Wall clock time and date at job start Tue Mar 31 2020 08:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34658 * 120.00257 * 2 1 4 4 C 1.46652 * 120.00032 * 184.27207 * 3 2 1 5 5 O 1.21665 * 120.00647 * 354.05570 * 4 3 2 6 6 N 1.34780 * 119.99854 * 174.05568 * 4 3 2 7 7 C 1.47027 * 125.64722 * 359.97438 * 6 4 3 8 8 C 1.54324 * 107.26937 * 178.97744 * 7 6 4 9 9 C 1.55159 * 103.10436 * 337.71208 * 8 7 6 10 10 O 1.42896 * 111.00586 * 277.52311 * 9 8 7 11 11 C 1.50697 * 111.00670 * 153.66544 * 9 8 7 12 12 H 1.08011 * 119.99531 * 0.02562 * 11 9 8 13 13 C 1.37873 * 120.00418 * 180.02562 * 11 9 8 14 14 N 1.31515 * 119.99770 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 120.00373 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46940 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47092 * 119.99715 * 15 13 11 18 18 H 1.48499 * 109.47216 * 240.00241 * 15 13 11 19 19 C 1.47426 * 125.64956 * 180.02562 * 6 4 3 20 20 C 1.47376 * 120.00185 * 180.02562 * 2 1 3 21 21 C 1.39814 * 120.13486 * 93.21243 * 20 2 1 22 22 N 1.31987 * 119.82968 * 179.73159 * 21 20 2 23 23 C 1.32204 * 120.10729 * 0.52446 * 22 21 20 24 24 C 1.38653 * 120.26851 * 359.75361 * 23 22 21 25 25 N 1.31848 * 120.16648 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.46781 * 90.00037 * 1 2 3 27 27 H 1.08998 * 109.47181 * 209.99872 * 1 2 3 28 28 H 1.08996 * 109.47069 * 330.00317 * 1 2 3 29 29 H 1.07997 * 119.99627 * 4.27049 * 3 2 1 30 30 H 1.08996 * 109.88165 * 59.55914 * 7 6 4 31 31 H 1.09002 * 109.88159 * 298.38688 * 7 6 4 32 32 H 1.08995 * 110.72346 * 96.17055 * 8 7 6 33 33 H 1.09003 * 110.71707 * 219.26746 * 8 7 6 34 34 H 0.96702 * 113.99662 * 180.02562 * 10 9 8 35 35 H 0.97001 * 120.00157 * 179.97438 * 14 13 11 36 36 H 1.08995 * 110.36623 * 322.92796 * 19 6 4 37 37 H 1.08991 * 110.36839 * 85.14571 * 19 6 4 38 38 H 1.08001 * 120.08293 * 0.02562 * 21 20 2 39 39 H 1.07995 * 119.86141 * 179.72683 * 23 22 21 40 40 H 1.08003 * 119.91577 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1803 1.1661 0.0000 4 6 3.6438 1.1679 -0.0946 5 8 4.2567 0.1173 -0.0641 6 7 4.3099 2.3333 -0.2154 7 6 3.6975 3.6690 -0.2655 8 6 4.8446 4.6949 -0.3814 9 6 6.0664 3.9213 0.1809 10 8 6.0922 3.9726 1.6087 11 6 7.3533 4.4483 -0.3997 12 1 7.3321 5.2626 -1.1090 13 6 8.5577 3.8911 -0.0256 14 7 8.5834 2.8993 0.8377 15 14 10.1529 4.5448 -0.7448 16 1 9.8537 5.6540 -1.6859 17 1 11.0214 5.0453 0.3508 18 1 10.8516 3.4546 -1.4717 19 6 5.7731 2.4798 -0.3202 20 6 2.2439 -1.2763 -0.0006 21 6 2.6535 -1.8497 -1.2081 22 7 3.3178 -2.9902 -1.2013 23 6 3.5863 -3.5945 -0.0565 24 6 3.1770 -3.0326 1.1432 25 7 2.5174 -1.8909 1.1492 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6425 2.1001 0.0696 30 1 3.1286 3.8505 0.6463 31 1 3.0435 3.7446 -1.1343 32 1 5.0098 4.9727 -1.4223 33 1 4.6353 5.5773 0.2233 34 1 6.8386 3.5031 2.0057 35 1 9.4306 2.5070 1.1007 36 1 6.2739 1.7489 0.3145 37 1 6.0927 2.3643 -1.3557 38 1 2.4311 -1.3583 -2.1437 39 1 4.1262 -4.5298 -0.0558 40 1 3.3990 -3.5313 2.0751 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326379776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:15 Heat of formation + Delta-G solvation = -15.249449 kcal Electronic energy + Delta-G solvation = -24802.547922 eV Core-core repulsion = 21196.964211 eV Total energy + Delta-G solvation = -3605.583710 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.84481 -39.37180 -37.36984 -35.29524 -34.28447 -33.74341 -32.17440 -30.77787 -30.14778 -28.47132 -27.51017 -25.29333 -24.49854 -24.23863 -22.71414 -20.35995 -19.60317 -18.52232 -17.32016 -17.31497 -16.89235 -16.71878 -15.69963 -15.16503 -14.96679 -14.77733 -14.50280 -14.24381 -13.53718 -13.40447 -13.21511 -13.09497 -12.98433 -12.85079 -12.65549 -11.99564 -11.83204 -11.63098 -11.50787 -11.41157 -11.09511 -10.98842 -10.80898 -10.62812 -10.49065 -10.21370 -9.71179 -9.46758 -9.42866 -8.79073 -8.76007 -8.69784 -8.38825 -7.78066 -6.31887 -4.41700 0.93057 1.24233 1.37232 3.17541 3.26589 3.29722 3.63545 3.64791 3.83064 4.07274 4.23791 4.43443 4.69071 4.75521 4.86294 4.95718 5.21926 5.24192 5.34300 5.38253 5.39087 5.50763 5.57745 5.63392 5.66175 5.79937 6.00119 6.02544 6.14048 6.32305 6.47177 6.52618 6.69277 6.81698 6.97356 7.22749 7.31305 7.43872 7.71529 7.93957 7.96374 8.20171 8.61516 8.70727 9.28493 9.43332 10.75459 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.004089 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.651328 B = 6846.702601 C = 7768.764575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.015 4.015 3 C -0.169 4.169 4 C 0.545 3.455 5 O -0.547 6.547 6 N -0.600 5.600 7 C 0.104 3.896 8 C -0.119 4.119 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.538 4.538 12 H 0.068 0.932 13 C 0.071 3.929 14 N -0.895 5.895 15 Si 0.904 3.096 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.094 3.906 20 C 0.147 3.853 21 C 0.078 3.922 22 N -0.435 5.435 23 C 0.036 3.964 24 C 0.057 3.943 25 N -0.427 5.427 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.137 0.863 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.386 0.614 35 H 0.271 0.729 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.803 -6.166 -2.115 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.019 4.019 3 C -0.191 4.191 4 C 0.334 3.666 5 O -0.427 6.427 6 N -0.332 5.332 7 C -0.020 4.020 8 C -0.157 4.157 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.576 4.576 12 H 0.086 0.914 13 C -0.132 4.132 14 N -0.534 5.534 15 Si 0.732 3.268 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.028 4.028 20 C 0.007 3.993 21 C -0.083 4.083 22 N -0.149 5.149 23 C -0.123 4.123 24 C -0.103 4.103 25 N -0.142 5.142 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.155 0.845 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.238 0.762 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.177 0.823 39 H 0.181 0.819 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.890 -6.561 -2.085 16.404 hybrid contribution 1.644 0.054 -0.196 1.657 sum -13.246 -6.507 -2.281 14.933 Atomic orbital electron populations 1.20849 0.89360 1.03692 1.02929 1.20612 0.95415 0.90132 0.95740 1.23113 0.94090 0.98020 1.03875 1.17996 0.87496 0.83075 0.77988 1.90774 1.69447 1.30492 1.51990 1.48602 1.09819 1.05059 1.69684 1.22040 0.96765 0.83150 0.99999 1.22637 0.94475 0.97295 1.01285 1.19673 0.91661 0.87994 0.79752 1.86060 1.53678 1.79005 1.20687 1.21538 0.90433 1.18904 1.26748 0.91359 1.25091 0.99795 0.94003 0.94350 1.69580 1.27372 1.23994 1.32468 0.86334 0.82520 0.78939 0.79038 1.19512 1.20681 1.20747 1.23357 0.76302 1.02229 1.00909 1.20500 0.94401 0.93963 0.90420 1.23505 0.94201 0.92345 0.98269 1.68307 1.08716 1.08299 1.29614 1.23666 0.98670 1.00746 0.89176 1.23605 0.94967 0.92249 0.99487 1.68490 1.10523 1.07205 1.28026 0.90090 0.91093 0.90305 0.84509 0.92071 0.92524 0.90446 0.90637 0.76160 0.91910 0.90155 0.92216 0.82300 0.81894 0.81734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.04 36.00 0.36 -0.62 16 2 C -0.02 -0.21 5.68 -102.18 -0.58 -0.79 16 3 C -0.17 -2.50 9.20 -37.45 -0.34 -2.85 16 4 C 0.54 10.87 7.74 -12.86 -0.10 10.77 16 5 O -0.55 -12.68 13.70 5.22 0.07 -12.61 16 6 N -0.60 -12.35 3.33 -171.76 -0.57 -12.92 16 7 C 0.10 1.77 6.07 -3.06 -0.02 1.75 16 8 C -0.12 -2.31 6.11 -24.89 -0.15 -2.47 16 9 C 0.25 6.05 0.90 -89.35 -0.08 5.97 16 10 O -0.58 -15.13 13.19 -35.23 -0.46 -15.59 16 11 C -0.54 -13.95 8.27 -34.44 -0.28 -14.24 16 12 H 0.07 1.73 7.76 -52.48 -0.41 1.32 16 13 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 14 N -0.89 -24.11 10.75 55.43 0.60 -23.51 16 15 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 C 0.09 2.26 5.66 -2.26 -0.01 2.25 16 20 C 0.15 2.31 3.77 -82.96 -0.31 1.99 16 21 C 0.08 1.20 10.03 -16.90 -0.17 1.03 16 22 N -0.44 -6.87 10.49 -12.64 -0.13 -7.00 16 23 C 0.04 0.49 11.22 -17.24 -0.19 0.30 16 24 C 0.06 0.79 11.22 -17.39 -0.20 0.60 16 25 N -0.43 -6.99 10.43 -9.72 -0.10 -7.09 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 28 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 29 H 0.14 1.59 7.38 -52.49 -0.39 1.21 16 30 H 0.06 0.98 8.12 -51.93 -0.42 0.55 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.41 8.01 -51.93 -0.42 0.99 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.39 10.44 6.93 45.56 0.32 10.75 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.08 2.22 7.67 -51.93 -0.40 1.82 16 37 H 0.06 1.48 8.04 -51.93 -0.42 1.06 16 38 H 0.16 2.11 8.06 -52.49 -0.42 1.68 16 39 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.17 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 340.98 15.07 5.14 5.14 Total: -1.00 -32.66 340.98 -7.31 -39.97 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -4.64 Total: 12.83 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -2.18 Total: 5.46 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.21 Total: -50.53 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.39 Total: -28.20 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.66 -7.31 -39.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326379776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.717 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds