Wall clock time and date at job start Tue Mar 31 2020 08:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47395 * 2 1 4 4 H 1.08998 * 109.46943 * 305.59641 * 3 2 1 5 5 C 1.50705 * 109.47021 * 65.59385 * 3 2 1 6 6 H 1.08002 * 119.99913 * 65.26143 * 5 3 2 7 7 C 1.37875 * 119.99882 * 245.26185 * 5 3 2 8 8 N 1.31520 * 119.99931 * 173.48637 * 7 5 3 9 9 Si 1.86804 * 120.00180 * 353.48752 * 7 5 3 10 10 H 1.48496 * 109.47066 * 84.70107 * 9 7 5 11 11 H 1.48500 * 109.46904 * 204.70360 * 9 7 5 12 12 H 1.48501 * 109.46741 * 324.69908 * 9 7 5 13 13 N 1.46492 * 109.47169 * 185.59251 * 3 2 1 14 14 N 1.40368 * 126.09878 * 300.02566 * 13 3 2 15 15 C 1.31160 * 108.29192 * 179.87060 * 14 13 3 16 16 C 1.50702 * 125.98823 * 179.97438 * 15 14 13 17 17 F 1.39903 * 109.46936 * 5.02435 * 16 15 14 18 18 F 1.39897 * 109.47196 * 125.02132 * 16 15 14 19 19 F 1.39901 * 109.47062 * 245.02694 * 16 15 14 20 20 C 1.39024 * 108.02958 * 0.02562 * 15 14 13 21 21 C 1.34129 * 126.09090 * 119.71357 * 13 3 2 22 22 C 1.50802 * 128.79837 * 0.95333 * 21 13 3 23 23 N 1.47292 * 108.31933 * 163.06556 * 22 21 13 24 24 C 1.46936 * 111.47909 * 51.14146 * 23 22 21 25 25 C 1.50877 * 128.76621 * 180.14492 * 20 15 14 26 26 H 1.08998 * 109.46552 * 54.05837 * 1 2 3 27 27 H 1.08998 * 109.47246 * 174.05913 * 1 2 3 28 28 H 1.09008 * 109.46972 * 294.06171 * 1 2 3 29 29 H 1.08999 * 109.46870 * 119.99914 * 2 1 3 30 30 H 1.09005 * 109.46961 * 240.00121 * 2 1 3 31 31 H 0.96992 * 119.99926 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.84544 * 43.25276 * 22 21 13 33 33 H 1.08995 * 109.53693 * 282.70068 * 22 21 13 34 34 H 1.00899 * 110.99603 * 286.83582 * 23 22 21 35 35 H 1.09000 * 109.44317 * 168.37169 * 24 23 22 36 36 H 1.08997 * 109.41896 * 48.45638 * 24 23 22 37 37 H 1.09002 * 109.79212 * 283.74843 * 25 20 15 38 38 H 1.08999 * 109.79147 * 44.52866 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5973 1.9844 -0.8356 5 6 1.6540 2.1118 1.2939 6 1 2.0712 1.7638 2.2273 7 6 0.7683 3.1684 1.2860 8 7 0.3323 3.6695 2.4211 9 14 0.1875 3.8882 -0.3370 10 1 -0.9619 3.0977 -0.8460 11 1 -0.2332 5.2974 -0.1311 12 1 1.2961 3.8418 -1.3240 13 7 3.4988 1.4446 -0.1346 14 7 4.4117 0.8467 0.7483 15 6 5.6234 1.0580 0.2930 16 6 6.9044 0.5891 0.9335 17 9 6.6060 -0.2127 2.0405 18 9 7.6451 -0.1524 0.0068 19 9 7.6513 1.6971 1.3481 20 6 5.5192 1.7913 -0.8835 21 6 4.1999 2.0133 -1.1266 22 6 3.6945 2.7916 -2.3152 23 7 4.8218 3.5481 -2.8866 24 6 5.9832 2.6814 -3.1294 25 6 6.6199 2.2844 -1.7900 26 1 -0.3632 0.6032 -0.8320 27 1 -0.3633 -1.0221 -0.1064 28 1 -0.3633 0.4190 0.9384 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 -0.2905 4.4130 2.4156 32 1 2.9112 3.4811 -2.0001 33 1 3.2988 2.1022 -3.0609 34 1 5.0696 4.3282 -2.2967 35 1 6.7151 3.2166 -3.7345 36 1 5.6617 1.7842 -3.6583 37 1 7.1070 3.1505 -1.3418 38 1 7.3506 1.4913 -1.9485 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255180003.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:47 Heat of formation + Delta-G solvation = -101.632957 kcal Electronic energy + Delta-G solvation = -26262.759376 eV Core-core repulsion = 22111.573056 eV Total energy + Delta-G solvation = -4151.186321 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.125 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.25801 -48.76978 -48.76168 -42.73589 -38.25070 -37.20685 -34.41058 -33.50531 -31.53143 -30.68280 -29.43938 -27.39930 -25.49291 -25.15578 -23.55117 -22.73187 -21.11170 -20.60977 -19.65194 -19.51531 -19.14714 -18.57543 -17.46952 -16.90064 -16.36147 -15.94570 -15.76747 -15.57699 -15.51729 -15.41060 -15.19523 -14.93495 -14.91350 -14.86125 -14.70948 -14.48122 -14.14089 -13.83946 -13.57575 -13.33881 -13.11377 -12.83945 -12.79425 -12.65732 -12.17081 -12.12629 -11.96377 -11.77880 -11.63092 -11.24726 -10.91489 -10.38098 -9.71024 -9.30957 -8.47828 -6.61257 0.70124 1.07813 1.21849 1.28347 1.32207 1.39473 1.79656 2.18646 2.61285 2.88327 2.97509 3.21968 3.30681 3.61532 3.73377 3.91628 4.06945 4.18159 4.23172 4.33628 4.39954 4.50057 4.54392 4.64159 4.80598 4.86092 4.90730 5.05101 5.08552 5.12925 5.18511 5.30221 5.40775 5.51735 5.83408 5.92844 6.21500 6.30389 6.50316 6.56937 7.05513 8.67669 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.006315 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.062090 B = 4432.594727 C = 5270.627386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C 0.240 3.760 4 H 0.088 0.912 5 C -0.519 4.519 6 H 0.026 0.974 7 C 0.031 3.969 8 N -0.925 5.925 9 Si 0.925 3.075 10 H -0.243 1.243 11 H -0.285 1.285 12 H -0.224 1.224 13 N -0.303 5.303 14 N -0.280 5.280 15 C -0.052 4.052 16 C 0.564 3.436 17 F -0.179 7.179 18 F -0.161 7.161 19 F -0.169 7.169 20 C -0.224 4.224 21 C 0.033 3.967 22 C 0.117 3.883 23 N -0.666 5.666 24 C 0.063 3.937 25 C -0.077 4.077 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.274 0.726 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.350 0.650 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.202 -2.241 -14.065 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.151 4.151 3 C 0.143 3.857 4 H 0.106 0.894 5 C -0.558 4.558 6 H 0.044 0.956 7 C -0.171 4.171 8 N -0.562 5.562 9 Si 0.746 3.254 10 H -0.166 1.166 11 H -0.210 1.210 12 H -0.148 1.148 13 N -0.085 5.085 14 N -0.106 5.106 15 C -0.214 4.214 16 C 0.508 3.492 17 F -0.160 7.160 18 F -0.142 7.142 19 F -0.150 7.150 20 C -0.237 4.237 21 C -0.100 4.100 22 C -0.014 4.014 23 N -0.293 5.293 24 C -0.066 4.066 25 C -0.117 4.117 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.168 0.832 35 H 0.131 0.869 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.017 -2.702 -13.665 16.072 hybrid contribution 0.519 0.442 1.248 1.422 sum 8.536 -2.261 -12.417 15.236 Atomic orbital electron populations 1.21597 0.93554 1.02075 1.01883 1.21719 0.97637 0.95188 1.00582 1.19996 0.71250 0.96638 0.97794 0.89447 1.20949 1.26463 1.16541 0.91837 0.95571 1.26050 0.94960 0.95389 1.00734 1.70032 1.31746 1.25458 1.28948 0.86157 0.81085 0.78524 0.79589 1.16627 1.21043 1.14772 1.50169 1.07899 1.36246 1.14224 1.77480 0.97593 1.19567 1.15989 1.21825 0.92991 1.07295 0.99302 1.16767 0.82026 0.74834 0.75578 1.93194 1.93351 1.74481 1.54967 1.93196 1.78133 1.77170 1.65711 1.93204 1.77974 1.53306 1.90525 1.19829 0.95341 1.09656 0.98871 1.22757 0.92428 1.00056 0.94795 1.21158 0.95134 0.95929 0.89194 1.60906 1.07762 1.10789 1.49878 1.22221 0.91999 0.97686 0.94689 1.20940 0.94518 1.01385 0.94822 0.92199 0.90635 0.93827 0.93872 0.92026 0.91643 0.89019 0.86943 0.83246 0.86897 0.90302 0.90377 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 9.64 71.98 0.69 -3.92 16 2 C -0.11 -4.38 5.65 30.60 0.17 -4.21 16 3 C 0.24 10.40 2.50 44.25 0.11 10.51 16 4 H 0.09 3.41 3.87 -2.39 -0.01 3.40 16 5 C -0.52 -28.04 8.23 25.60 0.21 -27.83 16 6 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 7 C 0.03 1.63 5.47 84.65 0.46 2.09 16 8 N -0.93 -54.11 13.96 21.45 0.30 -53.82 16 9 Si 0.92 37.04 27.05 68.60 1.86 38.90 16 10 H -0.24 -8.87 7.11 99.48 0.71 -8.16 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.22 -7.65 4.36 99.48 0.43 -7.21 16 13 N -0.30 -13.02 3.25 -317.82 -1.03 -14.05 16 14 N -0.28 -12.88 12.23 -47.75 -0.58 -13.46 16 15 C -0.05 -2.02 6.49 42.85 0.28 -1.75 16 16 C 0.56 19.35 3.40 71.24 0.24 19.59 16 17 F -0.18 -6.62 17.14 44.97 0.77 -5.85 16 18 F -0.16 -4.78 16.89 44.97 0.76 -4.02 16 19 F -0.17 -5.52 17.30 44.97 0.78 -4.74 16 20 C -0.22 -7.54 5.97 -20.15 -0.12 -7.66 16 21 C 0.03 1.17 6.81 41.71 0.28 1.45 16 22 C 0.12 3.22 6.32 85.51 0.54 3.76 16 23 N -0.67 -14.77 6.87 -515.77 -3.54 -18.32 16 24 C 0.06 1.19 6.54 86.47 0.57 1.75 16 25 C -0.08 -1.80 6.29 30.08 0.19 -1.61 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.04 1.76 7.60 -2.38 -0.02 1.74 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.09 2.69 5.64 -2.39 -0.01 2.68 16 33 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.35 7.61 8.78 -89.70 -0.79 6.82 16 35 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.47 8.07 -2.39 -0.02 1.45 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.09 1.87 7.73 -2.39 -0.02 1.85 16 Total: -1.00 -65.02 321.60 2.98 -62.04 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.05 Total: 21.13 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 3.63 Total: -7.82 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -4.86 Total: -99.64 kcal Atomic # 9 Polarization: -16.91 SS G_CDS: 2.31 Total: -14.60 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 1.86 Total: 38.90 kcal Total: -65.02 2.98 -62.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255180003.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.592 kcal (2) G-P(sol) polarization free energy of solvation -65.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds