Wall clock time and date at job start Tue Mar 31 2020 08:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34660 * 120.00306 * 2 1 4 4 C 1.46658 * 119.99736 * 7.36226 * 3 2 1 5 5 O 1.21665 * 120.00222 * 5.99012 * 4 3 2 6 6 N 1.34777 * 120.00114 * 185.98897 * 4 3 2 7 7 C 1.47026 * 125.64576 * 0.02562 * 6 4 3 8 8 C 1.54319 * 107.26854 * 181.02252 * 7 6 4 9 9 C 1.55156 * 102.94742 * 22.19345 * 8 7 6 10 10 O 1.42904 * 111.00498 * 82.56720 * 9 8 7 11 11 C 1.50692 * 111.01063 * 206.38562 * 9 8 7 12 12 H 1.08002 * 120.00159 * 0.02562 * 11 9 8 13 13 C 1.37876 * 120.00102 * 179.97438 * 11 9 8 14 14 N 1.31510 * 120.00174 * 0.02562 * 13 11 9 15 15 Si 1.86808 * 119.99961 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.46744 * 90.00161 * 15 13 11 17 17 H 1.48499 * 109.47261 * 210.00321 * 15 13 11 18 18 H 1.48502 * 109.46997 * 330.00391 * 15 13 11 19 19 C 1.47426 * 125.64921 * 179.71480 * 6 4 3 20 20 C 1.47365 * 120.00049 * 180.27143 * 2 1 3 21 21 C 1.39820 * 120.13299 * 359.72873 * 20 2 1 22 22 N 1.31979 * 119.83290 * 180.02562 * 21 20 2 23 23 C 1.32206 * 120.11035 * 359.97438 * 22 21 20 24 24 C 1.38651 * 120.26629 * 359.97438 * 23 22 21 25 25 N 1.31852 * 120.16896 * 359.76137 * 24 23 22 26 26 H 1.08995 * 109.47076 * 275.16569 * 1 2 3 27 27 H 1.09000 * 109.46810 * 35.16988 * 1 2 3 28 28 H 1.09001 * 109.47002 * 155.16157 * 1 2 3 29 29 H 1.08001 * 120.00334 * 187.36635 * 3 2 1 30 30 H 1.08996 * 109.88649 * 300.43941 * 7 6 4 31 31 H 1.08998 * 109.88076 * 61.45352 * 7 6 4 32 32 H 1.08999 * 110.72385 * 140.55867 * 8 7 6 33 33 H 1.09004 * 110.72415 * 263.82768 * 8 7 6 34 34 H 0.96697 * 114.00090 * 180.02562 * 10 9 8 35 35 H 0.97003 * 120.00197 * 179.97438 * 14 13 11 36 36 H 1.08993 * 110.36818 * 274.74823 * 19 6 4 37 37 H 1.08999 * 110.36115 * 37.07331 * 19 6 4 38 38 H 1.08004 * 120.08248 * 0.02562 * 21 20 2 39 39 H 1.07999 * 119.86709 * 179.97438 * 23 22 21 40 40 H 1.07996 * 119.91941 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1803 1.1662 0.0000 4 6 1.4561 2.4310 0.1628 5 8 0.2642 2.4226 0.4065 6 7 2.1110 3.6028 0.0424 7 6 3.5437 3.7577 -0.2494 8 6 3.8467 5.2708 -0.2667 9 6 2.6874 5.8672 0.5745 10 8 2.9676 5.7726 1.9726 11 6 2.4103 7.2942 0.1774 12 1 2.9932 7.7605 -0.6030 13 6 1.4118 8.0042 0.8097 14 7 0.7015 7.4363 1.7597 15 14 1.0687 9.7735 0.3179 16 1 0.0565 9.7978 -0.7683 17 1 0.5532 10.5225 1.4920 18 1 2.3239 10.4064 -0.1608 19 6 1.5081 4.9416 0.1751 20 6 2.2438 -1.2762 -0.0060 21 6 1.5475 -2.4887 -0.0061 22 7 2.2134 -3.6282 -0.0110 23 6 3.5355 -3.6238 -0.0164 24 6 4.2303 -2.4240 -0.0175 25 7 3.5759 -1.2793 -0.0178 26 1 -0.3633 0.0925 1.0234 27 1 -0.3633 0.8401 -0.5919 28 1 -0.3633 -0.9326 -0.4317 29 1 3.2537 1.1700 -0.1199 30 1 4.1347 3.2702 0.5259 31 1 3.7735 3.3201 -1.2208 32 1 4.8089 5.4768 0.2020 33 1 3.8223 5.6573 -1.2856 34 1 2.2711 6.1324 2.5386 35 1 -0.0008 7.9360 2.2048 36 1 1.0779 5.2598 -0.7744 37 1 0.7472 4.9392 0.9555 38 1 0.4675 -2.4928 -0.0021 39 1 4.0764 -4.5585 -0.0200 40 1 5.3102 -2.4269 -0.0215 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326379779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:20 Heat of formation + Delta-G solvation = -12.846190 kcal Electronic energy + Delta-G solvation = -24216.667277 eV Core-core repulsion = 20611.187779 eV Total energy + Delta-G solvation = -3605.479497 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26952 -39.50671 -37.47014 -35.40644 -34.33209 -34.08241 -32.15972 -30.91874 -30.25256 -28.28572 -27.52849 -25.53607 -24.85872 -24.31149 -22.66691 -20.59465 -19.61240 -18.27366 -17.64409 -17.30718 -17.21922 -16.58657 -15.81241 -15.25903 -15.14124 -14.92035 -14.63335 -14.53723 -13.96292 -13.53892 -13.20637 -12.93963 -12.85220 -12.67288 -12.28522 -12.02931 -11.92905 -11.67963 -11.60827 -11.54286 -11.29949 -11.05824 -10.79056 -10.58232 -10.50755 -10.24610 -10.18950 -9.44933 -9.41364 -9.14806 -8.70873 -8.68962 -8.37551 -7.73549 -6.30418 -4.39929 0.08599 0.79794 1.77123 3.19269 3.27195 3.29756 3.44757 3.52820 3.74469 3.76440 3.96062 4.17256 4.25046 4.52122 4.82957 4.91133 4.96992 5.07422 5.12934 5.29425 5.42927 5.55688 5.67828 5.82002 5.86948 6.01383 6.05108 6.08452 6.22871 6.35558 6.50349 6.52406 6.71758 6.84091 6.99203 6.99846 7.24700 7.32964 7.47763 7.73006 7.98094 8.21797 8.62769 8.71564 9.29919 9.45369 10.76825 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.033482 B = 0.003030 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.070639 B = 9238.963780 C = 9758.044513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.032 4.032 3 C -0.143 4.143 4 C 0.544 3.456 5 O -0.545 6.545 6 N -0.600 5.600 7 C 0.103 3.897 8 C -0.118 4.118 9 C 0.249 3.751 10 O -0.584 6.584 11 C -0.538 4.538 12 H 0.067 0.933 13 C 0.070 3.930 14 N -0.895 5.895 15 Si 0.905 3.095 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.093 3.907 20 C 0.117 3.883 21 C 0.063 3.937 22 N -0.437 5.437 23 C 0.040 3.960 24 C 0.059 3.941 25 N -0.432 5.432 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.137 0.863 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.386 0.614 35 H 0.271 0.729 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.176 0.824 39 H 0.170 0.830 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.953 -17.344 -4.319 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.036 4.036 3 C -0.165 4.165 4 C 0.335 3.665 5 O -0.426 6.426 6 N -0.332 5.332 7 C -0.020 4.020 8 C -0.156 4.156 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.576 4.576 12 H 0.085 0.915 13 C -0.133 4.133 14 N -0.534 5.534 15 Si 0.732 3.268 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.029 4.029 20 C -0.021 4.021 21 C -0.097 4.097 22 N -0.151 5.151 23 C -0.119 4.119 24 C -0.103 4.103 25 N -0.147 5.147 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.155 0.845 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.238 0.762 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.193 0.807 39 H 0.187 0.813 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.707 -17.650 -4.279 18.762 hybrid contribution -0.483 1.120 -0.022 1.220 sum 4.224 -16.530 -4.301 17.595 Atomic orbital electron populations 1.21084 0.89102 1.02649 1.04234 1.20642 0.95945 0.89272 0.97697 1.23180 1.01139 0.91891 1.00326 1.17912 0.86619 0.83267 0.78735 1.90747 1.14865 1.87174 1.49861 1.48645 1.10152 1.06767 1.67605 1.22041 0.81892 0.98864 0.99195 1.22635 1.00441 0.91921 1.00640 1.19628 0.87587 0.91983 0.79990 1.86067 1.50006 1.85377 1.17947 1.21502 1.18208 0.96804 1.21074 0.91461 1.25087 0.94831 0.99005 0.94345 1.69565 1.22043 1.37594 1.24211 0.86384 0.78622 0.83602 0.78188 1.20408 1.20973 1.19679 1.23342 0.99460 0.78729 1.01328 1.20934 0.90202 0.94588 0.96345 1.23974 1.02076 0.87671 0.95956 1.68447 1.08907 1.29489 1.08243 1.23890 0.91107 0.99928 0.96983 1.23822 1.02034 0.88502 0.95945 1.68519 1.07954 1.29850 1.08345 0.89934 0.88313 0.92703 0.84524 0.92012 0.92576 0.90638 0.90447 0.76177 0.91865 0.92044 0.89875 0.80719 0.81262 0.81038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 8.12 36.00 0.29 -1.18 16 2 C -0.03 -0.45 6.05 -102.18 -0.62 -1.06 16 3 C -0.14 -2.26 9.05 -37.45 -0.34 -2.60 16 4 C 0.54 10.72 7.64 -12.86 -0.10 10.62 16 5 O -0.55 -11.95 13.58 5.22 0.07 -11.88 16 6 N -0.60 -12.32 3.32 -171.93 -0.57 -12.90 16 7 C 0.10 1.82 6.07 -3.06 -0.02 1.81 16 8 C -0.12 -2.32 6.12 -24.90 -0.15 -2.48 16 9 C 0.25 5.98 0.89 -89.50 -0.08 5.90 16 10 O -0.58 -14.98 13.19 -35.23 -0.46 -15.44 16 11 C -0.54 -13.81 8.25 -34.44 -0.28 -14.09 16 12 H 0.07 1.69 7.76 -52.49 -0.41 1.28 16 13 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 14 N -0.89 -23.67 10.72 55.43 0.59 -23.08 16 15 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 C 0.09 2.20 5.64 -2.41 -0.01 2.19 16 20 C 0.12 1.45 6.70 -82.96 -0.56 0.90 16 21 C 0.06 0.68 10.55 -16.90 -0.18 0.50 16 22 N -0.44 -4.64 10.49 -12.64 -0.13 -4.77 16 23 C 0.04 0.33 11.22 -17.24 -0.19 0.14 16 24 C 0.06 0.52 11.22 -17.39 -0.20 0.32 16 25 N -0.43 -5.27 9.52 -9.72 -0.09 -5.36 16 26 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 27 H 0.10 1.50 6.15 -51.93 -0.32 1.19 16 28 H 0.05 0.52 6.21 -51.93 -0.32 0.20 16 29 H 0.14 2.03 6.77 -52.49 -0.36 1.67 16 30 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.08 1.42 8.01 -51.93 -0.42 1.00 16 34 H 0.39 10.27 6.93 45.56 0.32 10.58 16 35 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.06 1.48 8.04 -51.93 -0.42 1.07 16 37 H 0.08 2.22 7.64 -51.93 -0.40 1.82 16 38 H 0.18 1.48 6.25 -52.48 -0.33 1.15 16 39 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 335.18 15.07 5.05 5.05 Total: -1.00 -30.42 335.18 -7.41 -37.83 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -4.31 Total: 12.76 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -2.53 Total: 2.67 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.20 Total: -46.11 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.39 Total: -27.33 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.42 -7.41 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326379779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.981 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds