Wall clock time and date at job start Tue Mar 31 2020 08:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47085 * 2 1 4 4 C 1.53005 * 109.46718 * 119.99522 * 2 1 3 5 5 C 1.53000 * 109.46648 * 185.00107 * 4 2 1 6 6 C 1.50699 * 109.46980 * 180.02562 * 5 4 2 7 7 H 1.08008 * 119.99770 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00256 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99829 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00128 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47103 * 59.99497 * 10 8 6 12 12 H 1.48496 * 109.47165 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47152 * 300.00019 * 10 8 6 14 14 N 1.46897 * 109.47112 * 239.99634 * 2 1 3 15 15 C 1.46900 * 111.00062 * 85.00494 * 14 2 1 16 16 C 1.50699 * 109.47251 * 179.97438 * 15 14 2 17 17 C 1.38620 * 120.79615 * 259.99344 * 16 15 14 18 18 N 1.32323 * 119.10174 * 179.74313 * 17 16 15 19 19 C 1.31815 * 120.81595 * 0.26374 * 18 17 16 20 20 N 1.31776 * 121.75239 * 0.02562 * 19 18 17 21 21 C 1.32348 * 120.82194 * 359.97438 * 20 19 18 22 22 C 1.50708 * 120.44571 * 179.97438 * 21 20 19 23 23 F 1.39902 * 109.46961 * 5.00043 * 22 21 20 24 24 F 1.39904 * 109.46927 * 124.99653 * 22 21 20 25 25 F 1.39892 * 109.47046 * 244.99402 * 22 21 20 26 26 H 1.09000 * 109.47085 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47400 * 300.00355 * 1 2 3 28 28 H 1.09005 * 109.46999 * 60.00334 * 1 2 3 29 29 H 1.08994 * 109.47127 * 304.99883 * 4 2 1 30 30 H 1.09004 * 109.46747 * 65.00778 * 4 2 1 31 31 H 1.09003 * 109.47392 * 299.99781 * 5 4 2 32 32 H 1.08996 * 109.47152 * 60.00197 * 5 4 2 33 33 H 0.96998 * 120.00334 * 179.97438 * 9 8 6 34 34 H 1.00905 * 110.99909 * 208.95144 * 14 2 1 35 35 H 1.09000 * 109.47242 * 59.99437 * 15 14 2 36 36 H 1.09007 * 109.46690 * 299.99980 * 15 14 2 37 37 H 1.08002 * 120.45316 * 0.02921 * 17 16 15 38 38 H 1.07992 * 119.12088 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5648 -0.6132 1.3138 6 6 4.0671 -1.3240 2.5440 7 1 3.3686 -1.8044 3.2132 8 6 5.4184 -1.3603 2.8158 9 7 6.2689 -0.7749 2.0013 10 14 6.0410 -2.2408 4.3411 11 1 5.6484 -3.6717 4.2815 12 1 7.5209 -2.1361 4.4036 13 1 5.4484 -1.6150 5.5505 14 7 2.0197 -0.6926 -1.1994 15 6 2.0826 0.2225 -2.3469 16 6 2.5886 -0.5217 -3.5556 17 6 3.9130 -0.4158 -3.9512 18 7 4.3226 -1.0880 -5.0148 19 6 3.4878 -1.8460 -5.6974 20 7 2.2212 -1.9660 -5.3542 21 6 1.7400 -1.3235 -4.3019 22 6 0.2898 -1.4664 -3.9174 23 9 -0.3213 -2.4134 -4.7463 24 9 0.1996 -1.8852 -2.5855 25 9 -0.3550 -0.2336 -4.0632 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.6053 -0.2616 2.1370 30 1 1.7516 -1.7715 1.2057 31 1 3.9995 -1.0728 0.4261 32 1 3.8531 0.4370 1.3574 33 1 7.2194 -0.8001 2.1926 34 1 2.9174 -1.1205 -1.0286 35 1 2.7589 1.0461 -2.1182 36 1 1.0871 0.6162 -2.5525 37 1 4.6022 0.2032 -3.3961 38 1 3.8513 -2.3823 -6.5614 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:01 Heat of formation + Delta-G solvation = -107.495084 kcal Electronic energy + Delta-G solvation = -25442.181717 eV Core-core repulsion = 21290.741196 eV Total energy + Delta-G solvation = -4151.440521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.125 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.16460 -47.73050 -47.50794 -41.46726 -37.47944 -34.50005 -34.24765 -32.88934 -30.68113 -29.17181 -27.57183 -26.12615 -24.97807 -23.46431 -22.55377 -21.40816 -19.66178 -19.07317 -18.95921 -18.50340 -17.42228 -16.52179 -15.92828 -15.65756 -15.49379 -14.97586 -14.56515 -14.50195 -14.38996 -14.31804 -14.06783 -13.91510 -13.71085 -13.62122 -13.04253 -12.74711 -12.59758 -12.44029 -12.42057 -11.79202 -11.52441 -11.31819 -11.27483 -11.06815 -10.91352 -10.54239 -10.41024 -9.90391 -9.80822 -9.68243 -9.34224 -9.10217 -8.41375 -8.18075 -6.06278 -4.08094 0.28123 0.57204 2.29184 3.23720 3.30311 3.34859 3.37553 3.37595 3.65676 3.82787 4.13448 4.22551 4.34987 4.41865 4.47792 4.71742 4.82006 5.19612 5.30052 5.38632 5.49681 5.58387 5.69479 5.84465 5.90242 6.11506 6.29168 6.40582 6.44936 6.50239 6.83636 6.99678 7.27558 7.52105 7.58981 7.68307 7.72960 7.92605 8.36575 8.98044 9.56556 11.04954 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.017141 B = 0.004082 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.093160 B = 6856.969278 C = 7814.511318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.086 3.914 3 H 0.041 0.959 4 C -0.115 4.115 5 C 0.021 3.979 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.675 5.675 15 C 0.088 3.912 16 C -0.131 4.131 17 C 0.166 3.834 18 N -0.495 5.495 19 C 0.294 3.706 20 N -0.485 5.485 21 C 0.103 3.897 22 C 0.520 3.480 23 F -0.167 7.167 24 F -0.136 7.136 25 F -0.173 7.173 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.261 0.739 34 H 0.355 0.645 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.183 0.817 38 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.627 2.053 -14.819 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 H 0.059 0.941 4 C -0.152 4.152 5 C -0.016 4.016 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.202 1.202 14 N -0.311 5.311 15 C -0.043 4.043 16 C -0.136 4.136 17 C -0.002 4.002 18 N -0.207 5.207 19 C 0.007 3.993 20 N -0.197 5.197 21 C -0.046 4.046 22 C 0.465 3.535 23 F -0.148 7.148 24 F -0.117 7.117 25 F -0.155 7.155 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.177 0.823 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.200 0.800 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.754 1.323 -15.797 18.613 hybrid contribution 0.831 0.423 1.732 1.967 sum -8.923 1.746 -14.065 16.748 Atomic orbital electron populations 1.21801 0.95440 1.02000 1.00209 1.21624 0.94714 0.96077 0.89912 0.94061 1.21837 0.99627 0.99599 0.94184 1.19119 0.88749 0.96829 0.96878 1.21193 0.91946 1.34349 1.08359 0.92709 1.25003 0.97063 0.95545 0.96697 1.69927 1.02448 1.44096 1.37113 0.86665 0.77593 0.80295 0.83509 1.20220 1.21303 1.20239 1.60732 1.34822 1.31530 1.03970 1.21019 1.01608 0.93681 0.87942 1.21499 0.95724 0.98025 0.98329 1.23461 0.92665 0.93093 0.90935 1.68485 1.38624 1.06857 1.06770 1.25081 0.83898 0.92590 0.97750 1.68021 1.17328 1.20199 1.14189 1.21343 0.94431 0.95320 0.93502 1.17744 0.85043 0.74383 0.76355 1.93224 1.84583 1.64871 1.72160 1.93426 1.96274 1.89650 1.32314 1.93199 1.83147 1.43546 1.95596 0.92121 0.92876 0.93847 0.92487 0.92325 0.96845 0.96906 0.92952 0.82333 0.92528 0.89334 0.79972 0.77602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.41 37.16 0.35 -1.53 16 2 C 0.09 1.35 2.65 -67.71 -0.18 1.17 16 3 H 0.04 0.65 7.80 -51.93 -0.40 0.25 16 4 C -0.11 -2.22 4.74 -26.73 -0.13 -2.34 16 5 C 0.02 0.51 4.80 -27.88 -0.13 0.38 16 6 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 7 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 10 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 N -0.68 -10.13 4.59 -107.99 -0.50 -10.63 16 15 C 0.09 1.09 4.80 -4.98 -0.02 1.06 16 16 C -0.13 -1.61 5.39 -104.36 -0.56 -2.17 16 17 C 0.17 1.93 10.97 -17.20 -0.19 1.74 16 18 N -0.50 -5.90 10.44 -14.58 -0.15 -6.06 16 19 C 0.29 3.20 12.29 -92.15 -1.13 2.07 16 20 N -0.48 -6.16 9.88 -10.80 -0.11 -6.27 16 21 C 0.10 1.35 6.29 -82.24 -0.52 0.83 16 22 C 0.52 6.82 2.85 36.01 0.10 6.93 16 23 F -0.17 -2.26 16.90 2.25 0.04 -2.22 16 24 F -0.14 -1.94 14.87 2.25 0.03 -1.90 16 25 F -0.17 -2.14 15.89 2.25 0.04 -2.10 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.01 0.33 6.43 -51.93 -0.33 0.00 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.35 6.00 6.46 -39.29 -0.25 5.75 16 35 H 0.06 0.65 7.96 -51.93 -0.41 0.24 16 36 H 0.09 1.06 5.70 -51.92 -0.30 0.76 16 37 H 0.18 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.21 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 330.16 15.07 4.98 4.98 Total: -1.00 -29.91 330.16 -7.37 -37.28 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.59 Total: 0.82 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -2.82 Total: -4.91 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.02 Total: -48.25 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.11 Total: -6.23 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.91 -7.37 -37.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.213 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds