Wall clock time and date at job start Tue Mar 31 2020 08:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47085 * 2 1 4 4 C 1.53005 * 109.46718 * 119.99522 * 2 1 3 5 5 C 1.53000 * 109.46648 * 185.00107 * 4 2 1 6 6 C 1.50699 * 109.46980 * 180.02562 * 5 4 2 7 7 H 1.08008 * 119.99770 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00256 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99829 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00128 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47103 * 59.99497 * 10 8 6 12 12 H 1.48496 * 109.47165 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47152 * 300.00019 * 10 8 6 14 14 N 1.46897 * 109.47112 * 239.99634 * 2 1 3 15 15 C 1.46900 * 111.00062 * 85.00494 * 14 2 1 16 16 C 1.50699 * 109.47251 * 179.97438 * 15 14 2 17 17 C 1.38620 * 120.79615 * 259.99344 * 16 15 14 18 18 N 1.32323 * 119.10174 * 179.74313 * 17 16 15 19 19 C 1.31815 * 120.81595 * 0.26374 * 18 17 16 20 20 N 1.31776 * 121.75239 * 0.02562 * 19 18 17 21 21 C 1.32348 * 120.82194 * 359.97438 * 20 19 18 22 22 C 1.50708 * 120.44571 * 179.97438 * 21 20 19 23 23 F 1.39902 * 109.46961 * 5.00043 * 22 21 20 24 24 F 1.39904 * 109.46927 * 124.99653 * 22 21 20 25 25 F 1.39892 * 109.47046 * 244.99402 * 22 21 20 26 26 H 1.09000 * 109.47085 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47400 * 300.00355 * 1 2 3 28 28 H 1.09005 * 109.46999 * 60.00334 * 1 2 3 29 29 H 1.08994 * 109.47127 * 304.99883 * 4 2 1 30 30 H 1.09004 * 109.46747 * 65.00778 * 4 2 1 31 31 H 1.09003 * 109.47392 * 299.99781 * 5 4 2 32 32 H 1.08996 * 109.47152 * 60.00197 * 5 4 2 33 33 H 0.96998 * 120.00334 * 179.97438 * 9 8 6 34 34 H 1.00905 * 110.99909 * 208.95144 * 14 2 1 35 35 H 1.09000 * 109.47242 * 59.99437 * 15 14 2 36 36 H 1.09007 * 109.46690 * 299.99980 * 15 14 2 37 37 H 1.08002 * 120.45316 * 0.02921 * 17 16 15 38 38 H 1.07992 * 119.12088 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5648 -0.6132 1.3138 6 6 4.0671 -1.3240 2.5440 7 1 3.3686 -1.8044 3.2132 8 6 5.4184 -1.3603 2.8158 9 7 6.2689 -0.7749 2.0013 10 14 6.0410 -2.2408 4.3411 11 1 5.6484 -3.6717 4.2815 12 1 7.5209 -2.1361 4.4036 13 1 5.4484 -1.6150 5.5505 14 7 2.0197 -0.6926 -1.1994 15 6 2.0826 0.2225 -2.3469 16 6 2.5886 -0.5217 -3.5556 17 6 3.9130 -0.4158 -3.9512 18 7 4.3226 -1.0880 -5.0148 19 6 3.4878 -1.8460 -5.6974 20 7 2.2212 -1.9660 -5.3542 21 6 1.7400 -1.3235 -4.3019 22 6 0.2898 -1.4664 -3.9174 23 9 -0.3213 -2.4134 -4.7463 24 9 0.1996 -1.8852 -2.5855 25 9 -0.3550 -0.2336 -4.0632 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.6053 -0.2616 2.1370 30 1 1.7516 -1.7715 1.2057 31 1 3.9995 -1.0728 0.4261 32 1 3.8531 0.4370 1.3574 33 1 7.2194 -0.8001 2.1926 34 1 2.9174 -1.1205 -1.0286 35 1 2.7589 1.0461 -2.1182 36 1 1.0871 0.6162 -2.5525 37 1 4.6022 0.2032 -3.3961 38 1 3.8513 -2.3823 -6.5614 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:00 Heat of formation + Delta-G solvation = -124.391785 kcal Electronic energy + Delta-G solvation = -25442.914413 eV Core-core repulsion = 21290.741196 eV Total energy + Delta-G solvation = -4152.173217 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.125 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.19889 -48.74974 -48.57320 -42.38437 -38.74586 -35.74954 -35.33307 -34.59754 -32.14086 -30.59148 -28.56928 -27.32063 -26.61213 -24.44514 -23.68246 -23.00280 -21.07999 -20.04119 -19.94404 -19.53641 -18.53593 -18.36981 -16.87126 -16.82166 -16.71951 -16.54062 -16.00894 -15.53731 -15.45153 -15.38734 -15.09758 -14.81327 -14.76840 -14.69643 -14.43765 -14.32736 -14.19506 -13.72891 -13.45041 -13.17042 -13.04903 -12.81642 -12.71517 -12.36115 -12.21312 -12.13621 -11.82637 -11.57549 -11.28267 -10.99695 -10.78109 -10.61811 -10.51741 -9.36570 -8.18951 -6.27804 -0.66610 -0.33496 1.30063 1.40761 1.42099 1.49908 2.31954 2.38647 2.41725 2.70225 2.98826 3.12561 3.15514 3.23701 3.34662 3.49447 3.65497 3.90129 4.11153 4.33366 4.40267 4.51864 4.55480 4.60293 4.82709 5.01621 5.04461 5.06446 5.12090 5.24640 5.47837 5.51108 5.56881 5.73026 5.87232 6.13512 6.28720 6.35102 6.69488 6.88057 7.40888 8.91780 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.017141 B = 0.004082 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.093160 B = 6856.969278 C = 7814.511318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.093 3.907 3 H 0.042 0.958 4 C -0.102 4.102 5 C 0.029 3.971 6 C -0.543 4.543 7 H 0.054 0.946 8 C 0.006 3.994 9 N -0.928 5.928 10 Si 0.955 3.045 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.269 1.269 14 N -0.679 5.679 15 C 0.091 3.909 16 C -0.136 4.136 17 C 0.166 3.834 18 N -0.507 5.507 19 C 0.297 3.703 20 N -0.500 5.500 21 C 0.094 3.906 22 C 0.522 3.478 23 F -0.171 7.171 24 F -0.144 7.144 25 F -0.169 7.169 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.001 0.999 32 H -0.010 1.010 33 H 0.262 0.738 34 H 0.342 0.658 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.198 0.802 38 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.935 2.001 -14.992 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.016 4.016 3 H 0.060 0.940 4 C -0.140 4.140 5 C -0.008 4.008 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.192 4.192 9 N -0.568 5.568 10 Si 0.781 3.219 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.194 1.194 14 N -0.313 5.313 15 C -0.039 4.039 16 C -0.141 4.141 17 C -0.002 4.002 18 N -0.219 5.219 19 C 0.011 3.989 20 N -0.213 5.213 21 C -0.055 4.055 22 C 0.466 3.534 23 F -0.152 7.152 24 F -0.125 7.125 25 F -0.150 7.150 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.019 0.981 32 H 0.009 0.991 33 H 0.071 0.929 34 H 0.162 0.838 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.215 0.785 38 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -10.089 1.275 -15.976 18.938 hybrid contribution 0.942 0.441 1.729 2.018 sum -9.147 1.716 -14.246 17.017 Atomic orbital electron populations 1.21724 0.93472 1.01985 1.01473 1.21512 0.96105 0.95422 0.88608 0.93981 1.21641 0.96279 0.99711 0.96331 1.18993 0.91901 0.94717 0.95238 1.21668 0.92410 1.34547 1.09491 0.92742 1.25832 0.97390 0.96301 0.99701 1.70040 1.02687 1.45285 1.38808 0.85647 0.77054 0.79260 0.79973 1.19588 1.20900 1.19384 1.60759 1.33912 1.32252 1.04336 1.21028 1.02371 0.93448 0.87007 1.21447 0.95949 0.98377 0.98315 1.23757 0.92654 0.92881 0.90869 1.68566 1.38938 1.07324 1.07064 1.25824 0.83187 0.91826 0.98097 1.68078 1.18224 1.20655 1.14374 1.21402 0.94388 0.95722 0.93982 1.17765 0.85311 0.74400 0.75915 1.93212 1.84688 1.65090 1.72213 1.93406 1.96347 1.89789 1.32969 1.93203 1.83108 1.43163 1.95537 0.92750 0.91809 0.92396 0.92394 0.93059 0.98053 0.99138 0.92885 0.83839 0.91475 0.88596 0.78530 0.74149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.41 71.98 0.68 -2.63 16 2 C 0.09 2.83 2.65 44.92 0.12 2.95 16 3 H 0.04 1.29 7.80 -2.39 -0.02 1.27 16 4 C -0.10 -3.92 4.74 30.60 0.15 -3.77 16 5 C 0.03 1.40 4.80 29.85 0.14 1.55 16 6 C -0.54 -29.97 9.11 25.60 0.23 -29.73 16 7 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 8 C 0.01 0.33 5.46 84.66 0.46 0.79 16 9 N -0.93 -54.30 13.29 21.45 0.28 -54.02 16 10 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 14 N -0.68 -20.00 4.59 -495.56 -2.28 -22.27 16 15 C 0.09 2.16 4.80 85.56 0.41 2.57 16 16 C -0.14 -3.21 5.39 -19.69 -0.11 -3.31 16 17 C 0.17 3.68 10.97 84.71 0.93 4.61 16 18 N -0.51 -11.38 10.44 -200.04 -2.09 -13.47 16 19 C 0.30 5.97 12.29 180.88 2.22 8.20 16 20 N -0.50 -12.11 9.88 -188.08 -1.86 -13.97 16 21 C 0.09 2.36 6.29 42.56 0.27 2.63 16 22 C 0.52 13.22 2.85 71.24 0.20 13.43 16 23 F -0.17 -4.49 16.90 44.97 0.76 -3.73 16 24 F -0.14 -4.00 14.87 44.97 0.67 -3.34 16 25 F -0.17 -3.96 15.89 44.97 0.71 -3.24 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.33 7.45 -2.38 -0.02 1.31 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.00 0.06 6.43 -2.39 -0.02 0.05 16 32 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 33 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.34 11.64 6.46 -89.69 -0.58 11.06 16 35 H 0.07 1.46 7.96 -2.39 -0.02 1.44 16 36 H 0.10 2.13 5.70 -2.38 -0.01 2.12 16 37 H 0.20 3.62 8.06 -2.91 -0.02 3.59 16 38 H 0.24 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -63.12 330.16 4.46 -58.66 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.52 Total: 12.52 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 5.71 Total: -2.72 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -5.94 Total: -103.73 kcal Atomic # 9 Polarization: -12.45 SS G_CDS: 2.14 Total: -10.30 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -63.12 4.46 -58.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.729 kcal (2) G-P(sol) polarization free energy of solvation -63.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds