Wall clock time and date at job start Tue Mar 31 2020 09:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46788 * 2 1 4 4 C 1.50692 * 109.47417 * 120.00389 * 2 1 3 5 5 H 1.08002 * 120.00385 * 120.00118 * 4 2 1 6 6 C 1.37879 * 120.00214 * 300.00717 * 4 2 1 7 7 N 1.31519 * 119.99827 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00171 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47338 * 59.99635 * 8 6 4 10 10 H 1.48503 * 109.47068 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47252 * 299.99211 * 8 6 4 12 12 N 1.46503 * 109.47196 * 240.00472 * 2 1 3 13 13 C 1.46501 * 120.00037 * 299.99872 * 12 2 1 14 14 C 1.34781 * 119.99843 * 119.99660 * 12 2 1 15 15 O 1.21622 * 120.00027 * 4.57270 * 14 12 2 16 16 C 1.47240 * 119.99799 * 184.57295 * 14 12 2 17 17 C 1.38023 * 126.81392 * 322.44459 * 16 14 12 18 18 N 1.34105 * 107.88020 * 180.24410 * 17 16 14 19 19 C 1.46507 * 125.15554 * 179.74133 * 18 17 16 20 20 N 1.39763 * 109.68972 * 359.74285 * 18 17 16 21 21 C 1.31366 * 109.09111 * 359.97438 * 20 18 17 22 22 C 1.48316 * 126.51753 * 179.97438 * 21 20 18 23 23 C 1.46739 * 127.11503 * 325.02150 * 22 21 20 24 24 C 1.34367 * 106.02054 * 180.02562 * 23 22 21 25 25 O 1.34152 * 109.00051 * 359.97438 * 24 23 22 26 26 C 1.34086 * 110.75965 * 0.02562 * 25 24 23 27 27 H 1.09005 * 109.47119 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47485 * 299.99402 * 1 2 3 29 29 H 1.08998 * 109.47582 * 59.99964 * 1 2 3 30 30 H 0.96995 * 119.99996 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.46987 * 264.76478 * 13 12 2 32 32 H 1.08997 * 109.46743 * 24.77371 * 13 12 2 33 33 H 1.09000 * 109.46879 * 144.77013 * 13 12 2 34 34 H 1.07999 * 126.06366 * 0.02562 * 17 16 14 35 35 H 1.08989 * 109.47628 * 269.97693 * 19 18 17 36 36 H 1.09004 * 109.46773 * 29.98142 * 19 18 17 37 37 H 1.08999 * 109.46810 * 149.97363 * 19 18 17 38 38 H 1.07998 * 126.99113 * 359.73588 * 23 22 21 39 39 H 1.08000 * 125.49237 * 179.97438 * 24 23 22 40 40 H 1.07996 * 125.77326 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 0.9434 0.8299 2.6035 8 14 2.3226 -1.1198 4.0078 9 1 3.8075 -1.1192 4.0076 10 1 1.8279 -0.4197 5.2204 11 1 1.8282 -2.5202 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4282 14 6 2.7932 -0.0354 -2.0834 15 8 3.1556 1.1020 -1.8507 16 6 3.2007 -0.6967 -3.3342 17 6 3.5392 -2.0250 -3.4952 18 7 3.8524 -2.2168 -4.7849 19 6 4.2730 -3.4922 -5.3703 20 7 3.7168 -1.0153 -5.4861 21 6 3.3236 -0.0758 -4.6565 22 6 3.0610 1.3448 -4.9923 23 6 3.7757 2.1695 -5.9733 24 6 3.1939 3.3801 -5.9341 25 8 2.2040 3.3599 -5.0290 26 6 2.1092 2.1517 -4.4552 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.7093 1.1614 3.4845 31 1 2.4614 -2.7355 -1.0539 32 1 0.7358 -2.3245 -0.9065 33 1 1.5328 -2.2626 -2.4969 34 1 3.5532 -2.7761 -2.7192 35 1 5.3579 -3.5787 -5.3120 36 1 3.8129 -4.3135 -4.8207 37 1 3.9609 -3.5335 -6.4139 38 1 4.6042 1.8666 -6.5963 39 1 3.4776 4.2318 -6.5345 40 1 1.3969 1.8681 -3.6946 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548530764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:41 Heat of formation + Delta-G solvation = 46.443671 kcal Electronic energy + Delta-G solvation = -24823.937725 eV Core-core repulsion = 21221.029229 eV Total energy + Delta-G solvation = -3602.908496 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.30911 -42.10520 -40.16198 -37.05045 -35.07197 -34.81421 -33.04820 -32.16186 -30.65336 -30.43177 -27.86611 -27.42886 -27.20832 -24.66871 -23.17623 -22.59168 -21.72380 -20.86377 -20.04447 -18.53913 -18.43270 -17.76327 -17.37832 -16.90596 -16.79473 -16.56860 -16.05654 -15.77937 -15.64345 -15.00674 -14.60261 -14.29954 -14.10114 -13.86287 -13.67837 -13.63323 -13.48133 -13.34177 -13.17975 -12.92301 -12.83683 -12.69495 -12.53096 -12.13347 -12.09660 -11.97273 -11.20932 -11.13606 -10.71431 -10.46180 -10.20507 -9.73840 -9.30819 -9.19968 -8.09695 -6.25985 0.41036 0.64692 1.11991 1.42878 1.44226 1.46984 1.53907 1.79237 2.16412 2.32087 2.38761 2.60258 3.18170 3.31287 3.53683 3.88761 4.03321 4.08512 4.18860 4.45961 4.46498 4.50829 4.55988 4.60336 4.72607 4.74597 4.79918 4.90043 4.93131 5.04468 5.10780 5.13220 5.27992 5.48417 5.51775 5.69365 5.72851 5.91532 6.09852 6.14541 6.21119 6.50136 6.81457 6.90041 7.37913 7.56239 8.94304 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.015115 B = 0.004602 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.057550 B = 6082.476472 C = 7421.922468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.264 3.736 3 H 0.009 0.991 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.595 5.595 13 C 0.080 3.920 14 C 0.575 3.425 15 O -0.596 6.596 16 C -0.304 4.304 17 C 0.119 3.881 18 N -0.358 5.358 19 C 0.086 3.914 20 N -0.301 5.301 21 C 0.176 3.824 22 C -0.142 4.142 23 C -0.207 4.207 24 C -0.027 4.027 25 O -0.188 6.188 26 C 0.009 3.991 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.019 0.981 30 H 0.263 0.737 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.222 0.778 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.167 0.833 39 H 0.252 0.748 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.872 -9.160 -17.737 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.162 3.838 3 H 0.027 0.973 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.324 5.324 13 C -0.062 4.062 14 C 0.364 3.636 15 O -0.478 6.478 16 C -0.319 4.319 17 C -0.031 4.031 18 N -0.138 5.138 19 C -0.053 4.053 20 N -0.123 5.123 21 C 0.009 3.991 22 C -0.145 4.145 23 C -0.227 4.227 24 C -0.092 4.092 25 O -0.083 6.083 26 C -0.062 4.062 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.239 0.761 35 H 0.110 0.890 36 H 0.145 0.855 37 H 0.117 0.883 38 H 0.185 0.815 39 H 0.268 0.732 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 4.148 -8.716 -18.686 21.032 hybrid contribution 0.172 -0.025 2.017 2.024 sum 4.320 -8.742 -16.670 19.312 Atomic orbital electron populations 1.21888 0.97095 1.00173 0.99932 1.18534 0.91502 0.92257 0.81474 0.97275 1.21549 1.31765 1.13050 0.91028 0.91938 1.25727 0.95130 0.95650 1.01978 1.70020 1.37423 1.23914 1.24366 0.85527 0.78299 0.79081 0.78191 1.20455 1.21174 1.18474 1.48063 1.48781 1.13340 1.22255 1.21977 1.01819 0.80752 1.01662 1.17673 0.78062 0.85139 0.82680 1.90712 1.57681 1.21050 1.78405 1.21267 1.22018 0.94891 0.93719 1.23526 0.94971 0.96243 0.88334 1.48528 1.50265 1.09251 1.05738 1.22465 1.02565 0.78513 1.01716 1.77205 1.24547 0.91064 1.19458 1.20904 0.96846 0.91672 0.89683 1.19242 1.01046 0.91223 1.03021 1.22983 1.04068 0.93472 1.02145 1.24758 0.89505 1.00708 0.94269 1.83894 1.47331 1.32298 1.44810 1.23899 1.01472 0.82276 0.98538 0.93263 0.91359 0.96171 0.92752 0.91503 0.90818 0.89992 0.76127 0.88955 0.85541 0.88268 0.81513 0.73187 0.79281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 8.96 71.98 0.64 -5.73 16 2 C 0.26 13.82 2.63 44.24 0.12 13.94 16 3 H 0.01 0.58 6.91 -2.38 -0.02 0.57 16 4 C -0.54 -28.93 8.37 25.60 0.21 -28.72 16 5 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 6 C 0.01 0.80 5.30 84.65 0.45 1.24 16 7 N -0.92 -53.10 11.32 21.45 0.24 -52.85 16 8 Si 0.96 42.82 29.54 68.60 2.03 44.85 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 12 N -0.59 -25.56 2.75 -830.91 -2.29 -27.85 16 13 C 0.08 2.46 8.25 127.77 1.05 3.51 16 14 C 0.58 25.66 7.08 86.61 0.61 26.27 16 15 O -0.60 -32.19 15.11 -4.10 -0.06 -32.25 16 16 C -0.30 -10.84 5.55 -18.78 -0.10 -10.95 16 17 C 0.12 2.98 9.17 84.29 0.77 3.75 16 18 N -0.36 -8.11 3.95 -367.92 -1.45 -9.56 16 19 C 0.09 0.86 11.39 127.77 1.46 2.32 16 20 N -0.30 -9.22 12.50 -44.51 -0.56 -9.78 16 21 C 0.18 6.25 7.33 44.08 0.32 6.57 16 22 C -0.14 -5.02 6.06 -18.93 -0.11 -5.13 16 23 C -0.21 -5.83 11.15 23.61 0.26 -5.57 16 24 C -0.03 -0.65 12.04 66.93 0.81 0.16 16 25 O -0.19 -5.90 10.55 1.04 0.01 -5.89 16 26 C 0.01 0.31 10.76 67.26 0.72 1.03 16 27 H 0.05 2.13 6.66 -2.38 -0.02 2.11 16 28 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.07 1.75 7.34 -2.39 -0.02 1.73 16 32 H 0.07 2.30 6.44 -2.39 -0.02 2.28 16 33 H 0.08 2.03 5.91 -2.39 -0.01 2.01 16 34 H 0.22 3.80 6.30 -2.91 -0.02 3.78 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.13 0.42 8.13 -2.38 -0.02 0.40 16 37 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.17 3.94 8.06 -2.91 -0.02 3.92 16 39 H 0.25 3.14 8.06 -2.91 -0.02 3.12 16 40 H 0.19 7.14 7.75 -2.91 -0.02 7.12 16 Total: -1.00 -80.43 339.09 6.21 -74.22 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 1.07 Total: 16.40 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 7.22 Total: 2.70 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -4.06 Total: -100.04 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.05 Total: -38.13 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -80.43 6.21 -74.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548530764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.668 kcal (2) G-P(sol) polarization free energy of solvation -80.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds