Wall clock time and date at job start Tue Mar 31 2020 08:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 O 1.42905 * 109.47264 * 180.02562 * 3 2 1 5 5 C 1.35831 * 117.00049 * 180.02562 * 4 3 2 6 6 C 1.38889 * 119.91432 * 359.72444 * 5 4 3 7 7 C 1.37821 * 120.08829 * 179.76287 * 6 5 4 8 8 C 1.39623 * 119.90745 * 0.51409 * 7 6 5 9 9 C 1.47772 * 120.08355 * 179.76726 * 8 7 6 10 10 N 1.31277 * 126.38725 * 180.02562 * 9 8 7 11 11 N 1.28657 * 109.25366 * 179.97438 * 10 9 8 12 12 C 1.30350 * 109.53712 * 359.97438 * 11 10 9 13 13 C 1.50703 * 126.18143 * 179.97438 * 12 11 10 14 14 H 1.09009 * 109.47018 * 194.97619 * 13 12 11 15 15 N 1.46895 * 109.47167 * 314.97643 * 13 12 11 16 16 C 1.50702 * 109.47247 * 74.97839 * 13 12 11 17 17 H 1.07999 * 119.99857 * 359.97438 * 16 13 12 18 18 C 1.37872 * 119.99942 * 179.97438 * 16 13 12 19 19 N 1.31508 * 120.00266 * 0.02562 * 18 16 13 20 20 Si 1.86809 * 119.99749 * 179.97438 * 18 16 13 21 21 H 1.48493 * 109.46751 * 60.00326 * 20 18 16 22 22 H 1.48496 * 109.46837 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.46844 * 300.00211 * 20 18 16 24 24 O 1.34458 * 107.63409 * 359.75989 * 12 11 10 25 25 C 1.39616 * 119.83057 * 359.73754 * 8 7 6 26 26 C 1.37818 * 119.91109 * 0.02562 * 25 8 7 27 27 H 1.09004 * 109.47298 * 59.99717 * 1 2 3 28 28 H 1.09004 * 109.47552 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 30 30 H 1.09001 * 109.46997 * 240.00426 * 2 1 3 31 31 H 1.08992 * 109.47534 * 120.00480 * 2 1 3 32 32 H 1.09001 * 109.47289 * 60.00050 * 3 2 1 33 33 H 1.09004 * 109.47261 * 300.00306 * 3 2 1 34 34 H 1.08006 * 119.95410 * 359.97438 * 6 5 4 35 35 H 1.07996 * 120.04241 * 180.27456 * 7 6 5 36 36 H 1.00901 * 111.00119 * 60.00270 * 15 13 12 37 37 H 1.00908 * 111.00242 * 183.95445 * 15 13 12 38 38 H 0.96999 * 120.00198 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.04727 * 180.02562 * 25 8 7 40 40 H 1.07999 * 119.96040 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0857 2.6528 -0.0001 6 6 3.3275 3.8165 -0.0049 7 6 3.9494 5.0464 0.0005 8 6 5.3436 5.1215 -0.0001 9 6 6.0145 6.4381 0.0005 10 7 7.3096 6.6522 -0.0005 11 7 7.5301 7.9198 -0.0001 12 6 6.3945 8.5598 0.0005 13 6 6.2167 10.0563 0.0016 14 1 5.1879 10.2997 0.2675 15 7 7.1310 10.6573 0.9817 16 6 6.5229 10.5996 -1.3703 17 1 6.8173 9.9284 -2.1635 18 6 6.4272 11.9535 -1.6127 19 7 6.0692 12.7708 -0.6466 20 14 6.8075 12.6270 -3.3131 21 1 5.8839 12.0189 -4.3042 22 1 6.6321 14.1016 -3.3120 23 1 8.2092 12.2959 -3.6745 24 8 5.4106 7.6434 -0.0048 25 6 6.1022 3.9494 -0.0006 26 6 5.4728 2.7234 -0.0011 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8898 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 2.2490 3.7574 -0.0094 35 1 3.3591 5.9507 0.0012 36 1 8.0917 10.4459 0.7570 37 1 6.9860 11.6537 1.0479 38 1 6.0022 13.7233 -0.8171 39 1 7.1809 4.0034 -0.0007 40 1 6.0589 1.8162 -0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217717845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:35 Heat of formation + Delta-G solvation = 10.207915 kcal Electronic energy + Delta-G solvation = -23184.806932 eV Core-core repulsion = 19580.327136 eV Total energy + Delta-G solvation = -3604.479796 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.34689 -40.36728 -37.88804 -35.42080 -35.11183 -34.37030 -32.05852 -31.30500 -31.10684 -28.61650 -27.00302 -26.33306 -24.10763 -23.63356 -22.97947 -21.75186 -21.17867 -20.62098 -18.49668 -17.25589 -17.02954 -16.65764 -16.25890 -16.15046 -15.89687 -14.99364 -14.54834 -14.54413 -14.33466 -14.06453 -13.65202 -13.13592 -13.03758 -12.83042 -12.80255 -12.66666 -12.33039 -11.82559 -11.73565 -11.65206 -11.58268 -11.28835 -11.12191 -11.04538 -11.01465 -10.97805 -10.47944 -10.27787 -10.03183 -9.38604 -9.22575 -8.84464 -7.93570 -7.48266 -6.33372 -4.49938 0.74312 1.16563 2.19169 2.79679 2.88590 3.13083 3.17600 3.21603 3.27507 3.70761 4.17736 4.33748 4.42730 4.43241 4.60666 4.68939 4.75411 4.91760 4.93813 4.96992 5.10302 5.15319 5.22596 5.38974 5.48640 5.50527 5.59782 5.66549 5.73981 5.83745 5.93155 6.05803 6.21635 6.32767 6.41257 6.45421 6.49413 7.11565 7.15566 7.53882 7.67919 8.35518 8.63068 8.89037 9.06981 9.22183 10.66876 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.025193 B = 0.002528 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.147332 B =11071.163158 C =11527.228900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.055 3.945 4 O -0.314 6.314 5 C 0.142 3.858 6 C -0.209 4.209 7 C -0.048 4.048 8 C -0.039 4.039 9 C 0.163 3.837 10 N -0.277 5.277 11 N -0.301 5.301 12 C 0.235 3.765 13 C 0.300 3.700 14 H 0.069 0.931 15 N -0.843 5.843 16 C -0.551 4.551 17 H 0.061 0.939 18 C 0.072 3.928 19 N -0.889 5.889 20 Si 0.911 3.089 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.273 1.273 24 O -0.227 6.227 25 C -0.034 4.034 26 C -0.152 4.152 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.330 0.670 37 H 0.367 0.633 38 H 0.272 0.728 39 H 0.146 0.854 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.943 -21.053 1.628 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.020 4.020 4 O -0.227 6.227 5 C 0.096 3.904 6 C -0.228 4.228 7 C -0.068 4.068 8 C -0.041 4.041 9 C -0.046 4.046 10 N -0.126 5.126 11 N -0.147 5.147 12 C 0.026 3.974 13 C 0.188 3.812 14 H 0.087 0.913 15 N -0.377 5.377 16 C -0.591 4.591 17 H 0.079 0.921 18 C -0.132 4.132 19 N -0.527 5.527 20 Si 0.738 3.262 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.198 1.198 24 O -0.106 6.106 25 C -0.054 4.054 26 C -0.171 4.171 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.140 0.860 37 H 0.187 0.813 38 H 0.082 0.918 39 H 0.164 0.836 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.001 -21.675 2.224 23.575 hybrid contribution -0.943 1.418 -1.769 2.456 sum -9.944 -20.257 0.455 22.571 Atomic orbital electron populations 1.21698 0.94183 1.02582 1.02343 1.21484 0.96089 0.94760 1.03769 1.22939 0.78301 0.98968 1.01767 1.86036 1.21469 1.26981 1.88241 1.19159 0.92323 0.84048 0.94874 1.21113 1.00264 0.91689 1.09719 1.21082 0.92978 0.98046 0.94701 1.17116 0.92367 0.86263 1.08358 1.25083 0.88812 0.85949 1.04745 1.74565 1.12153 1.09805 1.16052 1.74308 1.23566 0.96867 1.19914 1.29326 0.79906 0.96177 0.92029 1.17588 0.96464 0.74576 0.92553 0.91297 1.59190 1.08095 1.20083 1.50355 1.21512 1.48982 0.93025 0.95566 0.92079 1.24961 0.93644 0.96379 0.98214 1.69704 1.46211 1.04454 1.32353 0.86332 0.79280 0.77633 0.83000 1.19949 1.20839 1.19792 1.84835 1.40104 1.15533 1.70160 1.20986 1.00804 0.89430 0.94166 1.20316 0.91167 0.98380 1.07214 0.92285 0.91697 0.92281 0.90779 0.90776 0.91754 0.91763 0.84833 0.84629 0.86021 0.81340 0.91781 0.83592 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.16 0.37 -0.28 16 2 C -0.12 -0.70 6.30 -26.73 -0.17 -0.87 16 3 C 0.06 0.40 4.74 37.16 0.18 0.57 16 4 O -0.31 -3.18 10.13 -19.21 -0.19 -3.38 16 5 C 0.14 1.60 6.69 -39.10 -0.26 1.33 16 6 C -0.21 -2.30 9.02 -39.49 -0.36 -2.66 16 7 C -0.05 -0.64 9.72 -39.22 -0.38 -1.02 16 8 C -0.04 -0.61 5.87 -104.97 -0.62 -1.22 16 9 C 0.16 3.23 7.99 -13.89 -0.11 3.12 16 10 N -0.28 -6.07 11.91 32.06 0.38 -5.68 16 11 N -0.30 -7.25 12.08 32.58 0.39 -6.86 16 12 C 0.24 5.66 7.24 -12.91 -0.09 5.57 16 13 C 0.30 7.56 3.25 -70.02 -0.23 7.33 16 14 H 0.07 1.80 8.14 -51.92 -0.42 1.38 16 15 N -0.84 -20.22 9.18 -6.65 -0.06 -20.29 16 16 C -0.55 -14.70 8.71 -34.44 -0.30 -15.00 16 17 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 18 C 0.07 1.88 5.38 -17.82 -0.10 1.78 16 19 N -0.89 -23.31 11.54 55.43 0.64 -22.67 16 20 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 O -0.23 -4.98 10.67 3.87 0.04 -4.94 16 25 C -0.03 -0.46 9.69 -39.22 -0.38 -0.84 16 26 C -0.15 -1.72 9.97 -39.49 -0.39 -2.12 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 33 H 0.06 0.42 7.64 -51.93 -0.40 0.02 16 34 H 0.13 1.12 6.28 -52.48 -0.33 0.79 16 35 H 0.14 1.73 7.93 -52.49 -0.42 1.31 16 36 H 0.33 7.85 8.87 -39.29 -0.35 7.50 16 37 H 0.37 9.03 7.08 -39.29 -0.28 8.75 16 38 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 39 H 0.15 1.86 7.86 -52.49 -0.41 1.45 16 40 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 347.13 15.07 5.23 5.23 Total: -1.00 -28.99 347.13 -6.51 -35.50 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.08 Total: 11.92 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.84 Total: -4.30 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 1.35 Total: -55.50 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.15 Total: -8.32 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.99 -6.51 -35.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217717845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.704 kcal (2) G-P(sol) polarization free energy of solvation -28.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds