Wall clock time and date at job start Tue Mar 31 2020 08:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 O 1.42895 * 109.47000 * 240.00331 * 2 1 3 5 5 C 1.35613 * 117.00123 * 269.99572 * 4 2 1 6 6 C 1.39042 * 119.55854 * 180.02562 * 5 4 2 7 7 C 1.38118 * 119.23610 * 180.02562 * 6 5 4 8 8 C 1.39942 * 118.37824 * 359.97438 * 7 6 5 9 9 C 1.48353 * 120.47050 * 179.97438 * 8 7 6 10 10 N 1.30800 * 126.41802 * 0.02562 * 9 8 7 11 11 O 1.21289 * 110.09287 * 180.02562 * 10 9 8 12 12 C 1.33668 * 110.03127 * 359.97438 * 11 10 9 13 13 C 1.50704 * 126.43147 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46978 * 269.97330 * 13 12 11 15 15 C 1.50697 * 109.46919 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00140 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00111 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99848 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00147 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47269 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47273 * 119.99736 * 19 17 15 22 22 H 1.48499 * 109.46904 * 239.99564 * 19 17 15 23 23 N 1.30978 * 107.13341 * 359.72960 * 12 11 10 24 24 C 1.39189 * 119.05867 * 0.02562 * 8 7 6 25 25 N 1.31791 * 120.66045 * 359.72299 * 24 8 7 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 30 30 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 31 31 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 33 33 H 1.08005 * 120.38092 * 359.97438 * 6 5 4 34 34 H 1.08002 * 120.80795 * 179.97438 * 7 6 5 35 35 H 1.08998 * 109.47223 * 29.97888 * 13 12 11 36 36 H 1.09008 * 109.47005 * 149.97345 * 13 12 11 37 37 H 1.09001 * 109.46780 * 299.99926 * 14 13 12 38 38 H 1.08997 * 109.46899 * 60.00499 * 14 13 12 39 39 H 0.97005 * 119.99829 * 180.02562 * 18 17 15 40 40 H 1.07995 * 119.66718 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2117 -2.0102 -1.0654 6 6 2.6752 -2.7186 -2.1684 7 6 2.8814 -4.0798 -2.0579 8 6 2.6138 -4.6955 -0.8300 9 6 2.8186 -6.1550 -0.6599 10 7 3.2452 -6.9907 -1.5712 11 8 3.3019 -8.1126 -1.1138 12 6 2.9092 -8.1066 0.1639 13 6 2.8369 -9.2983 1.0836 14 6 1.4522 -9.9405 0.9784 15 6 1.3798 -11.1317 1.8986 16 1 2.2357 -11.4033 2.4987 17 6 0.2210 -11.8748 1.9743 18 7 -0.8214 -11.5438 1.2439 19 14 0.1310 -13.3510 3.1155 20 1 1.4272 -13.5100 3.8224 21 1 -0.9530 -13.1433 4.1090 22 1 -0.1527 -14.5736 2.3218 23 7 2.6050 -6.8695 0.4682 24 6 2.1519 -3.9194 0.2290 25 7 1.9729 -2.6219 0.0833 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 2.8708 -2.2104 -3.1011 34 1 3.2405 -4.6549 -2.8986 35 1 3.5972 -10.0249 0.7972 36 1 3.0110 -8.9759 2.1103 37 1 0.6920 -9.2137 1.2649 38 1 1.2783 -10.2628 -0.0482 39 1 -1.6369 -12.0664 1.2975 40 1 1.9426 -4.3844 1.1810 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248337036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:42 Heat of formation + Delta-G solvation = 28.647492 kcal Electronic energy + Delta-G solvation = -23101.710644 eV Core-core repulsion = 19498.030448 eV Total energy + Delta-G solvation = -3603.680196 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.54917 -41.85252 -39.48878 -37.09474 -36.24485 -34.63361 -34.25969 -33.58750 -32.03110 -31.12097 -28.18941 -27.76022 -26.00437 -25.45481 -24.33313 -23.55115 -22.45084 -21.73917 -19.65498 -19.21472 -18.83056 -18.37600 -17.83039 -16.96807 -16.83247 -16.48597 -15.82017 -15.75143 -15.47894 -15.12460 -14.94898 -14.54013 -14.31637 -14.23265 -13.71233 -13.58476 -13.43134 -13.34445 -13.22758 -13.09367 -12.84446 -12.79030 -12.54771 -12.20890 -12.03895 -11.93800 -11.89628 -11.72766 -11.32059 -11.20661 -10.85527 -10.80592 -10.56351 -9.52114 -8.19329 -6.30855 -0.55168 0.01242 0.26730 1.33325 1.46517 1.47524 1.60262 1.81548 1.86126 2.39510 2.46620 2.59817 2.86827 3.10707 3.16540 3.68687 3.79350 3.84637 3.96113 4.00817 4.07464 4.25863 4.38000 4.50310 4.54796 4.56637 4.66510 4.70436 4.79405 4.83374 4.87969 4.90324 4.94494 5.02653 5.17511 5.24919 5.27045 5.45997 5.55356 5.79469 6.09887 6.14719 6.58192 6.85520 7.05263 7.39379 8.93276 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.023163 B = 0.002449 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.527296 B =11430.439711 C =12209.425693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.071 3.929 3 C -0.145 4.145 4 O -0.302 6.302 5 C 0.330 3.670 6 C -0.183 4.183 7 C -0.003 4.003 8 C -0.126 4.126 9 C 0.216 3.784 10 N -0.398 5.398 11 O 0.067 5.933 12 C 0.218 3.782 13 C -0.015 4.015 14 C 0.032 3.968 15 C -0.535 4.535 16 H 0.080 0.920 17 C -0.002 4.002 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.253 1.253 21 H -0.284 1.284 22 H -0.282 1.282 23 N -0.504 5.504 24 C 0.188 3.812 25 N -0.546 5.546 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.178 0.822 34 H 0.161 0.839 35 H 0.118 0.882 36 H 0.116 0.884 37 H -0.006 1.006 38 H -0.002 1.002 39 H 0.263 0.737 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.910 22.601 -4.073 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.015 3.985 3 C -0.202 4.202 4 O -0.209 6.209 5 C 0.151 3.849 6 C -0.203 4.203 7 C -0.029 4.029 8 C -0.131 4.131 9 C -0.055 4.055 10 N -0.109 5.109 11 O 0.012 5.988 12 C -0.002 4.002 13 C -0.053 4.053 14 C -0.006 4.006 15 C -0.573 4.573 16 H 0.098 0.902 17 C -0.200 4.200 18 N -0.576 5.576 19 Si 0.794 3.206 20 H -0.177 1.177 21 H -0.210 1.210 22 H -0.208 1.208 23 N -0.237 5.237 24 C 0.029 3.971 25 N -0.269 5.269 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.195 0.805 34 H 0.179 0.821 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.013 0.987 38 H 0.017 0.983 39 H 0.072 0.928 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.576 23.815 -4.179 25.338 hybrid contribution -0.421 -1.653 -0.059 1.706 sum 7.156 22.163 -4.237 23.672 Atomic orbital electron populations 1.22206 0.94211 1.02059 1.03845 1.22647 0.95044 0.93895 0.86889 1.21912 1.01937 0.92066 1.04245 1.86296 1.79527 1.15182 1.39864 1.20286 0.89520 0.85326 0.89813 1.21238 1.05928 0.93049 1.00101 1.21590 0.91568 0.93921 0.95823 1.18266 1.10500 0.86578 0.97759 1.23917 0.99097 0.96835 0.85623 1.74767 1.22981 0.90787 1.22407 1.85241 1.62618 1.25013 1.25962 1.29487 0.90411 0.96128 0.84141 1.20571 1.01391 0.87982 0.95386 1.18963 0.90369 0.94832 0.96432 1.21602 0.99528 1.11776 1.24377 0.90233 1.26003 0.95371 1.01098 0.97493 1.70127 1.04049 1.41441 1.41986 0.85331 0.78738 0.78277 0.78291 1.17688 1.20974 1.20828 1.72011 1.23201 1.02299 1.26221 1.22563 0.89236 0.86995 0.98288 1.67389 1.22835 1.11580 1.25126 0.93967 0.89178 0.91376 0.90110 0.88520 0.91872 0.91071 0.80482 0.82100 0.86340 0.86539 0.98748 0.98334 0.92828 0.81147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.53 71.98 0.69 -1.89 16 2 C 0.07 1.19 3.11 30.60 0.10 1.29 16 3 C -0.14 -1.60 9.56 71.98 0.69 -0.91 16 4 O -0.30 -6.21 9.76 -89.25 -0.87 -7.08 16 5 C 0.33 7.59 7.46 84.81 0.63 8.22 16 6 C -0.18 -3.62 10.03 22.43 0.22 -3.40 16 7 C 0.00 -0.06 9.82 22.65 0.22 0.16 16 8 C -0.13 -3.61 5.89 -19.94 -0.12 -3.73 16 9 C 0.22 7.41 7.81 137.26 1.07 8.49 16 10 N -0.40 -14.02 11.93 -59.07 -0.70 -14.72 16 11 O 0.07 2.44 11.29 74.62 0.84 3.28 16 12 C 0.22 8.01 7.75 88.36 0.68 8.69 16 13 C -0.01 -0.53 5.78 29.85 0.17 -0.36 16 14 C 0.03 1.59 4.95 29.85 0.15 1.74 16 15 C -0.53 -27.95 9.11 25.60 0.23 -27.71 16 16 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 17 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 18 N -0.94 -55.60 13.29 21.45 0.28 -55.32 16 19 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 20 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 23 N -0.50 -18.71 11.27 -302.44 -3.41 -22.12 16 24 C 0.19 5.14 10.86 84.93 0.92 6.07 16 25 N -0.55 -14.00 8.62 -308.07 -2.65 -16.65 16 26 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.55 6.97 -2.39 -0.02 1.53 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 34 H 0.16 3.25 7.95 -2.91 -0.02 3.22 16 35 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 36 H 0.12 3.91 8.14 -2.38 -0.02 3.89 16 37 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 40 H 0.17 4.65 7.88 -2.91 -0.02 4.63 16 Total: -1.00 -65.12 352.46 2.69 -62.43 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.05 Total: 8.92 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 6.13 Total: -2.98 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -6.48 Total: -108.81 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.03 Total: -3.79 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -65.12 2.69 -62.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248337036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.076 kcal (2) G-P(sol) polarization free energy of solvation -65.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds