Wall clock time and date at job start Tue Mar 31 2020 07:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47140 * 2 1 4 4 C 1.52991 * 109.47377 * 239.99480 * 2 1 3 5 5 C 1.50700 * 109.46490 * 119.99731 * 2 1 3 6 6 N 1.31033 * 126.46392 * 60.25964 * 5 2 1 7 7 C 1.35027 * 105.59687 * 180.11760 * 6 5 2 8 8 N 1.38911 * 126.39142 * 179.90608 * 7 6 5 9 9 C 1.39868 * 120.00249 * 175.34285 * 8 7 6 10 10 C 1.38753 * 120.10369 * 353.44253 * 9 8 7 11 11 C 1.38193 * 119.99528 * 179.97438 * 10 9 8 12 12 C 1.38349 * 120.20094 * 0.02562 * 11 10 9 13 13 C 1.38174 * 120.21048 * 359.68042 * 12 11 10 14 14 C 1.38726 * 120.00108 * 0.59615 * 13 12 11 15 15 O 1.35789 * 120.09627 * 179.70225 * 14 13 12 16 16 C 1.34798 * 117.00375 * 359.51817 * 15 14 13 17 17 H 1.08000 * 120.00067 * 355.30268 * 16 15 14 18 18 C 1.38626 * 120.00259 * 175.30321 * 16 15 14 19 19 N 1.31579 * 119.99730 * 359.72337 * 18 16 15 20 20 Si 1.86805 * 120.00344 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46894 * 90.00137 * 20 18 16 22 22 H 1.48497 * 109.47100 * 210.00243 * 20 18 16 23 23 H 1.48499 * 109.46874 * 329.99743 * 20 18 16 24 24 N 1.30656 * 107.21872 * 359.63505 * 7 6 5 25 25 O 1.21290 * 110.12293 * 0.23093 * 24 7 6 26 26 H 1.08998 * 109.47584 * 300.00046 * 1 2 3 27 27 H 1.09003 * 109.46899 * 60.00153 * 1 2 3 28 28 H 1.09001 * 109.47333 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46804 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47100 * 299.99724 * 3 2 1 31 31 H 1.09002 * 109.47373 * 59.99720 * 3 2 1 32 32 H 1.09001 * 109.47282 * 300.00513 * 4 2 1 33 33 H 1.09004 * 109.47281 * 60.00548 * 4 2 1 34 34 H 1.09000 * 109.47463 * 180.02562 * 4 2 1 35 35 H 0.97003 * 119.99829 * 355.34200 * 8 7 6 36 36 H 1.07998 * 120.00330 * 359.97438 * 10 9 8 37 37 H 1.08002 * 119.89958 * 179.97438 * 11 10 9 38 38 H 1.07996 * 119.89217 * 179.97438 * 12 11 10 39 39 H 1.07999 * 119.99881 * 180.32598 * 13 12 11 40 40 H 0.97003 * 119.99943 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0322 -0.7104 1.2305 6 7 1.7988 -1.9570 1.5598 7 6 2.4420 -2.1496 2.7313 8 7 2.4776 -3.3266 3.4682 9 6 3.2677 -3.4073 4.6196 10 6 4.1201 -2.3645 4.9532 11 6 4.8993 -2.4463 6.0915 12 6 4.8332 -3.5663 6.9011 13 6 3.9829 -4.6070 6.5801 14 6 3.2011 -4.5364 5.4363 15 8 2.3692 -5.5607 5.1158 16 6 2.3576 -6.6224 5.9462 17 1 3.0457 -6.6654 6.7775 18 6 1.4624 -7.6593 5.7331 19 7 0.6204 -7.6044 4.7235 20 14 1.4468 -9.1311 6.8834 21 1 0.5022 -8.8761 8.0005 22 1 1.0147 -10.3391 6.1357 23 1 2.8111 -9.3479 7.4283 24 7 3.0295 -1.0240 3.0396 25 8 2.8041 -0.1891 2.1891 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7490 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2489 35 1 1.9545 -4.0925 3.1843 36 1 4.1745 -1.4889 4.3233 37 1 5.5625 -1.6339 6.3495 38 1 5.4447 -3.6252 7.7893 39 1 3.9302 -5.4774 7.2173 40 1 -0.0057 -8.3301 4.5741 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212596368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:08 Heat of formation + Delta-G solvation = 59.058728 kcal Electronic energy + Delta-G solvation = -24277.660777 eV Core-core repulsion = 20675.299311 eV Total energy + Delta-G solvation = -3602.361466 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.50536 -41.12544 -38.75150 -38.36112 -37.45779 -35.30420 -34.29614 -32.29467 -30.90426 -29.96485 -28.24443 -28.21480 -27.39541 -25.49341 -24.76470 -23.24891 -22.86403 -20.92423 -19.95277 -19.31160 -19.13252 -18.67731 -17.56725 -17.47024 -16.36406 -16.31047 -15.97726 -15.79597 -15.37450 -15.07238 -15.03410 -14.64757 -14.43155 -14.28947 -13.71163 -13.52104 -13.34027 -13.02356 -12.99798 -12.69408 -12.62025 -12.61198 -12.59547 -12.35764 -12.23103 -12.14272 -11.88250 -11.80552 -11.66889 -11.30065 -10.83575 -10.57787 -9.40906 -8.49772 -8.48217 -6.13756 0.10680 0.48858 0.63994 1.34653 1.40636 1.43799 1.46209 1.51981 1.84545 2.15462 2.81602 2.83210 3.13568 3.28047 3.42743 3.85555 3.86461 3.89403 4.11172 4.24335 4.34178 4.48267 4.64826 4.67962 4.75388 4.76205 4.84387 4.94558 4.96396 4.96930 5.03768 5.04949 5.19802 5.25873 5.33488 5.34340 5.42885 5.50846 5.72236 5.88849 6.01014 6.15970 6.22396 6.96513 7.33049 7.71764 8.74186 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.017938 B = 0.003679 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.550771 B = 7608.881355 C = 8969.426399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.029 3.971 3 C -0.145 4.145 4 C -0.139 4.139 5 C 0.218 3.782 6 N -0.525 5.525 7 C 0.409 3.591 8 N -0.618 5.618 9 C 0.088 3.912 10 C -0.142 4.142 11 C -0.158 4.158 12 C -0.094 4.094 13 C -0.216 4.216 14 C 0.085 3.915 15 O -0.226 6.226 16 C -0.410 4.410 17 H 0.104 0.896 18 C -0.020 4.020 19 N -0.918 5.918 20 Si 1.017 2.983 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.252 1.252 24 N -0.437 5.437 25 O 0.062 5.938 26 H 0.057 0.943 27 H 0.110 0.890 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.425 0.575 36 H 0.161 0.839 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.131 0.869 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.431 16.785 -8.618 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.027 3.973 3 C -0.203 4.203 4 C -0.196 4.196 5 C -0.003 4.003 6 N -0.264 5.264 7 C 0.049 3.951 8 N -0.253 5.253 9 C -0.009 4.009 10 C -0.164 4.164 11 C -0.177 4.177 12 C -0.113 4.113 13 C -0.236 4.236 14 C 0.033 3.967 15 O -0.133 6.133 16 C -0.486 4.486 17 H 0.121 0.879 18 C -0.218 4.218 19 N -0.556 5.556 20 Si 0.837 3.163 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.176 1.176 24 N -0.167 5.167 25 O 0.018 5.982 26 H 0.076 0.924 27 H 0.129 0.871 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.263 0.737 36 H 0.177 0.823 37 H 0.170 0.830 38 H 0.170 0.830 39 H 0.149 0.851 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.461 16.466 -8.258 18.743 hybrid contribution -0.552 -1.557 0.448 1.712 sum 2.909 14.909 -7.810 17.080 Atomic orbital electron populations 1.21955 0.90433 1.02921 1.04414 1.19673 0.97352 0.95823 0.84448 1.21987 1.02196 0.91219 1.04848 1.21947 1.01560 1.00546 0.95581 1.29488 0.89062 0.87545 0.94204 1.71799 1.26511 1.16806 1.11277 1.22182 0.94669 0.88667 0.89546 1.40699 1.49184 1.10624 1.24744 1.17284 0.98878 0.95873 0.88844 1.21631 0.96454 0.98295 1.00008 1.21018 1.01931 0.99626 0.95089 1.21184 0.97562 0.92391 1.00174 1.21179 1.01649 1.02439 0.98316 1.19314 0.94162 0.88606 0.94621 1.83852 1.55736 1.24711 1.49025 1.21794 1.21062 0.95564 1.10221 0.87909 1.26517 0.94318 1.01743 0.99211 1.70178 1.20953 1.34231 1.30256 0.84595 0.79728 0.75173 0.76799 1.19021 1.19784 1.17574 1.74705 1.28523 0.99635 1.13795 1.85223 1.52583 1.35270 1.25090 0.92379 0.87145 0.93103 0.91496 0.87522 0.91642 0.93074 0.87185 0.92220 0.73679 0.82272 0.83001 0.83017 0.85119 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.46 71.98 0.61 -1.49 16 2 C 0.03 0.49 0.99 -52.93 -0.05 0.44 16 3 C -0.15 -1.57 8.06 71.98 0.58 -0.99 16 4 C -0.14 -2.02 8.46 71.98 0.61 -1.41 16 5 C 0.22 6.05 6.59 88.36 0.58 6.63 16 6 N -0.52 -18.90 11.57 -311.29 -3.60 -22.50 16 7 C 0.41 16.73 8.79 260.87 2.29 19.02 16 8 N -0.62 -28.46 5.56 -196.05 -1.09 -29.55 16 9 C 0.09 4.10 6.64 38.29 0.25 4.35 16 10 C -0.14 -5.73 9.13 22.38 0.20 -5.53 16 11 C -0.16 -5.44 10.04 22.29 0.22 -5.21 16 12 C -0.09 -3.32 10.04 22.28 0.22 -3.09 16 13 C -0.22 -9.51 9.16 22.37 0.20 -9.30 16 14 C 0.09 4.34 6.67 22.69 0.15 4.49 16 15 O -0.23 -13.39 9.02 -22.85 -0.21 -13.59 16 16 C -0.41 -23.60 9.48 67.91 0.64 -22.96 16 17 H 0.10 5.41 5.21 -2.91 -0.02 5.39 16 18 C -0.02 -1.14 5.49 84.82 0.47 -0.67 16 19 N -0.92 -55.73 13.67 21.61 0.30 -55.43 16 20 Si 1.02 42.72 29.55 68.60 2.03 44.75 16 21 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 24 N -0.44 -16.25 8.50 -66.56 -0.57 -16.82 16 25 O 0.06 1.89 10.75 74.68 0.80 2.69 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.43 20.92 8.21 -92.71 -0.76 20.16 16 36 H 0.16 6.22 4.63 -6.21 -0.03 6.19 16 37 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 38 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 39 H 0.13 5.68 5.63 -2.91 -0.02 5.66 16 40 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -73.31 339.32 4.96 -68.35 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: 0.31 Total: 37.82 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 6.99 Total: -15.71 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -4.96 Total: -124.31 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.60 Total: -10.90 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -73.31 4.96 -68.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.410 kcal (2) G-P(sol) polarization free energy of solvation -73.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds