Wall clock time and date at job start Tue Mar 31 2020 09:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47202 * 2 1 4 4 C 1.50703 * 109.47438 * 240.00183 * 2 1 3 5 5 H 1.07995 * 120.00128 * 240.00402 * 4 2 1 6 6 C 1.37878 * 119.99811 * 59.99806 * 4 2 1 7 7 N 1.31520 * 119.99770 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00024 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47104 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46960 * 120.00095 * 8 6 4 11 11 H 1.48502 * 109.47082 * 239.99845 * 8 6 4 12 12 N 1.46501 * 109.47321 * 120.00079 * 2 1 3 13 13 C 1.46501 * 119.99574 * 59.99835 * 12 2 1 14 14 C 1.34773 * 120.00080 * 240.00497 * 12 2 1 15 15 O 1.21623 * 119.99935 * 4.57130 * 14 12 2 16 16 C 1.47246 * 119.99820 * 184.57974 * 14 12 2 17 17 C 1.38024 * 126.81228 * 322.42284 * 16 14 12 18 18 N 1.34107 * 107.88348 * 180.02562 * 17 16 14 19 19 C 1.46497 * 125.15537 * 179.97438 * 18 17 16 20 20 N 1.39765 * 109.68549 * 0.26619 * 18 17 16 21 21 C 1.31371 * 109.09000 * 359.54665 * 20 18 17 22 22 C 1.48318 * 126.51750 * 180.16181 * 21 20 18 23 23 C 1.46740 * 127.11592 * 325.32693 * 22 21 20 24 24 C 1.34354 * 106.02412 * 179.97438 * 23 22 21 25 25 O 1.34163 * 109.00438 * 359.97438 * 24 23 22 26 26 C 1.34082 * 110.75044 * 359.76953 * 25 24 23 27 27 H 1.09000 * 109.47210 * 299.99936 * 1 2 3 28 28 H 1.09001 * 109.46895 * 59.99578 * 1 2 3 29 29 H 1.08991 * 109.46720 * 179.97438 * 1 2 3 30 30 H 0.97006 * 119.99663 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47500 * 264.78566 * 13 12 2 32 32 H 1.09002 * 109.47438 * 24.79187 * 13 12 2 33 33 H 1.09002 * 109.46726 * 144.78739 * 13 12 2 34 34 H 1.08006 * 126.05862 * 359.97438 * 17 16 14 35 35 H 1.09006 * 109.46734 * 90.00360 * 19 18 17 36 36 H 1.09000 * 109.46995 * 209.99671 * 19 18 17 37 37 H 1.08991 * 109.47370 * 330.00500 * 19 18 17 38 38 H 1.08001 * 126.98709 * 359.95482 * 23 22 21 39 39 H 1.08007 * 125.49949 * 180.02562 * 24 23 22 40 40 H 1.07998 * 125.77441 * 180.27829 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6994 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1202 -4.0080 9 1 3.1456 -2.2875 -3.6039 10 1 1.1662 -1.5865 -4.8161 11 1 3.1467 -0.1871 -4.8165 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0356 2.0833 15 8 3.0185 1.1503 1.9348 16 6 3.3669 -0.7558 3.2324 17 6 2.7593 -1.7497 3.9727 18 7 3.6195 -2.1377 4.9256 19 6 3.3583 -3.1758 5.9257 20 7 4.8003 -1.3970 4.8238 21 6 4.6966 -0.5591 3.8174 22 6 5.7264 0.4068 3.3634 23 6 6.6790 1.1445 4.2010 24 6 7.4102 1.8940 3.3592 25 8 6.9899 1.6770 2.1037 26 6 5.9874 0.7868 2.0855 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 0.7096 1.1620 -3.4844 31 1 0.7901 -2.1449 2.0766 32 1 1.4393 -2.5733 0.4756 33 1 2.5008 -2.6051 1.9040 34 1 1.7666 -2.1442 3.8135 35 1 3.6781 -4.1429 5.5376 36 1 3.9113 -2.9494 6.8373 37 1 2.2914 -3.2077 6.1463 38 1 6.7729 1.0953 5.2758 39 1 8.2083 2.5626 3.6466 40 1 5.4728 0.4334 1.2042 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548530767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:44 Heat of formation + Delta-G solvation = 68.593869 kcal Electronic energy + Delta-G solvation = -24882.816936 eV Core-core repulsion = 21280.868945 eV Total energy + Delta-G solvation = -3601.947991 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.10933 -40.90537 -38.53314 -35.26758 -33.93887 -32.94247 -31.93334 -30.60927 -29.50763 -28.85665 -26.70530 -26.08513 -25.20256 -23.22116 -21.96405 -21.22528 -20.47202 -19.48055 -18.61345 -17.27639 -16.65939 -16.31207 -15.92314 -15.66494 -15.39219 -15.15745 -14.70616 -14.23599 -14.18684 -13.73113 -13.19775 -12.86505 -12.84037 -12.63451 -12.60423 -12.41393 -12.19052 -11.90905 -11.62259 -11.38829 -11.05435 -10.86479 -10.79283 -10.66604 -10.22684 -10.17026 -10.02768 -9.18240 -9.07867 -8.98481 -8.51064 -8.40159 -8.03381 -7.54016 -6.06518 -4.14572 1.65199 1.88816 2.26002 2.39317 3.11079 3.26376 3.33022 3.34848 3.37343 3.80576 4.09173 4.38749 4.43500 4.60595 4.83238 4.96125 5.01294 5.20034 5.24561 5.30571 5.44423 5.56491 5.63994 5.74686 5.79781 5.95163 6.07890 6.35987 6.38102 6.46285 6.64035 6.78226 6.85288 6.90501 7.09517 7.34352 7.47542 7.56861 7.70433 7.73855 8.04573 8.21444 8.57525 8.85823 9.14179 9.52516 10.98664 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.005031 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.031437 B = 5564.705407 C = 6877.954199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.065 0.935 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.588 5.588 13 C 0.081 3.919 14 C 0.578 3.422 15 O -0.545 6.545 16 C -0.263 4.263 17 C 0.089 3.911 18 N -0.373 5.373 19 C 0.101 3.899 20 N -0.291 5.291 21 C 0.196 3.804 22 C -0.128 4.128 23 C -0.188 4.188 24 C -0.048 4.048 25 O -0.177 6.177 26 C 0.040 3.960 27 H 0.011 0.989 28 H 0.093 0.907 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.186 0.814 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.149 0.851 39 H 0.202 0.798 40 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.386 -7.039 14.899 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.083 0.917 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.319 5.319 13 C -0.063 4.063 14 C 0.365 3.635 15 O -0.423 6.423 16 C -0.278 4.278 17 C -0.058 4.058 18 N -0.154 5.154 19 C -0.041 4.041 20 N -0.112 5.112 21 C 0.029 3.971 22 C -0.131 4.131 23 C -0.208 4.208 24 C -0.114 4.114 25 O -0.073 6.073 26 C -0.031 4.031 27 H 0.030 0.970 28 H 0.111 0.889 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.203 0.797 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.167 0.833 39 H 0.219 0.781 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.211 -6.728 15.471 17.977 hybrid contribution -0.585 -0.544 -1.148 1.398 sum 5.626 -7.272 14.323 17.020 Atomic orbital electron populations 1.22080 0.98247 0.99293 1.00812 1.18956 0.90896 0.94576 0.79688 0.91730 1.21362 1.31790 1.13015 0.90245 0.92184 1.24887 0.94944 0.94961 0.98919 1.69898 1.36357 1.22557 1.23630 0.86469 0.78598 0.79622 0.82869 1.19831 1.20994 1.20885 1.48118 1.49015 1.11396 1.23369 1.21752 0.98282 0.83866 1.02418 1.17191 0.78950 0.86210 0.81189 1.90754 1.61112 1.14708 1.75767 1.21572 0.96264 1.05199 1.04728 1.23125 0.96788 0.95636 0.90279 1.48026 1.11156 1.30554 1.25644 1.21893 1.02723 0.88560 0.90878 1.77268 1.03615 1.09357 1.20917 1.20754 0.91399 0.93102 0.91878 1.18841 0.99202 1.02181 0.92910 1.22692 0.97658 1.00259 1.00164 1.23783 1.02647 1.03970 0.81046 1.83920 1.42644 1.50258 1.30430 1.24224 0.89187 0.90738 0.98960 0.96991 0.88880 0.95261 0.92748 0.94304 0.89919 0.92709 0.79744 0.90559 0.89274 0.89341 0.83294 0.78123 0.77435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.97 37.16 0.33 -3.12 16 2 C 0.26 6.51 2.63 -69.08 -0.18 6.33 16 3 H 0.06 1.89 6.91 -51.93 -0.36 1.53 16 4 C -0.53 -13.88 7.96 -34.44 -0.27 -14.15 16 5 H 0.06 1.57 7.42 -52.49 -0.39 1.18 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.59 -12.48 2.75 -176.59 -0.49 -12.97 16 13 C 0.08 1.33 7.98 59.85 0.48 1.81 16 14 C 0.58 12.44 7.09 -12.60 -0.09 12.35 16 15 O -0.54 -13.66 15.09 5.26 0.08 -13.58 16 16 C -0.26 -4.74 5.55 -102.95 -0.57 -5.31 16 17 C 0.09 1.22 9.17 -16.64 -0.15 1.07 16 18 N -0.37 -4.82 3.95 -67.64 -0.27 -5.09 16 19 C 0.10 0.73 11.39 59.85 0.68 1.41 16 20 N -0.29 -4.72 12.50 34.58 0.43 -4.29 16 21 C 0.20 3.53 7.33 -80.55 -0.59 2.94 16 22 C -0.13 -2.26 6.06 -103.17 -0.63 -2.88 16 23 C -0.19 -2.75 11.15 -37.52 -0.42 -3.17 16 24 C -0.05 -0.63 12.04 29.36 0.35 -0.28 16 25 O -0.18 -2.85 10.55 6.68 0.07 -2.78 16 26 C 0.04 0.70 10.76 29.87 0.32 1.02 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 29 H 0.03 0.63 7.67 -51.93 -0.40 0.23 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.04 0.53 7.34 -51.93 -0.38 0.15 16 32 H 0.08 1.44 7.10 -51.93 -0.37 1.07 16 33 H 0.05 0.79 5.91 -51.93 -0.31 0.49 16 34 H 0.19 1.93 6.31 -52.48 -0.33 1.59 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.41 8.13 -51.93 -0.42 -0.01 16 38 H 0.15 1.88 8.06 -52.49 -0.42 1.45 16 39 H 0.20 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.21 3.81 7.75 -52.49 -0.41 3.41 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -34.14 339.86 -5.20 -39.34 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.93 Total: 2.97 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -0.83 Total: -0.31 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.31 Total: -46.49 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.15 Total: -16.36 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.14 -5.20 -39.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548530767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.930 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds