Wall clock time and date at job start Tue Mar 31 2020 08:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34667 * 120.00102 * 2 1 4 4 C 1.46655 * 119.99639 * 5.59230 * 3 2 1 5 5 O 1.21670 * 120.00264 * 5.54931 * 4 3 2 6 6 N 1.34782 * 120.00090 * 185.54249 * 4 3 2 7 7 C 1.47421 * 125.64454 * 0.02772 * 6 4 3 8 8 C 1.54910 * 104.83199 * 204.08966 * 7 6 4 9 9 C 1.55154 * 101.57876 * 322.99216 * 8 7 6 10 10 O 1.42902 * 110.72317 * 277.13471 * 9 8 7 11 11 C 1.50706 * 110.72000 * 154.04349 * 9 8 7 12 12 H 1.08000 * 119.99804 * 359.97438 * 11 9 8 13 13 C 1.37876 * 120.00273 * 180.02562 * 11 9 8 14 14 N 1.31520 * 119.99588 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00319 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46957 * 59.99697 * 15 13 11 17 17 H 1.48500 * 109.47281 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47184 * 300.00164 * 15 13 11 19 19 C 1.47014 * 125.65041 * 179.71856 * 6 4 3 20 20 C 1.47362 * 120.00445 * 180.02562 * 2 1 3 21 21 C 1.39825 * 120.12835 * 359.97438 * 20 2 1 22 22 N 1.31987 * 119.83053 * 180.02562 * 21 20 2 23 23 C 1.32201 * 120.10700 * 359.97438 * 22 21 20 24 24 C 1.38657 * 120.27122 * 359.97438 * 23 22 21 25 25 N 1.31846 * 120.16349 * 359.76965 * 24 23 22 26 26 H 1.09003 * 109.47262 * 174.64141 * 1 2 3 27 27 H 1.09001 * 109.47567 * 54.63915 * 1 2 3 28 28 H 1.09004 * 109.46787 * 294.63488 * 1 2 3 29 29 H 1.07995 * 120.00386 * 185.58910 * 3 2 1 30 30 H 1.09001 * 110.37141 * 322.92699 * 7 6 4 31 31 H 1.09005 * 110.36643 * 85.25159 * 7 6 4 32 32 H 1.08997 * 111.00175 * 81.06518 * 8 7 6 33 33 H 1.08998 * 111.00589 * 204.87789 * 8 7 6 34 34 H 0.96696 * 114.00243 * 180.02562 * 10 9 8 35 35 H 0.97005 * 119.99814 * 180.02562 * 14 13 11 36 36 H 1.09005 * 109.88189 * 298.39445 * 19 6 4 37 37 H 1.08996 * 109.88426 * 59.55908 * 19 6 4 38 38 H 1.07997 * 120.08466 * 359.97438 * 21 20 2 39 39 H 1.07999 * 119.86398 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.91750 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1803 1.1662 0.0000 4 6 1.4522 2.4333 0.1238 5 8 0.2527 2.4283 0.3276 6 7 2.1118 3.6033 0.0118 7 6 3.5575 3.7544 -0.2343 8 6 3.9109 5.1547 0.3261 9 6 2.6460 5.9698 -0.0523 10 8 2.7231 6.4240 -1.4050 11 6 2.4597 7.1323 0.8885 12 1 3.1642 7.2961 1.6906 13 6 1.3893 7.9860 0.7260 14 7 0.5312 7.7862 -0.2504 15 14 1.1580 9.4265 1.8926 16 1 2.3429 10.3186 1.8186 17 1 -0.0579 10.1863 1.5059 18 1 1.0055 8.9202 3.2802 19 6 1.5078 4.9401 0.1086 20 6 2.2439 -1.2761 -0.0006 21 6 1.5475 -2.4887 -0.0006 22 7 2.2135 -3.6282 -0.0006 23 6 3.5355 -3.6237 -0.0011 24 6 4.2304 -2.4238 -0.0022 25 7 3.5759 -1.2793 -0.0073 26 1 -0.3634 -1.0232 -0.0960 27 1 -0.3634 0.5947 -0.8381 28 1 -0.3633 0.4284 0.9342 29 1 3.2564 1.1685 -0.0911 30 1 4.1153 2.9821 0.2954 31 1 3.7671 3.7095 -1.3030 32 1 4.0447 5.1205 1.4072 33 1 4.7974 5.5588 -0.1626 34 1 1.9565 6.9393 -1.6911 35 1 -0.2217 8.3870 -0.3650 36 1 0.7710 5.0723 -0.6838 37 1 1.0339 5.0632 1.0824 38 1 0.4676 -2.4928 0.0003 39 1 4.0765 -4.5585 -0.0015 40 1 5.3103 -2.4268 -0.0030 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326379774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:12 Heat of formation + Delta-G solvation = -13.290493 kcal Electronic energy + Delta-G solvation = -24181.186803 eV Core-core repulsion = 20575.688039 eV Total energy + Delta-G solvation = -3605.498764 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.29091 -39.51862 -37.50018 -35.44004 -34.36831 -34.11081 -32.17497 -30.93266 -30.18482 -28.33419 -27.52840 -25.55462 -24.87052 -24.30985 -22.70010 -20.67930 -19.54879 -18.29528 -17.66519 -17.37025 -17.22888 -16.58615 -15.87553 -15.34239 -15.16663 -14.89124 -14.57526 -14.50980 -14.00274 -13.46245 -13.19860 -12.95875 -12.83428 -12.64669 -12.30856 -12.11088 -11.93718 -11.73195 -11.62038 -11.50092 -11.35671 -11.04838 -10.79653 -10.64415 -10.53439 -10.28082 -10.17445 -9.44940 -9.36207 -9.19074 -8.72558 -8.67581 -8.32631 -7.84309 -6.30682 -4.39306 0.06855 0.77927 1.75921 3.21461 3.27181 3.29068 3.43012 3.50605 3.72435 3.73896 3.94033 4.15378 4.25664 4.50060 4.80619 4.88454 4.96967 5.02917 5.09631 5.25955 5.41195 5.55648 5.72322 5.81479 5.89181 6.00838 6.03653 6.06654 6.19943 6.34019 6.47391 6.49516 6.75947 6.83796 6.96506 6.97759 7.25459 7.35812 7.45924 7.72118 7.98156 8.19995 8.62296 8.70377 9.29621 9.42465 10.77092 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.003032 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.319738 B = 9232.484837 C = 9693.451471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.032 4.032 3 C -0.145 4.145 4 C 0.543 3.457 5 O -0.546 6.546 6 N -0.602 5.602 7 C 0.100 3.900 8 C -0.118 4.118 9 C 0.249 3.751 10 O -0.586 6.586 11 C -0.538 4.538 12 H 0.066 0.934 13 C 0.070 3.930 14 N -0.896 5.896 15 Si 0.905 3.095 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.102 3.898 20 C 0.117 3.883 21 C 0.062 3.938 22 N -0.437 5.437 23 C 0.041 3.959 24 C 0.059 3.941 25 N -0.432 5.432 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.138 0.862 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.386 0.614 35 H 0.272 0.728 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.177 0.823 39 H 0.170 0.830 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.456 -18.220 -0.288 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.035 4.035 3 C -0.167 4.167 4 C 0.333 3.667 5 O -0.427 6.427 6 N -0.334 5.334 7 C -0.023 4.023 8 C -0.156 4.156 9 C 0.208 3.792 10 O -0.397 6.397 11 C -0.576 4.576 12 H 0.085 0.915 13 C -0.133 4.133 14 N -0.535 5.535 15 Si 0.732 3.268 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.020 4.020 20 C -0.021 4.021 21 C -0.098 4.098 22 N -0.151 5.151 23 C -0.119 4.119 24 C -0.103 4.103 25 N -0.147 5.147 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.156 0.844 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.238 0.762 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.194 0.806 39 H 0.188 0.812 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.193 -18.514 -0.249 19.230 hybrid contribution -0.486 1.034 0.559 1.272 sum 4.707 -17.480 0.310 18.105 Atomic orbital electron populations 1.20987 0.89048 1.01007 1.05338 1.20642 0.95946 0.89296 0.97640 1.23179 1.01162 0.91835 1.00557 1.17932 0.86747 0.83286 0.78705 1.90767 1.14355 1.87255 1.50351 1.48692 1.09659 1.06714 1.68326 1.22379 0.81054 0.98582 1.00320 1.22764 0.99571 0.92876 1.00418 1.19481 0.88059 0.89996 0.81666 1.86073 1.49122 1.74718 1.29754 1.21493 1.10762 1.10919 1.14423 0.91538 1.25079 0.94893 0.97850 0.95462 1.69570 1.14504 1.38465 1.31009 0.86439 0.77664 0.81737 0.80946 1.19972 1.21049 1.20017 1.23049 0.98328 0.78853 1.01761 1.20909 0.90201 0.94568 0.96378 1.24016 1.02126 0.87683 0.95936 1.68457 1.08902 1.29477 1.08221 1.23897 0.91113 0.99939 0.96931 1.23823 1.02035 0.88497 0.95933 1.68506 1.07942 1.29869 1.08367 0.92853 0.89640 0.88943 0.84438 0.91751 0.91560 0.90531 0.90436 0.76195 0.91837 0.91653 0.91506 0.80615 0.81250 0.81020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 8.20 36.00 0.30 -1.08 16 2 C -0.03 -0.43 6.05 -102.18 -0.62 -1.05 16 3 C -0.14 -2.25 9.01 -37.45 -0.34 -2.59 16 4 C 0.54 10.56 7.72 -12.86 -0.10 10.46 16 5 O -0.55 -11.86 13.57 5.22 0.07 -11.79 16 6 N -0.60 -12.30 3.33 -172.07 -0.57 -12.88 16 7 C 0.10 1.76 6.55 -2.53 -0.02 1.74 16 8 C -0.12 -2.33 6.23 -24.58 -0.15 -2.49 16 9 C 0.25 5.96 0.86 -89.93 -0.08 5.88 16 10 O -0.59 -14.74 13.07 -35.23 -0.46 -15.20 16 11 C -0.54 -13.93 8.12 -34.44 -0.28 -14.21 16 12 H 0.07 1.69 7.76 -52.49 -0.41 1.28 16 13 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 14 N -0.90 -23.68 10.97 55.43 0.61 -23.07 16 15 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.10 2.43 5.54 -3.07 -0.02 2.42 16 20 C 0.12 1.43 6.70 -82.96 -0.56 0.87 16 21 C 0.06 0.66 10.62 -16.89 -0.18 0.48 16 22 N -0.44 -4.55 10.49 -12.64 -0.13 -4.69 16 23 C 0.04 0.33 11.22 -17.24 -0.19 0.13 16 24 C 0.06 0.50 11.22 -17.39 -0.20 0.31 16 25 N -0.43 -5.15 9.51 -9.72 -0.09 -5.24 16 26 H 0.05 0.49 5.63 -51.93 -0.29 0.20 16 27 H 0.09 1.22 7.41 -51.93 -0.39 0.83 16 28 H 0.09 1.32 7.13 -51.93 -0.37 0.95 16 29 H 0.14 1.98 6.20 -52.49 -0.33 1.66 16 30 H 0.06 0.94 7.08 -51.93 -0.37 0.57 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 34 H 0.39 10.01 6.98 45.56 0.32 10.33 16 35 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.07 1.70 8.07 -51.93 -0.42 1.29 16 37 H 0.07 1.73 7.82 -51.93 -0.41 1.33 16 38 H 0.18 1.46 5.95 -52.49 -0.31 1.15 16 39 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -30.38 333.89 -7.30 -37.68 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -4.21 Total: 12.24 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -2.52 Total: 2.60 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.19 Total: -45.87 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.39 Total: -26.99 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.38 -7.30 -37.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326379774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.392 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds