Wall clock time and date at job start Tue Mar 31 2020 08:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46984 * 2 1 4 4 O 1.42905 * 109.47177 * 119.99655 * 2 1 3 5 5 C 1.35836 * 116.99777 * 155.37186 * 4 2 1 6 6 C 1.38888 * 119.91512 * 5.08969 * 5 4 2 7 7 C 1.37818 * 120.08997 * 179.76624 * 6 5 4 8 8 C 1.39623 * 119.90749 * 0.50331 * 7 6 5 9 9 C 1.47772 * 120.08397 * 179.76895 * 8 7 6 10 10 N 1.31284 * 126.38487 * 180.02562 * 9 8 7 11 11 N 1.28658 * 109.24702 * 179.97438 * 10 9 8 12 12 C 1.30341 * 109.54566 * 359.97438 * 11 10 9 13 13 C 1.50701 * 126.18711 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47238 * 194.97846 * 13 12 11 15 15 N 1.46905 * 109.46962 * 314.97486 * 13 12 11 16 16 C 1.50696 * 109.47460 * 74.97336 * 13 12 11 17 17 H 1.08007 * 119.99594 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00337 * 179.97438 * 16 13 12 19 19 N 1.31507 * 120.00061 * 179.97438 * 18 16 13 20 20 Si 1.86801 * 119.99697 * 0.02562 * 18 16 13 21 21 H 1.48508 * 109.47056 * 89.99799 * 20 18 16 22 22 H 1.48497 * 109.47130 * 209.99530 * 20 18 16 23 23 H 1.48498 * 109.47195 * 329.99687 * 20 18 16 24 24 O 1.34463 * 107.63379 * 359.75750 * 12 11 10 25 25 C 1.39615 * 119.82872 * 359.74716 * 8 7 6 26 26 C 1.37816 * 119.91299 * 0.02562 * 25 8 7 27 27 H 1.08998 * 109.47499 * 299.99851 * 1 2 3 28 28 H 1.09001 * 109.47225 * 60.00448 * 1 2 3 29 29 H 1.09007 * 109.46815 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47499 * 240.00149 * 2 1 3 31 31 H 1.09001 * 109.46774 * 299.99829 * 3 2 1 32 32 H 1.08995 * 109.47286 * 60.00081 * 3 2 1 33 33 H 1.08998 * 109.47423 * 180.02562 * 3 2 1 34 34 H 1.08006 * 119.95414 * 359.97438 * 6 5 4 35 35 H 1.07999 * 120.04719 * 180.27517 * 7 6 5 36 36 H 1.00901 * 110.99553 * 296.04601 * 15 13 12 37 37 H 1.00893 * 110.99962 * 59.99987 * 15 13 12 38 38 H 0.97004 * 120.00120 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.04677 * 180.02562 * 25 8 7 40 40 H 1.08002 * 119.95934 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2492 -1.2177 1.1006 6 6 4.0353 -1.0141 -0.0262 7 6 5.2986 -1.5604 -0.0953 8 6 5.7839 -2.3283 0.9651 9 6 7.1360 -2.9202 0.8930 10 7 7.7127 -3.6590 1.8122 11 7 8.8862 -3.9988 1.4086 12 6 9.1033 -3.4955 0.2261 13 6 10.3565 -3.6600 -0.5945 14 1 10.3614 -2.9269 -1.4012 15 7 11.5327 -3.4541 0.2613 16 6 10.3966 -5.0490 -1.1776 17 1 9.5944 -5.7431 -0.9746 18 6 11.4566 -5.4333 -1.9711 19 7 11.4918 -6.6456 -2.4795 20 14 12.8436 -4.2324 -2.3227 21 1 13.8941 -4.3710 -1.2821 22 1 13.4264 -4.5261 -3.6566 23 1 12.3130 -2.8455 -2.3088 24 8 8.0046 -2.8079 -0.1319 25 6 4.9887 -2.5350 2.0938 26 6 3.7282 -1.9814 2.1572 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 3.6572 -0.4239 -0.8480 35 1 5.9110 -1.3979 -0.9699 36 1 11.5629 -2.5088 0.6129 37 1 11.5511 -4.1219 1.0173 38 1 12.2378 -6.9162 -3.0374 39 1 5.3607 -3.1281 2.9162 40 1 3.1125 -2.1405 3.0302 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217717869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:37 Heat of formation + Delta-G solvation = -5.066580 kcal Electronic energy + Delta-G solvation = -23547.853566 eV Core-core repulsion = 19942.711418 eV Total energy + Delta-G solvation = -3605.142148 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.13467 -41.40887 -38.94133 -37.27197 -37.07027 -34.43482 -34.11196 -32.73748 -32.15161 -30.04035 -28.67436 -28.13825 -25.71619 -25.39881 -24.10969 -23.06011 -22.48908 -21.62030 -19.49558 -19.31831 -18.63424 -18.15302 -17.42213 -17.09209 -16.86729 -16.49393 -16.19023 -15.88498 -15.71451 -15.10487 -14.70995 -14.50619 -14.42292 -14.09694 -13.89774 -13.58196 -13.50431 -13.31412 -13.15778 -13.03314 -12.96515 -12.81975 -12.71438 -12.31925 -12.13954 -11.92175 -11.76295 -11.67642 -11.60600 -10.85062 -10.79521 -10.21656 -9.91438 -9.13399 -8.34610 -6.55300 -0.55427 0.19139 0.61362 1.20476 1.40225 1.53058 1.60981 1.72756 2.09047 2.46984 2.60422 2.79004 2.97361 3.39474 3.63501 3.73016 3.84260 3.87584 3.94208 4.02659 4.06708 4.15836 4.30422 4.34303 4.43875 4.50449 4.71130 4.78407 4.81121 4.83174 4.87637 4.89112 5.06431 5.13086 5.19708 5.24742 5.30109 5.30875 5.50656 5.92131 6.12826 6.31867 6.52802 6.67702 7.20350 7.24083 8.78591 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.028180 B = 0.002734 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.360852 B =10237.821123 C =10607.728380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 C -0.181 4.181 4 O -0.314 6.314 5 C 0.159 3.841 6 C -0.205 4.205 7 C -0.043 4.043 8 C -0.084 4.084 9 C 0.196 3.804 10 N -0.309 5.309 11 N -0.318 5.318 12 C 0.171 3.829 13 C 0.287 3.713 14 H 0.086 0.914 15 N -0.814 5.814 16 C -0.532 4.532 17 H 0.024 0.976 18 C 0.038 3.962 19 N -0.936 5.936 20 Si 1.004 2.996 21 H -0.270 1.270 22 H -0.315 1.315 23 H -0.248 1.248 24 O -0.229 6.229 25 C -0.029 4.029 26 C -0.153 4.153 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.164 0.836 35 H 0.139 0.861 36 H 0.341 0.659 37 H 0.352 0.648 38 H 0.273 0.727 39 H 0.144 0.856 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.070 19.418 4.386 28.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 C -0.238 4.238 4 O -0.227 6.227 5 C 0.112 3.888 6 C -0.223 4.223 7 C -0.063 4.063 8 C -0.086 4.086 9 C -0.013 4.013 10 N -0.155 5.155 11 N -0.163 5.163 12 C -0.043 4.043 13 C 0.174 3.826 14 H 0.104 0.896 15 N -0.346 5.346 16 C -0.571 4.571 17 H 0.042 0.958 18 C -0.163 4.163 19 N -0.574 5.574 20 Si 0.831 3.169 21 H -0.196 1.196 22 H -0.244 1.244 23 H -0.172 1.172 24 O -0.108 6.108 25 C -0.049 4.049 26 C -0.172 4.172 27 H 0.085 0.915 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.182 0.818 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.166 0.834 38 H 0.082 0.918 39 H 0.162 0.838 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -20.494 18.471 4.928 28.026 hybrid contribution 0.016 0.389 -0.640 0.749 sum -20.478 18.860 4.288 28.167 Atomic orbital electron populations 1.21892 0.90964 1.03396 1.04158 1.22848 0.96640 0.93112 0.86612 1.22409 1.01897 0.95242 1.04227 1.86143 1.28079 1.67808 1.40685 1.19329 0.84722 0.90975 0.93802 1.21393 0.94624 1.06362 0.99937 1.21181 0.95698 0.92750 0.96689 1.17315 0.86540 1.05296 0.99448 1.26038 0.94352 0.98242 0.82632 1.74527 1.01812 1.13602 1.25599 1.74192 1.09766 1.20919 1.11462 1.30463 0.90616 0.89298 0.93907 1.18280 0.76076 0.98291 0.89922 0.89642 1.59323 1.38480 1.09181 1.27629 1.20566 1.08100 0.96371 1.32072 0.95753 1.25848 1.00399 0.97092 0.92981 1.70041 1.33012 1.20735 1.33569 0.84821 0.78006 0.79365 0.74753 1.19557 1.24422 1.17202 1.84867 1.24160 1.59118 1.42661 1.21027 0.92213 0.95919 0.95728 1.20532 0.95905 1.00591 1.00146 0.91476 0.88339 0.91933 0.89778 0.88854 0.91569 0.92341 0.81849 0.84270 0.84546 0.83353 0.91832 0.83807 0.82103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.56 71.98 0.69 -0.42 16 2 C 0.06 0.67 2.85 30.59 0.09 0.76 16 3 C -0.18 -1.57 9.16 71.98 0.66 -0.91 16 4 O -0.31 -5.16 9.80 -91.71 -0.90 -6.06 16 5 C 0.16 2.97 6.60 22.58 0.15 3.12 16 6 C -0.20 -3.70 8.21 22.33 0.18 -3.51 16 7 C -0.04 -1.02 9.72 22.50 0.22 -0.80 16 8 C -0.08 -2.42 5.87 -20.09 -0.12 -2.54 16 9 C 0.20 7.43 7.99 87.30 0.70 8.13 16 10 N -0.31 -13.14 11.91 -166.30 -1.98 -15.12 16 11 N -0.32 -14.77 12.08 -165.31 -2.00 -16.77 16 12 C 0.17 7.70 7.23 88.33 0.64 8.34 16 13 C 0.29 13.20 2.65 43.42 0.12 13.32 16 14 H 0.09 3.72 7.20 -2.39 -0.02 3.70 16 15 N -0.81 -32.60 6.75 -174.95 -1.18 -33.79 16 16 C -0.53 -30.36 9.29 25.60 0.24 -30.12 16 17 H 0.02 1.60 7.98 -2.91 -0.02 1.57 16 18 C 0.04 2.17 5.47 84.66 0.46 2.64 16 19 N -0.94 -57.72 13.96 21.45 0.30 -57.42 16 20 Si 1.00 45.97 26.03 68.60 1.79 47.76 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.31 -14.46 7.11 99.48 0.71 -13.75 16 23 H -0.25 -10.29 6.54 99.48 0.65 -9.64 16 24 O -0.23 -9.44 10.67 -9.15 -0.10 -9.54 16 25 C -0.03 -0.72 9.69 22.50 0.22 -0.50 16 26 C -0.15 -3.00 9.97 22.33 0.22 -2.78 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.08 0.78 6.30 -2.39 -0.02 0.76 16 31 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.61 6.89 -2.39 -0.02 0.59 16 34 H 0.16 2.02 5.40 -2.91 -0.02 2.01 16 35 H 0.14 3.11 7.93 -2.91 -0.02 3.09 16 36 H 0.34 11.16 9.06 -89.69 -0.81 10.35 16 37 H 0.35 14.48 8.87 -89.70 -0.80 13.68 16 38 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.14 3.50 7.86 -2.91 -0.02 3.48 16 40 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -72.02 340.79 -0.18 -72.20 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -0.57 Total: 24.03 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 4.46 Total: -5.29 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -4.86 Total: -123.10 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -1.00 Total: -15.60 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.79 Total: 47.76 kcal Total: -72.02 -0.18 -72.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217717869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.133 kcal (2) G-P(sol) polarization free energy of solvation -72.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds