Wall clock time and date at job start Tue Mar 31 2020 08:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46984 * 2 1 4 4 O 1.42905 * 109.47177 * 119.99655 * 2 1 3 5 5 C 1.35836 * 116.99777 * 155.37186 * 4 2 1 6 6 C 1.38888 * 119.91512 * 5.08969 * 5 4 2 7 7 C 1.37818 * 120.08997 * 179.76624 * 6 5 4 8 8 C 1.39623 * 119.90749 * 0.50331 * 7 6 5 9 9 C 1.47772 * 120.08397 * 179.76895 * 8 7 6 10 10 N 1.31284 * 126.38487 * 180.02562 * 9 8 7 11 11 N 1.28658 * 109.24702 * 179.97438 * 10 9 8 12 12 C 1.30341 * 109.54566 * 359.97438 * 11 10 9 13 13 C 1.50701 * 126.18711 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47238 * 194.97846 * 13 12 11 15 15 N 1.46905 * 109.46962 * 314.97486 * 13 12 11 16 16 C 1.50696 * 109.47460 * 74.97336 * 13 12 11 17 17 H 1.08007 * 119.99594 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00337 * 179.97438 * 16 13 12 19 19 N 1.31507 * 120.00061 * 179.97438 * 18 16 13 20 20 Si 1.86801 * 119.99697 * 0.02562 * 18 16 13 21 21 H 1.48508 * 109.47056 * 89.99799 * 20 18 16 22 22 H 1.48497 * 109.47130 * 209.99530 * 20 18 16 23 23 H 1.48498 * 109.47195 * 329.99687 * 20 18 16 24 24 O 1.34463 * 107.63379 * 359.75750 * 12 11 10 25 25 C 1.39615 * 119.82872 * 359.74716 * 8 7 6 26 26 C 1.37816 * 119.91299 * 0.02562 * 25 8 7 27 27 H 1.08998 * 109.47499 * 299.99851 * 1 2 3 28 28 H 1.09001 * 109.47225 * 60.00448 * 1 2 3 29 29 H 1.09007 * 109.46815 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47499 * 240.00149 * 2 1 3 31 31 H 1.09001 * 109.46774 * 299.99829 * 3 2 1 32 32 H 1.08995 * 109.47286 * 60.00081 * 3 2 1 33 33 H 1.08998 * 109.47423 * 180.02562 * 3 2 1 34 34 H 1.08006 * 119.95414 * 359.97438 * 6 5 4 35 35 H 1.07999 * 120.04719 * 180.27517 * 7 6 5 36 36 H 1.00901 * 110.99553 * 296.04601 * 15 13 12 37 37 H 1.00893 * 110.99962 * 59.99987 * 15 13 12 38 38 H 0.97004 * 120.00120 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.04677 * 180.02562 * 25 8 7 40 40 H 1.08002 * 119.95934 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2492 -1.2177 1.1006 6 6 4.0353 -1.0141 -0.0262 7 6 5.2986 -1.5604 -0.0953 8 6 5.7839 -2.3283 0.9651 9 6 7.1360 -2.9202 0.8930 10 7 7.7127 -3.6590 1.8122 11 7 8.8862 -3.9988 1.4086 12 6 9.1033 -3.4955 0.2261 13 6 10.3565 -3.6600 -0.5945 14 1 10.3614 -2.9269 -1.4012 15 7 11.5327 -3.4541 0.2613 16 6 10.3966 -5.0490 -1.1776 17 1 9.5944 -5.7431 -0.9746 18 6 11.4566 -5.4333 -1.9711 19 7 11.4918 -6.6456 -2.4795 20 14 12.8436 -4.2324 -2.3227 21 1 13.8941 -4.3710 -1.2821 22 1 13.4264 -4.5261 -3.6566 23 1 12.3130 -2.8455 -2.3088 24 8 8.0046 -2.8079 -0.1319 25 6 4.9887 -2.5350 2.0938 26 6 3.7282 -1.9814 2.1572 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 3.6572 -0.4239 -0.8480 35 1 5.9110 -1.3979 -0.9699 36 1 11.5629 -2.5088 0.6129 37 1 11.5511 -4.1219 1.0173 38 1 12.2378 -6.9162 -3.0374 39 1 5.3607 -3.1281 2.9162 40 1 3.1125 -2.1405 3.0302 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217717869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:38 Heat of formation + Delta-G solvation = 21.401567 kcal Electronic energy + Delta-G solvation = -23546.705821 eV Core-core repulsion = 19942.711418 eV Total energy + Delta-G solvation = -3603.994403 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.52952 -40.59379 -38.06412 -35.61407 -35.30493 -33.74638 -32.13505 -31.49468 -31.21384 -28.72160 -27.71364 -26.74296 -24.28488 -24.03398 -22.96973 -21.97651 -20.99722 -20.54284 -18.68826 -17.35898 -17.33793 -16.46673 -16.27254 -15.87412 -15.73276 -15.10620 -14.93087 -14.55849 -14.25591 -14.06747 -13.85979 -13.63948 -13.20265 -12.84054 -12.69728 -12.63358 -12.46454 -12.30764 -12.13942 -11.85935 -11.59757 -11.39112 -11.26400 -10.95644 -10.93962 -10.80719 -10.53558 -10.02930 -9.61676 -9.35145 -9.28839 -8.72379 -8.24256 -7.97412 -6.18756 -4.34080 0.63777 1.09430 2.02237 2.70399 2.81454 2.94838 3.45607 3.50792 3.61078 3.61280 4.19998 4.29273 4.42160 4.47611 4.53550 4.58351 4.66897 4.92190 4.95281 5.06936 5.08042 5.13280 5.25932 5.27369 5.31849 5.47084 5.56599 5.62652 5.64618 5.71569 5.72977 5.81512 5.99858 6.09914 6.22537 6.32149 6.41252 6.55576 7.08514 7.18035 7.78926 8.04593 8.38246 8.76750 8.86158 9.37547 10.89895 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.028180 B = 0.002734 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.360852 B =10237.821123 C =10607.728380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.074 3.926 3 C -0.182 4.182 4 O -0.308 6.308 5 C 0.147 3.853 6 C -0.212 4.212 7 C -0.046 4.046 8 C -0.045 4.045 9 C 0.172 3.828 10 N -0.278 5.278 11 N -0.301 5.301 12 C 0.190 3.810 13 C 0.277 3.723 14 H 0.074 0.926 15 N -0.819 5.819 16 C -0.527 4.527 17 H 0.076 0.924 18 C 0.090 3.910 19 N -0.886 5.886 20 Si 0.936 3.064 21 H -0.275 1.275 22 H -0.313 1.313 23 H -0.273 1.273 24 O -0.226 6.226 25 C -0.032 4.032 26 C -0.154 4.154 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.317 0.683 37 H 0.352 0.648 38 H 0.269 0.731 39 H 0.146 0.854 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.595 16.362 4.597 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.018 3.982 3 C -0.239 4.239 4 O -0.222 6.222 5 C 0.101 3.899 6 C -0.230 4.230 7 C -0.066 4.066 8 C -0.047 4.047 9 C -0.037 4.037 10 N -0.126 5.126 11 N -0.147 5.147 12 C -0.022 4.022 13 C 0.165 3.835 14 H 0.091 0.909 15 N -0.350 5.350 16 C -0.565 4.565 17 H 0.095 0.905 18 C -0.116 4.116 19 N -0.521 5.521 20 Si 0.767 3.233 21 H -0.200 1.200 22 H -0.242 1.242 23 H -0.198 1.198 24 O -0.104 6.104 25 C -0.052 4.052 26 C -0.172 4.172 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.129 0.871 37 H 0.168 0.832 38 H 0.079 0.921 39 H 0.164 0.836 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.986 15.393 5.107 24.970 hybrid contribution -0.086 1.270 -0.757 1.481 sum -19.071 16.663 4.349 25.696 Atomic orbital electron populations 1.21857 0.92268 1.03323 1.03135 1.22506 0.95569 0.92734 0.87401 1.22407 1.02409 0.95840 1.03290 1.86119 1.28932 1.68042 1.39060 1.19178 0.84370 0.92212 0.94165 1.21168 0.95734 1.06906 0.99222 1.21076 0.94852 0.93369 0.97314 1.17117 0.87813 1.02573 0.97235 1.25207 0.93823 1.00541 0.84099 1.74583 1.01934 1.11501 1.24579 1.74283 1.08635 1.20784 1.10999 1.30772 0.90018 0.87766 0.93674 1.18646 0.74823 1.00912 0.89155 0.90878 1.59570 1.40139 1.07605 1.27653 1.20490 1.09577 0.94830 1.31639 0.90549 1.24924 0.97825 0.95496 0.93395 1.69914 1.31704 1.18409 1.32061 0.85883 0.81525 0.80714 0.75187 1.20032 1.24174 1.19786 1.84889 1.24271 1.59110 1.42168 1.20989 0.91744 0.96005 0.96438 1.20333 0.96572 1.01108 0.99202 0.91407 0.90407 0.91518 0.90564 0.90859 0.91324 0.91606 0.84555 0.84661 0.87144 0.83239 0.92112 0.83629 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.56 37.16 0.36 -0.42 16 2 C 0.07 0.51 2.85 -26.73 -0.08 0.43 16 3 C -0.18 -1.08 9.16 37.16 0.34 -0.74 16 4 O -0.31 -2.98 9.80 -19.23 -0.19 -3.17 16 5 C 0.15 1.57 6.60 -39.10 -0.26 1.31 16 6 C -0.21 -2.20 8.21 -39.49 -0.32 -2.52 16 7 C -0.05 -0.58 9.72 -39.22 -0.38 -0.96 16 8 C -0.05 -0.67 5.87 -104.97 -0.62 -1.29 16 9 C 0.17 3.23 7.99 -13.89 -0.11 3.12 16 10 N -0.28 -5.78 11.91 32.06 0.38 -5.40 16 11 N -0.30 -6.83 12.08 32.58 0.39 -6.43 16 12 C 0.19 4.22 7.23 -12.91 -0.09 4.13 16 13 C 0.28 6.38 2.65 -70.01 -0.19 6.20 16 14 H 0.07 1.65 7.20 -51.93 -0.37 1.27 16 15 N -0.82 -16.92 6.75 -6.65 -0.04 -16.96 16 16 C -0.53 -14.57 9.29 -34.44 -0.32 -14.89 16 17 H 0.08 2.37 7.98 -52.48 -0.42 1.95 16 18 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 19 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 20 Si 0.94 22.53 26.03 -169.99 -4.42 18.10 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.31 -7.58 7.11 56.52 0.40 -7.18 16 23 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 24 O -0.23 -4.62 10.67 3.85 0.04 -4.58 16 25 C -0.03 -0.41 9.69 -39.22 -0.38 -0.79 16 26 C -0.15 -1.66 9.97 -39.49 -0.39 -2.06 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 30 H 0.08 0.49 6.30 -51.93 -0.33 0.16 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.44 6.89 -51.93 -0.36 0.08 16 34 H 0.14 1.09 5.40 -52.48 -0.28 0.80 16 35 H 0.14 1.61 7.93 -52.49 -0.42 1.19 16 36 H 0.32 5.54 9.06 -39.29 -0.36 5.18 16 37 H 0.35 7.33 8.87 -39.30 -0.35 6.98 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.15 1.78 7.86 -52.49 -0.41 1.37 16 40 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 340.79 15.07 5.14 5.14 Total: -1.00 -32.24 340.79 -5.47 -37.72 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.00 Total: 7.34 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -2.54 Total: -6.05 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 1.50 Total: -54.50 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.15 Total: -7.75 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.42 Total: 18.10 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.24 -5.47 -37.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217717869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.118 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds