Wall clock time and date at job start Tue Mar 31 2020 08:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34667 * 120.00102 * 2 1 4 4 C 1.46655 * 119.99639 * 5.59230 * 3 2 1 5 5 O 1.21670 * 120.00264 * 5.54931 * 4 3 2 6 6 N 1.34782 * 120.00090 * 185.54249 * 4 3 2 7 7 C 1.47421 * 125.64454 * 0.02772 * 6 4 3 8 8 C 1.54910 * 104.83199 * 204.08966 * 7 6 4 9 9 C 1.55154 * 101.57876 * 322.99216 * 8 7 6 10 10 O 1.42902 * 110.72317 * 277.13471 * 9 8 7 11 11 C 1.50706 * 110.72000 * 154.04349 * 9 8 7 12 12 H 1.08000 * 119.99804 * 359.97438 * 11 9 8 13 13 C 1.37876 * 120.00273 * 180.02562 * 11 9 8 14 14 N 1.31520 * 119.99588 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00319 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46957 * 59.99697 * 15 13 11 17 17 H 1.48500 * 109.47281 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47184 * 300.00164 * 15 13 11 19 19 C 1.47014 * 125.65041 * 179.71856 * 6 4 3 20 20 C 1.47362 * 120.00445 * 180.02562 * 2 1 3 21 21 C 1.39825 * 120.12835 * 359.97438 * 20 2 1 22 22 N 1.31987 * 119.83053 * 180.02562 * 21 20 2 23 23 C 1.32201 * 120.10700 * 359.97438 * 22 21 20 24 24 C 1.38657 * 120.27122 * 359.97438 * 23 22 21 25 25 N 1.31846 * 120.16349 * 359.76965 * 24 23 22 26 26 H 1.09003 * 109.47262 * 174.64141 * 1 2 3 27 27 H 1.09001 * 109.47567 * 54.63915 * 1 2 3 28 28 H 1.09004 * 109.46787 * 294.63488 * 1 2 3 29 29 H 1.07995 * 120.00386 * 185.58910 * 3 2 1 30 30 H 1.09001 * 110.37141 * 322.92699 * 7 6 4 31 31 H 1.09005 * 110.36643 * 85.25159 * 7 6 4 32 32 H 1.08997 * 111.00175 * 81.06518 * 8 7 6 33 33 H 1.08998 * 111.00589 * 204.87789 * 8 7 6 34 34 H 0.96696 * 114.00243 * 180.02562 * 10 9 8 35 35 H 0.97005 * 119.99814 * 180.02562 * 14 13 11 36 36 H 1.09005 * 109.88189 * 298.39445 * 19 6 4 37 37 H 1.08996 * 109.88426 * 59.55908 * 19 6 4 38 38 H 1.07997 * 120.08466 * 359.97438 * 21 20 2 39 39 H 1.07999 * 119.86398 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.91750 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1803 1.1662 0.0000 4 6 1.4522 2.4333 0.1238 5 8 0.2527 2.4283 0.3276 6 7 2.1118 3.6033 0.0118 7 6 3.5575 3.7544 -0.2343 8 6 3.9109 5.1547 0.3261 9 6 2.6460 5.9698 -0.0523 10 8 2.7231 6.4240 -1.4050 11 6 2.4597 7.1323 0.8885 12 1 3.1642 7.2961 1.6906 13 6 1.3893 7.9860 0.7260 14 7 0.5312 7.7862 -0.2504 15 14 1.1580 9.4265 1.8926 16 1 2.3429 10.3186 1.8186 17 1 -0.0579 10.1863 1.5059 18 1 1.0055 8.9202 3.2802 19 6 1.5078 4.9401 0.1086 20 6 2.2439 -1.2761 -0.0006 21 6 1.5475 -2.4887 -0.0006 22 7 2.2135 -3.6282 -0.0006 23 6 3.5355 -3.6237 -0.0011 24 6 4.2304 -2.4238 -0.0022 25 7 3.5759 -1.2793 -0.0073 26 1 -0.3634 -1.0232 -0.0960 27 1 -0.3634 0.5947 -0.8381 28 1 -0.3633 0.4284 0.9342 29 1 3.2564 1.1685 -0.0911 30 1 4.1153 2.9821 0.2954 31 1 3.7671 3.7095 -1.3030 32 1 4.0447 5.1205 1.4072 33 1 4.7974 5.5588 -0.1626 34 1 1.9565 6.9393 -1.6911 35 1 -0.2217 8.3870 -0.3650 36 1 0.7710 5.0723 -0.6838 37 1 1.0339 5.0632 1.0824 38 1 0.4676 -2.4928 0.0003 39 1 4.0765 -4.5585 -0.0015 40 1 5.3103 -2.4268 -0.0030 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326379774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:11 Heat of formation + Delta-G solvation = -35.550621 kcal Electronic energy + Delta-G solvation = -24182.152074 eV Core-core repulsion = 20575.688039 eV Total energy + Delta-G solvation = -3606.464035 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.06728 -41.06847 -39.15815 -36.54032 -36.07039 -34.98861 -34.17866 -32.07607 -31.56985 -29.84857 -28.97059 -27.08669 -25.90299 -25.28485 -24.19353 -21.94585 -21.32594 -19.57983 -19.19141 -18.56976 -18.23366 -17.80350 -17.31342 -16.78374 -16.50230 -16.18163 -15.94667 -15.80393 -15.21613 -14.92716 -14.76227 -14.66707 -14.01401 -13.94051 -13.65227 -13.49780 -13.39904 -13.21818 -12.85935 -12.74871 -12.58506 -12.42774 -12.41318 -12.32994 -12.28655 -12.06898 -11.20754 -11.18131 -10.80565 -10.63654 -10.30112 -10.10164 -9.80785 -9.41290 -8.27973 -6.43998 -0.81876 0.04968 0.71922 1.42324 1.42717 1.51017 2.07712 2.20128 2.37533 2.78126 2.84060 2.98183 3.25508 3.39632 3.56527 3.80583 3.90681 3.96825 4.10658 4.15157 4.22289 4.33842 4.40725 4.45723 4.62759 4.69170 4.70757 4.77431 4.97140 5.00604 5.11655 5.18101 5.28259 5.35672 5.37081 5.42667 5.52028 5.74383 6.02919 6.24062 6.60446 6.67554 6.72845 7.15240 7.27971 7.37548 8.78143 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.003032 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.319738 B = 9232.484837 C = 9693.451471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.001 4.001 3 C -0.173 4.173 4 C 0.540 3.460 5 O -0.581 6.581 6 N -0.611 5.611 7 C 0.106 3.894 8 C -0.113 4.113 9 C 0.233 3.767 10 O -0.590 6.590 11 C -0.558 4.558 12 H 0.068 0.932 13 C 0.024 3.976 14 N -0.918 5.918 15 Si 0.965 3.035 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.273 1.273 19 C 0.120 3.880 20 C 0.086 3.914 21 C 0.066 3.934 22 N -0.458 5.458 23 C 0.060 3.940 24 C 0.059 3.941 25 N -0.453 5.453 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.152 0.848 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.378 0.622 35 H 0.271 0.729 36 H 0.030 0.970 37 H 0.035 0.965 38 H 0.192 0.808 39 H 0.211 0.789 40 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.523 -20.926 0.179 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.005 4.005 3 C -0.195 4.195 4 C 0.333 3.667 5 O -0.464 6.464 6 N -0.343 5.343 7 C -0.016 4.016 8 C -0.150 4.150 9 C 0.192 3.808 10 O -0.399 6.399 11 C -0.596 4.596 12 H 0.086 0.914 13 C -0.176 4.176 14 N -0.557 5.557 15 Si 0.790 3.210 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.003 4.003 20 C -0.050 4.050 21 C -0.092 4.092 22 N -0.172 5.172 23 C -0.101 4.101 24 C -0.104 4.104 25 N -0.168 5.168 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.169 0.831 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.229 0.771 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.209 0.791 39 H 0.228 0.772 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 7.267 -21.224 0.215 22.435 hybrid contribution -1.091 1.622 0.401 1.995 sum 6.176 -19.602 0.616 20.561 Atomic orbital electron populations 1.20965 0.88910 1.02902 1.03626 1.20871 0.96263 0.89835 0.93503 1.22845 1.01410 0.90106 1.05175 1.18622 0.86580 0.84153 0.77384 1.90740 1.16012 1.87837 1.51856 1.48727 1.10819 1.05651 1.69088 1.22484 0.79570 0.98443 1.01106 1.22759 0.97921 0.93243 1.01122 1.19712 0.90261 0.89975 0.80810 1.86061 1.48661 1.74620 1.30575 1.21834 1.11011 1.11846 1.14954 0.91392 1.25839 0.94671 1.00239 0.96856 1.69680 1.14741 1.39151 1.32161 0.85496 0.77673 0.78851 0.78958 1.19220 1.20878 1.19826 1.22528 0.97788 0.81495 0.98524 1.20690 0.90751 0.93983 0.99562 1.24203 1.02937 0.87204 0.94875 1.68564 1.10234 1.29145 1.09217 1.24643 0.90467 1.01530 0.93430 1.24493 1.03704 0.87619 0.94579 1.68441 1.07911 1.31852 1.08607 0.89054 0.91408 0.90591 0.83093 0.87915 0.91021 0.89800 0.89102 0.77106 0.91920 0.95121 0.94691 0.79119 0.77225 0.77378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.75 8.20 71.23 0.58 -2.16 16 2 C 0.00 -0.03 6.05 -18.28 -0.11 -0.14 16 3 C -0.17 -5.34 9.01 23.65 0.21 -5.12 16 4 C 0.54 21.66 7.72 86.44 0.67 22.33 16 5 O -0.58 -26.61 13.57 -4.25 -0.06 -26.67 16 6 N -0.61 -25.63 3.33 -816.54 -2.72 -28.35 16 7 C 0.11 3.63 6.55 86.86 0.57 4.20 16 8 C -0.11 -4.37 6.23 31.99 0.20 -4.17 16 9 C 0.23 11.45 0.86 -10.35 -0.01 11.44 16 10 O -0.59 -30.51 13.07 -148.98 -1.95 -32.46 16 11 C -0.56 -29.54 8.12 25.60 0.21 -29.33 16 12 H 0.07 3.48 7.76 -2.91 -0.02 3.46 16 13 C 0.02 1.29 5.28 84.65 0.45 1.74 16 14 N -0.92 -50.28 10.97 21.45 0.24 -50.04 16 15 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 16 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 C 0.12 6.06 5.54 86.73 0.48 6.54 16 20 C 0.09 1.93 6.70 41.72 0.28 2.21 16 21 C 0.07 1.23 10.62 85.05 0.90 2.13 16 22 N -0.46 -7.98 10.49 -193.89 -2.03 -10.02 16 23 C 0.06 0.70 11.22 84.74 0.95 1.65 16 24 C 0.06 0.76 11.22 84.79 0.95 1.71 16 25 N -0.45 -9.55 9.51 -184.66 -1.76 -11.31 16 26 H 0.09 1.56 5.63 -2.39 -0.01 1.54 16 27 H 0.07 2.00 7.41 -2.39 -0.02 1.98 16 28 H 0.08 2.24 7.13 -2.38 -0.02 2.22 16 29 H 0.15 4.16 6.20 -2.91 -0.02 4.14 16 30 H 0.10 2.75 7.08 -2.39 -0.02 2.74 16 31 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.08 3.10 8.03 -2.39 -0.02 3.08 16 33 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.38 20.52 6.98 -74.06 -0.52 20.00 16 35 H 0.27 14.24 8.31 -92.70 -0.77 13.46 16 36 H 0.03 1.71 8.07 -2.38 -0.02 1.69 16 37 H 0.03 1.93 7.82 -2.39 -0.02 1.91 16 38 H 0.19 2.67 5.95 -2.91 -0.02 2.66 16 39 H 0.21 0.64 8.06 -2.91 -0.02 0.61 16 40 H 0.21 1.02 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -69.30 333.89 0.65 -68.65 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.57 Total: 32.91 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 6.33 Total: 13.02 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -6.27 Total: -99.71 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -2.01 Total: -59.12 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -69.30 0.65 -68.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326379774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.096 kcal (2) G-P(sol) polarization free energy of solvation -69.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds