727 -0.4260 33 1 6.8076 -2.0051 -4.0807 34 1 2.9174 -1.1205 1.0288 35 1 2.7107 1.0773 2.0961 36 1 1.0780 0.5690 2.5907 37 1 4.6258 0.3526 3.3291 38 1 4.1221 -2.2971 6.4903 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:59 Heat of formation + Delta-G solvation = -104.057868 kcal Electronic energy + Delta-G solvation = -25561.958699 eV Core-core repulsion = 21410.667227 eV Total energy + Delta-G solvation = -4151.291473 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.125 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.23037 -47.80061 -47.57120 -41.58344 -37.64163 -34.61496 -34.36794 -32.86591 -30.94107 -29.52617 -27.67307 -26.26656 -25.16658 -23.56039 -22.64750 -21.17685 -19.77423 -19.16196 -19.04818 -18.56466 -17.51953 -16.93487 -16.03053 -15.84084 -15.65681 -15.05041 -14.62065 -14.53473 -14.46391 -14.19411 -14.15143 -14.02550 -13.77804 -13.69926 -13.30167 -12.88883 -12.80153 -12.53091 -12.52847 -11.99787 -11.75631 -11.51851 -11.38893 -11.21246 -10.99628 -10.65164 -10.09597 -9.98563 -9.85271 -9.78746 -9.51719 -9.25101 -8.60908 -8.33815 -6.09843 -4.08039 0.16982 0.45263 2.20804 3.12829 3.22793 3.29942 3.30263 3.31747 3.56280 3.70721 4.02060 4.10287 4.26813 4.37474 4.38034 4.57031 4.70631 5.06318 5.22338 5.26695 5.36435 5.47148 5.56442 5.71964 5.78043 6.02296 6.16821 6.26715 6.31968 6.39464 6.64655 6.75140 7.07742 7.18863 7.38133 7.47820 7.49803 7.72910 8.48571 8.96002 9.52159 11.03810 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.004748 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.138035 B = 5895.677898 C = 7016.641377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.083 3.917 3 H 0.042 0.958 4 C -0.106 4.106 5 C -0.014 4.014 6 C -0.519 4.519 7 H 0.072 0.928 8 C 0.067 3.933 9 N -0.902 5.902 10 Si 0.879 3.121 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.268 1.268 14 N -0.677 5.677 15 C 0.084 3.916 16 C -0.135 4.135 17 C 0.164 3.836 18 N -0.496 5.496 19 C 0.297 3.703 20 N -0.483 5.483 21 C 0.106 3.894 22 C 0.522 3.478 23 F -0.137 7.137 24 F -0.167 7.167 25 F -0.172 7.172 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.013 0.987 32 H 0.006 0.994 33 H 0.263 0.737 34 H 0.351 0.649 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.181 0.819 38 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.844 4.770 19.187 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 H 0.060 0.940 4 C -0.144 4.144 5 C -0.051 4.051 6 C -0.557 4.557 7 H 0.091 0.909 8 C -0.135 4.135 9 N -0.541 5.541 10 Si 0.706 3.294 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.192 1.192 14 N -0.311 5.311 15 C -0.046 4.046 16 C -0.140 4.140 17 C -0.004 4.004 18 N -0.208 5.208 19 C 0.009 3.991 20 N -0.196 5.196 21 C -0.044 4.044 22 C 0.467 3.533 23 F -0.118 7.118 24 F -0.148 7.148 25 F -0.153 7.153 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.031 0.969 32 H 0.025 0.975 33 H 0.073 0.927 34 H 0.173 0.827 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.198 0.802 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -8.949 3.980 20.026 22.293 hybrid contribution 1.131 1.225 -0.392 1.713 sum -7.818 5.205 19.634 21.765 Atomic orbital electron populations 1.21788 0.95071 1.02223 1.00418 1.21690 0.95148 0.95985 0.89767 0.93991 1.21668 0.97975 1.00280 0.94479 1.19604 0.91947 0.96504 0.97082 1.21116 0.92920 1.34328 1.07377 0.90950 1.25047 0.98414 0.94929 0.95074 1.69905 1.14633 1.43333 1.26206 0.86804 0.80956 0.80327 0.81307 1.20308 1.21328 1.19235 1.60749 1.34569 1.31674 1.04142 1.21112 1.01545 0.93785 0.88130 1.21501 0.96138 0.97856 0.98498 1.23415 0.91698 0.94022 0.91289 1.68478 1.38828 1.07113 1.06357 1.25113 0.84742 0.91744 0.97504 1.68046 1.14686 1.22235 1.14585 1.21368 0.94712 0.94842 0.93429 1.17693 0.84829 0.74700 0.76100 1.93407 1.96317 1.85844 1.36249 1.93231 1.86555 1.67873 1.67114 1.93189 1.80588 1.45323 1.96219 0.91961 0.93707 0.92664 0.91687 0.91795 0.96918 0.97549 0.92701 0.82696 0.92612 0.88777 0.80193 0.77485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.42 37.16 0.35 -1.42 16 2 C 0.08 1.22 2.65 -67.71 -0.18 1.04 16 3 H 0.04 0.60 7.75 -51.93 -0.40 0.20 16 4 C -0.11 -1.96 4.74 -26.73 -0.13 -2.09 16 5 C -0.01 -0.31 3.87 -27.88 -0.11 -0.42 16 6 C -0.52 -14.41 9.66 -34.43 -0.33 -14.74 16 7 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 8 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 9 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 10 Si 0.88 21.05 27.47 -169.99 -4.67 16.39 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 14 N -0.68 -9.46 4.69 -107.98 -0.51 -9.96 16 15 C 0.08 0.96 4.94 -4.97 -0.02 0.93 16 16 C -0.14 -1.54 5.36 -104.36 -0.56 -2.10 16 17 C 0.16 1.74 10.97 -17.21 -0.19 1.55 16 18 N -0.50 -5.51 10.44 -14.58 -0.15 -5.66 16 19 C 0.30 3.02 12.28 -92.15 -1.13 1.89 16 20 N -0.48 -5.83 9.87 -10.80 -0.11 -5.94 16 21 C 0.11 1.31 6.28 -82.24 -0.52 0.79 16 22 C 0.52 6.55 2.89 36.01 0.10 6.66 16 23 F -0.14 -1.90 15.25 2.25 0.03 -1.86 16 24 F -0.17 -2.16 16.89 2.25 0.04 -2.12 16 25 F -0.17 -2.02 15.46 2.25 0.03 -1.98 16 26 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 27 H 0.04 0.53 7.52 -51.93 -0.39 0.14 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 32 H 0.01 0.14 5.85 -51.93 -0.30 -0.16 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.35 5.44 6.42 -39.29 -0.25 5.19 16 35 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 36 H 0.09 1.03 5.53 -51.92 -0.29 0.75 16 37 H 0.18 1.51 8.06 -52.48 -0.42 1.09 16 38 H 0.21 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -31.00 326.42 -6.99 -37.99 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.54 Total: 1.07 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -2.81 Total: -6.10 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.01 Total: -48.30 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.11 Total: -5.96 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.00 -6.99 -37.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.072 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds