Wall clock time and date at job start Tue Mar 31 2020 08:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47395 * 2 1 4 4 H 1.08998 * 109.46943 * 305.59641 * 3 2 1 5 5 C 1.50705 * 109.47021 * 65.59385 * 3 2 1 6 6 H 1.08002 * 119.99913 * 65.26143 * 5 3 2 7 7 C 1.37875 * 119.99882 * 245.26185 * 5 3 2 8 8 N 1.31520 * 119.99931 * 173.48637 * 7 5 3 9 9 Si 1.86804 * 120.00180 * 353.48752 * 7 5 3 10 10 H 1.48496 * 109.47066 * 84.70107 * 9 7 5 11 11 H 1.48500 * 109.46904 * 204.70360 * 9 7 5 12 12 H 1.48501 * 109.46741 * 324.69908 * 9 7 5 13 13 N 1.46492 * 109.47169 * 185.59251 * 3 2 1 14 14 N 1.40368 * 126.09878 * 300.02566 * 13 3 2 15 15 C 1.31160 * 108.29192 * 179.87060 * 14 13 3 16 16 C 1.50702 * 125.98823 * 179.97438 * 15 14 13 17 17 F 1.39903 * 109.46936 * 5.02435 * 16 15 14 18 18 F 1.39897 * 109.47196 * 125.02132 * 16 15 14 19 19 F 1.39901 * 109.47062 * 245.02694 * 16 15 14 20 20 C 1.39024 * 108.02958 * 0.02562 * 15 14 13 21 21 C 1.34129 * 126.09090 * 119.71357 * 13 3 2 22 22 C 1.50802 * 128.79837 * 0.95333 * 21 13 3 23 23 N 1.47292 * 108.31933 * 163.06556 * 22 21 13 24 24 C 1.46936 * 111.47909 * 51.14146 * 23 22 21 25 25 C 1.50877 * 128.76621 * 180.14492 * 20 15 14 26 26 H 1.08998 * 109.46552 * 54.05837 * 1 2 3 27 27 H 1.08998 * 109.47246 * 174.05913 * 1 2 3 28 28 H 1.09008 * 109.46972 * 294.06171 * 1 2 3 29 29 H 1.08999 * 109.46870 * 119.99914 * 2 1 3 30 30 H 1.09005 * 109.46961 * 240.00121 * 2 1 3 31 31 H 0.96992 * 119.99926 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.84544 * 43.25276 * 22 21 13 33 33 H 1.08995 * 109.53693 * 282.70068 * 22 21 13 34 34 H 1.00899 * 110.99603 * 286.83582 * 23 22 21 35 35 H 1.09000 * 109.44317 * 168.37169 * 24 23 22 36 36 H 1.08997 * 109.41896 * 48.45638 * 24 23 22 37 37 H 1.09002 * 109.79212 * 283.74843 * 25 20 15 38 38 H 1.08999 * 109.79147 * 44.52866 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5973 1.9844 -0.8356 5 6 1.6540 2.1118 1.2939 6 1 2.0712 1.7638 2.2273 7 6 0.7683 3.1684 1.2860 8 7 0.3323 3.6695 2.4211 9 14 0.1875 3.8882 -0.3370 10 1 -0.9619 3.0977 -0.8460 11 1 -0.2332 5.2974 -0.1311 12 1 1.2961 3.8418 -1.3240 13 7 3.4988 1.4446 -0.1346 14 7 4.4117 0.8467 0.7483 15 6 5.6234 1.0580 0.2930 16 6 6.9044 0.5891 0.9335 17 9 6.6060 -0.2127 2.0405 18 9 7.6451 -0.1524 0.0068 19 9 7.6513 1.6971 1.3481 20 6 5.5192 1.7913 -0.8835 21 6 4.1999 2.0133 -1.1266 22 6 3.6945 2.7916 -2.3152 23 7 4.8218 3.5481 -2.8866 24 6 5.9832 2.6814 -3.1294 25 6 6.6199 2.2844 -1.7900 26 1 -0.3632 0.6032 -0.8320 27 1 -0.3633 -1.0221 -0.1064 28 1 -0.3633 0.4190 0.9384 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 -0.2905 4.4130 2.4156 32 1 2.9112 3.4811 -2.0001 33 1 3.2988 2.1022 -3.0609 34 1 5.0696 4.3282 -2.2967 35 1 6.7151 3.2166 -3.7345 36 1 5.6617 1.7842 -3.6583 37 1 7.1070 3.1505 -1.3418 38 1 7.3506 1.4913 -1.9485 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255180003.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:47 Heat of formation + Delta-G solvation = -83.155081 kcal Electronic energy + Delta-G solvation = -26261.958115 eV Core-core repulsion = 22111.573056 eV Total energy + Delta-G solvation = -4150.385060 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.125 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.85266 -47.39817 -47.33033 -41.25829 -37.05566 -35.57960 -32.60134 -31.99254 -30.24514 -29.36014 -27.81930 -25.74266 -24.13437 -23.69995 -22.37614 -21.20750 -19.50314 -19.25306 -18.25270 -17.96384 -17.54178 -17.04735 -15.94960 -15.58242 -14.83203 -14.66645 -14.39291 -14.17883 -14.08090 -13.86311 -13.80205 -13.54322 -13.50754 -13.36652 -13.14821 -13.11463 -12.97831 -12.36563 -12.30525 -11.91498 -11.52137 -11.44793 -11.37093 -11.16384 -10.91493 -10.64206 -10.37320 -10.19689 -10.02712 -9.54147 -9.01380 -8.78841 -8.62716 -7.85291 -6.51823 -4.57186 2.25366 2.57075 2.66501 2.93829 2.98314 3.08052 3.27116 3.97753 4.07826 4.20450 4.40361 4.71140 4.79173 5.00728 5.02645 5.10963 5.29065 5.48598 5.57058 5.63073 5.76677 5.82250 5.88622 5.90392 6.00207 6.09097 6.18966 6.37058 6.38834 6.50233 6.74608 6.87725 6.89505 6.94530 7.15873 7.30692 7.60594 7.97872 8.17197 8.63277 9.03797 10.58803 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.006315 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.062090 B = 4432.594727 C = 5270.627386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.231 3.769 4 H 0.069 0.931 5 C -0.511 4.511 6 H 0.089 0.911 7 C 0.084 3.916 8 N -0.867 5.867 9 Si 0.865 3.135 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.258 1.258 13 N -0.283 5.283 14 N -0.228 5.228 15 C -0.042 4.042 16 C 0.557 3.443 17 F -0.170 7.170 18 F -0.175 7.175 19 F -0.174 7.174 20 C -0.225 4.225 21 C 0.037 3.963 22 C 0.115 3.885 23 N -0.674 5.674 24 C 0.059 3.941 25 C -0.079 4.079 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.273 0.727 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.347 0.653 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.315 -2.589 -9.935 13.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.155 4.155 3 C 0.136 3.864 4 H 0.086 0.914 5 C -0.550 4.550 6 H 0.107 0.893 7 C -0.123 4.123 8 N -0.501 5.501 9 Si 0.691 3.309 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.184 1.184 13 N -0.065 5.065 14 N -0.054 5.054 15 C -0.205 4.205 16 C 0.501 3.499 17 F -0.152 7.152 18 F -0.157 7.157 19 F -0.155 7.155 20 C -0.238 4.238 21 C -0.096 4.096 22 C -0.016 4.016 23 N -0.301 5.301 24 C -0.070 4.070 25 C -0.119 4.119 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.164 0.836 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.094 -3.029 -9.523 12.256 hybrid contribution 0.627 0.622 -0.105 0.889 sum 7.721 -2.407 -9.628 12.574 Atomic orbital electron populations 1.21644 0.95012 1.00023 1.02941 1.21761 0.96402 0.96483 1.00816 1.20150 0.70933 0.95761 0.99607 0.91377 1.21036 1.26069 1.15761 0.92135 0.89257 1.25142 0.95241 0.95354 0.96581 1.69865 1.30101 1.24255 1.25850 0.87121 0.79946 0.79741 0.84051 1.18987 1.20497 1.18356 1.50651 1.08020 1.34781 1.13097 1.77540 0.96214 1.17241 1.14400 1.21363 0.93064 1.07450 0.98575 1.16977 0.82441 0.74752 0.75710 1.93209 1.93238 1.74249 1.54473 1.93171 1.78651 1.77542 1.66302 1.93196 1.78273 1.53499 1.90561 1.19274 0.94221 1.10997 0.99335 1.22017 0.92155 1.00806 0.94661 1.20998 0.94416 0.96039 0.90127 1.60842 1.07665 1.10914 1.50717 1.22108 0.92089 0.97246 0.95604 1.20778 0.95583 1.00816 0.94716 0.93838 0.93643 0.90730 0.91175 0.94404 0.91672 0.88187 0.89023 0.83569 0.90078 0.90747 0.91241 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.64 37.16 0.36 -2.11 16 2 C -0.12 -2.26 5.65 -26.73 -0.15 -2.42 16 3 C 0.23 5.01 2.50 -69.08 -0.17 4.84 16 4 H 0.07 1.41 3.87 -51.93 -0.20 1.21 16 5 C -0.51 -13.14 8.23 -34.44 -0.28 -13.42 16 6 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 7 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 8 N -0.87 -24.05 13.96 55.43 0.77 -23.28 16 9 Si 0.86 18.41 27.05 -169.99 -4.60 13.81 16 10 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.26 -4.99 4.36 56.52 0.25 -4.75 16 13 N -0.28 -6.10 3.25 -51.81 -0.17 -6.26 16 14 N -0.23 -5.11 12.23 33.56 0.41 -4.70 16 15 C -0.04 -0.83 6.49 -82.59 -0.54 -1.37 16 16 C 0.56 9.74 3.40 36.01 0.12 9.86 16 17 F -0.17 -3.12 17.14 2.25 0.04 -3.08 16 18 F -0.18 -2.76 16.89 2.25 0.04 -2.72 16 19 F -0.17 -2.93 17.30 2.25 0.04 -2.89 16 20 C -0.23 -4.02 5.97 -105.06 -0.63 -4.64 16 21 C 0.04 0.70 6.81 -82.35 -0.56 0.14 16 22 C 0.12 1.80 6.32 -4.71 -0.03 1.77 16 23 N -0.67 -8.94 6.87 -114.37 -0.79 -9.72 16 24 C 0.06 0.70 6.54 -3.53 -0.02 0.67 16 25 C -0.08 -1.07 6.29 -27.52 -0.17 -1.25 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.48 7.60 -51.92 -0.39 1.09 16 29 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.10 1.67 5.64 -51.93 -0.29 1.38 16 33 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.35 4.46 8.78 -39.29 -0.35 4.11 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.95 7.73 -51.93 -0.40 0.55 16 LS Contribution 321.60 15.07 4.85 4.85 Total: -1.00 -27.64 321.60 -6.31 -33.94 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -4.73 Total: 5.89 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.17 Total: -5.85 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.23 Total: -43.96 kcal Atomic # 9 Polarization: -8.80 SS G_CDS: 0.12 Total: -8.69 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.60 Total: 13.81 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.64 -6.31 -33.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255180003.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.210 kcal (2) G-P(sol) polarization free energy of solvation -27.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds