Wall clock time and date at job start Tue Mar 31 2020 08:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34658 * 120.00257 * 2 1 4 4 C 1.46652 * 120.00032 * 184.27207 * 3 2 1 5 5 O 1.21665 * 120.00647 * 354.05570 * 4 3 2 6 6 N 1.34780 * 119.99854 * 174.05568 * 4 3 2 7 7 C 1.47027 * 125.64722 * 359.97438 * 6 4 3 8 8 C 1.54324 * 107.26937 * 178.97744 * 7 6 4 9 9 C 1.55159 * 103.10436 * 337.71208 * 8 7 6 10 10 O 1.42896 * 111.00586 * 277.52311 * 9 8 7 11 11 C 1.50697 * 111.00670 * 153.66544 * 9 8 7 12 12 H 1.08011 * 119.99531 * 0.02562 * 11 9 8 13 13 C 1.37873 * 120.00418 * 180.02562 * 11 9 8 14 14 N 1.31515 * 119.99770 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 120.00373 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46940 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47092 * 119.99715 * 15 13 11 18 18 H 1.48499 * 109.47216 * 240.00241 * 15 13 11 19 19 C 1.47426 * 125.64956 * 180.02562 * 6 4 3 20 20 C 1.47376 * 120.00185 * 180.02562 * 2 1 3 21 21 C 1.39814 * 120.13486 * 93.21243 * 20 2 1 22 22 N 1.31987 * 119.82968 * 179.73159 * 21 20 2 23 23 C 1.32204 * 120.10729 * 0.52446 * 22 21 20 24 24 C 1.38653 * 120.26851 * 359.75361 * 23 22 21 25 25 N 1.31848 * 120.16648 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.46781 * 90.00037 * 1 2 3 27 27 H 1.08998 * 109.47181 * 209.99872 * 1 2 3 28 28 H 1.08996 * 109.47069 * 330.00317 * 1 2 3 29 29 H 1.07997 * 119.99627 * 4.27049 * 3 2 1 30 30 H 1.08996 * 109.88165 * 59.55914 * 7 6 4 31 31 H 1.09002 * 109.88159 * 298.38688 * 7 6 4 32 32 H 1.08995 * 110.72346 * 96.17055 * 8 7 6 33 33 H 1.09003 * 110.71707 * 219.26746 * 8 7 6 34 34 H 0.96702 * 113.99662 * 180.02562 * 10 9 8 35 35 H 0.97001 * 120.00157 * 179.97438 * 14 13 11 36 36 H 1.08995 * 110.36623 * 322.92796 * 19 6 4 37 37 H 1.08991 * 110.36839 * 85.14571 * 19 6 4 38 38 H 1.08001 * 120.08293 * 0.02562 * 21 20 2 39 39 H 1.07995 * 119.86141 * 179.72683 * 23 22 21 40 40 H 1.08003 * 119.91577 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1803 1.1661 0.0000 4 6 3.6438 1.1679 -0.0946 5 8 4.2567 0.1173 -0.0641 6 7 4.3099 2.3333 -0.2154 7 6 3.6975 3.6690 -0.2655 8 6 4.8446 4.6949 -0.3814 9 6 6.0664 3.9213 0.1809 10 8 6.0922 3.9726 1.6087 11 6 7.3533 4.4483 -0.3997 12 1 7.3321 5.2626 -1.1090 13 6 8.5577 3.8911 -0.0256 14 7 8.5834 2.8993 0.8377 15 14 10.1529 4.5448 -0.7448 16 1 9.8537 5.6540 -1.6859 17 1 11.0214 5.0453 0.3508 18 1 10.8516 3.4546 -1.4717 19 6 5.7731 2.4798 -0.3202 20 6 2.2439 -1.2763 -0.0006 21 6 2.6535 -1.8497 -1.2081 22 7 3.3178 -2.9902 -1.2013 23 6 3.5863 -3.5945 -0.0565 24 6 3.1770 -3.0326 1.1432 25 7 2.5174 -1.8909 1.1492 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6425 2.1001 0.0696 30 1 3.1286 3.8505 0.6463 31 1 3.0435 3.7446 -1.1343 32 1 5.0098 4.9727 -1.4223 33 1 4.6353 5.5773 0.2233 34 1 6.8386 3.5031 2.0057 35 1 9.4306 2.5070 1.1007 36 1 6.2739 1.7489 0.3145 37 1 6.0927 2.3643 -1.3557 38 1 2.4311 -1.3583 -2.1437 39 1 4.1262 -4.5298 -0.0558 40 1 3.3990 -3.5313 2.0751 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326379776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:14 Heat of formation + Delta-G solvation = -40.220517 kcal Electronic energy + Delta-G solvation = -24803.630748 eV Core-core repulsion = 21196.964211 eV Total energy + Delta-G solvation = -3606.666537 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.97675 -40.90528 -39.01746 -36.46478 -36.05084 -34.86733 -34.19495 -32.13460 -31.50456 -29.89104 -28.90599 -26.94345 -25.74347 -25.36904 -24.24745 -21.70189 -21.33089 -19.79485 -19.21723 -18.47562 -18.34972 -17.80866 -17.22717 -16.89274 -16.60856 -16.26142 -15.82132 -15.56102 -14.94756 -14.77408 -14.66207 -14.43746 -14.17392 -13.99083 -13.81775 -13.53339 -13.35355 -13.21896 -12.90369 -12.79602 -12.57683 -12.53614 -12.33029 -12.21522 -12.14647 -12.10795 -11.28464 -11.12316 -10.68940 -10.53350 -10.36409 -9.92305 -9.90607 -9.41484 -8.30029 -6.47385 -0.16183 0.10934 0.23734 1.38084 1.41163 1.52404 2.13975 2.23195 2.36008 2.72295 2.96572 3.06828 3.39929 3.59035 3.66679 3.78948 3.81050 4.11258 4.19137 4.27848 4.31806 4.36014 4.40633 4.50988 4.55805 4.67728 4.71669 4.81886 4.92651 4.99285 5.08091 5.14879 5.27390 5.34464 5.41564 5.43496 5.53874 5.72813 6.00656 6.33169 6.59613 6.70875 6.82618 7.18501 7.26062 7.34213 8.75820 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.004089 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.651328 B = 6846.702601 C = 7768.764575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.007 3.993 3 C -0.187 4.187 4 C 0.534 3.466 5 O -0.592 6.592 6 N -0.608 5.608 7 C 0.105 3.895 8 C -0.114 4.114 9 C 0.232 3.768 10 O -0.590 6.590 11 C -0.555 4.555 12 H 0.072 0.928 13 C 0.023 3.977 14 N -0.922 5.922 15 Si 0.966 3.034 16 H -0.260 1.260 17 H -0.279 1.279 18 H -0.284 1.284 19 C 0.109 3.891 20 C 0.126 3.874 21 C 0.061 3.939 22 N -0.459 5.459 23 C 0.032 3.968 24 C 0.049 3.951 25 N -0.455 5.455 26 H 0.108 0.892 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.176 0.824 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.376 0.624 35 H 0.270 0.730 36 H 0.032 0.968 37 H 0.042 0.958 38 H 0.172 0.828 39 H 0.198 0.802 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.007 -5.355 -2.727 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.003 3.997 3 C -0.209 4.209 4 C 0.327 3.673 5 O -0.475 6.475 6 N -0.339 5.339 7 C -0.016 4.016 8 C -0.152 4.152 9 C 0.191 3.809 10 O -0.399 6.399 11 C -0.593 4.593 12 H 0.091 0.909 13 C -0.177 4.177 14 N -0.562 5.562 15 Si 0.791 3.209 16 H -0.184 1.184 17 H -0.204 1.204 18 H -0.210 1.210 19 C -0.014 4.014 20 C -0.013 4.013 21 C -0.099 4.099 22 N -0.174 5.174 23 C -0.127 4.127 24 C -0.111 4.111 25 N -0.171 5.171 26 H 0.126 0.874 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.193 0.807 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.226 0.774 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.189 0.811 39 H 0.215 0.785 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -17.145 -5.709 -2.712 18.273 hybrid contribution 2.342 -0.341 0.017 2.367 sum -14.803 -6.050 -2.695 16.217 Atomic orbital electron populations 1.20996 0.85562 1.04881 1.04937 1.21158 0.97712 0.88594 0.92229 1.23033 0.90605 1.00193 1.07025 1.18938 0.89704 0.82040 0.76661 1.90744 1.70959 1.31994 1.53834 1.48666 1.08177 1.06918 1.70167 1.22243 0.96160 0.80320 1.02897 1.22647 0.92960 0.97815 1.01752 1.19956 0.93424 0.88729 0.78779 1.86048 1.53117 1.78807 1.21966 1.21910 0.91594 1.18980 1.26856 0.90948 1.25876 1.02936 0.94160 0.94701 1.69706 1.27844 1.25039 1.33584 0.85376 0.78715 0.78389 0.78390 1.18406 1.20436 1.21009 1.22834 0.78969 1.01095 0.98534 1.20934 0.94902 0.95027 0.90397 1.23762 0.94547 0.92685 0.98950 1.68312 1.09328 1.08884 1.30845 1.24262 0.98154 1.01689 0.88573 1.24205 0.94075 0.91755 1.01040 1.68503 1.11691 1.08373 1.28567 0.87367 0.91014 0.87929 0.80691 0.90352 0.88105 0.89191 0.89572 0.77367 0.92094 0.94978 0.94012 0.81114 0.78520 0.78598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.04 71.23 0.72 -0.76 16 2 C 0.01 0.16 5.68 -18.28 -0.10 0.06 16 3 C -0.19 -5.11 9.20 23.65 0.22 -4.89 16 4 C 0.53 21.26 7.74 86.44 0.67 21.93 16 5 O -0.59 -28.35 13.70 -4.24 -0.06 -28.41 16 6 N -0.61 -24.86 3.33 -815.55 -2.71 -27.58 16 7 C 0.11 3.32 6.07 86.73 0.53 3.84 16 8 C -0.11 -4.23 6.11 31.78 0.19 -4.04 16 9 C 0.23 11.34 0.90 -9.97 -0.01 11.33 16 10 O -0.59 -31.28 13.19 -148.98 -1.96 -33.24 16 11 C -0.56 -29.11 8.27 25.60 0.21 -28.90 16 12 H 0.07 3.64 7.76 -2.90 -0.02 3.61 16 13 C 0.02 1.24 5.30 84.65 0.45 1.69 16 14 N -0.92 -51.56 10.75 21.45 0.23 -51.33 16 15 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 16 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 19 C 0.11 5.48 5.66 87.03 0.49 5.97 16 20 C 0.13 3.90 3.77 41.72 0.16 4.06 16 21 C 0.06 1.88 10.03 85.05 0.85 2.73 16 22 N -0.46 -14.51 10.49 -193.90 -2.03 -16.54 16 23 C 0.03 0.85 11.22 84.74 0.95 1.80 16 24 C 0.05 1.34 11.22 84.79 0.95 2.29 16 25 N -0.46 -14.77 10.43 -184.65 -1.93 -16.70 16 26 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.03 8.11 -2.39 -0.02 1.01 16 28 H 0.10 1.00 8.07 -2.39 -0.02 0.98 16 29 H 0.18 3.30 7.38 -2.91 -0.02 3.28 16 30 H 0.08 2.22 8.12 -2.39 -0.02 2.20 16 31 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.09 3.08 8.01 -2.39 -0.02 3.06 16 33 H 0.09 2.99 8.14 -2.39 -0.02 2.98 16 34 H 0.38 21.25 6.93 -74.06 -0.51 20.74 16 35 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 36 H 0.03 1.88 7.67 -2.39 -0.02 1.86 16 37 H 0.04 2.17 8.04 -2.39 -0.02 2.15 16 38 H 0.17 4.53 8.06 -2.91 -0.02 4.51 16 39 H 0.20 3.57 8.06 -2.91 -0.02 3.54 16 40 H 0.20 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -75.40 340.98 0.39 -75.01 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: 0.55 Total: 37.47 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 6.28 Total: 17.10 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -6.44 Total: -112.15 kcal Atomic # 8 Polarization: -59.63 SS G_CDS: -2.02 Total: -61.65 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -75.40 0.39 -75.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326379776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.791 kcal (2) G-P(sol) polarization free energy of solvation -75.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds