Wall clock time and date at job start Tue Mar 31 2020 09:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47202 * 2 1 4 4 C 1.50703 * 109.47438 * 240.00183 * 2 1 3 5 5 H 1.07995 * 120.00128 * 240.00402 * 4 2 1 6 6 C 1.37878 * 119.99811 * 59.99806 * 4 2 1 7 7 N 1.31520 * 119.99770 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00024 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47104 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46960 * 120.00095 * 8 6 4 11 11 H 1.48502 * 109.47082 * 239.99845 * 8 6 4 12 12 N 1.46501 * 109.47321 * 120.00079 * 2 1 3 13 13 C 1.46501 * 119.99574 * 59.99835 * 12 2 1 14 14 C 1.34773 * 120.00080 * 240.00497 * 12 2 1 15 15 O 1.21623 * 119.99935 * 4.57130 * 14 12 2 16 16 C 1.47246 * 119.99820 * 184.57974 * 14 12 2 17 17 C 1.38024 * 126.81228 * 322.42284 * 16 14 12 18 18 N 1.34107 * 107.88348 * 180.02562 * 17 16 14 19 19 C 1.46497 * 125.15537 * 179.97438 * 18 17 16 20 20 N 1.39765 * 109.68549 * 0.26619 * 18 17 16 21 21 C 1.31371 * 109.09000 * 359.54665 * 20 18 17 22 22 C 1.48318 * 126.51750 * 180.16181 * 21 20 18 23 23 C 1.46740 * 127.11592 * 325.32693 * 22 21 20 24 24 C 1.34354 * 106.02412 * 179.97438 * 23 22 21 25 25 O 1.34163 * 109.00438 * 359.97438 * 24 23 22 26 26 C 1.34082 * 110.75044 * 359.76953 * 25 24 23 27 27 H 1.09000 * 109.47210 * 299.99936 * 1 2 3 28 28 H 1.09001 * 109.46895 * 59.99578 * 1 2 3 29 29 H 1.08991 * 109.46720 * 179.97438 * 1 2 3 30 30 H 0.97006 * 119.99663 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47500 * 264.78566 * 13 12 2 32 32 H 1.09002 * 109.47438 * 24.79187 * 13 12 2 33 33 H 1.09002 * 109.46726 * 144.78739 * 13 12 2 34 34 H 1.08006 * 126.05862 * 359.97438 * 17 16 14 35 35 H 1.09006 * 109.46734 * 90.00360 * 19 18 17 36 36 H 1.09000 * 109.46995 * 209.99671 * 19 18 17 37 37 H 1.08991 * 109.47370 * 330.00500 * 19 18 17 38 38 H 1.08001 * 126.98709 * 359.95482 * 23 22 21 39 39 H 1.08007 * 125.49949 * 180.02562 * 24 23 22 40 40 H 1.07998 * 125.77441 * 180.27829 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6994 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1202 -4.0080 9 1 3.1456 -2.2875 -3.6039 10 1 1.1662 -1.5865 -4.8161 11 1 3.1467 -0.1871 -4.8165 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0356 2.0833 15 8 3.0185 1.1503 1.9348 16 6 3.3669 -0.7558 3.2324 17 6 2.7593 -1.7497 3.9727 18 7 3.6195 -2.1377 4.9256 19 6 3.3583 -3.1758 5.9257 20 7 4.8003 -1.3970 4.8238 21 6 4.6966 -0.5591 3.8174 22 6 5.7264 0.4068 3.3634 23 6 6.6790 1.1445 4.2010 24 6 7.4102 1.8940 3.3592 25 8 6.9899 1.6770 2.1037 26 6 5.9874 0.7868 2.0855 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 0.7096 1.1620 -3.4844 31 1 0.7901 -2.1449 2.0766 32 1 1.4393 -2.5733 0.4756 33 1 2.5008 -2.6051 1.9040 34 1 1.7666 -2.1442 3.8135 35 1 3.6781 -4.1429 5.5376 36 1 3.9113 -2.9494 6.8373 37 1 2.2914 -3.2077 6.1463 38 1 6.7729 1.0953 5.2758 39 1 8.2083 2.5626 3.6466 40 1 5.4728 0.4334 1.2042 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548530767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:43 Heat of formation + Delta-G solvation = 45.477282 kcal Electronic energy + Delta-G solvation = -24883.819346 eV Core-core repulsion = 21280.868945 eV Total energy + Delta-G solvation = -3602.950402 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.31416 -42.09912 -40.15933 -37.04503 -35.07163 -34.81959 -33.04933 -32.15854 -30.65068 -30.43694 -27.85469 -27.38157 -27.24418 -24.66213 -23.16376 -22.62752 -21.74021 -20.82905 -20.05358 -18.51856 -18.44558 -17.82247 -17.38450 -16.90902 -16.79355 -16.50944 -16.01888 -15.79994 -15.65184 -14.95412 -14.70655 -14.19202 -14.06490 -13.83459 -13.73387 -13.63334 -13.46501 -13.37536 -13.15737 -12.98460 -12.77267 -12.70085 -12.54941 -12.16472 -12.08919 -11.99354 -11.19126 -11.14052 -10.71562 -10.47697 -10.20368 -9.73400 -9.31472 -9.18700 -8.11517 -6.27527 0.40767 0.65975 1.11883 1.42026 1.43117 1.44988 1.55163 1.79592 2.16510 2.24724 2.45731 2.60935 3.16744 3.31495 3.53477 3.88862 4.03698 4.08925 4.19335 4.47473 4.48084 4.49931 4.55588 4.60121 4.72775 4.75211 4.83051 4.90283 4.95593 5.04835 5.12530 5.12982 5.28097 5.48865 5.52821 5.67725 5.72194 5.93031 6.10253 6.14634 6.20703 6.50437 6.80884 6.90132 7.36932 7.55877 8.92953 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.005031 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.031437 B = 5564.705407 C = 6877.954199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.264 3.736 3 H 0.009 0.991 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.962 3.038 9 H -0.266 1.266 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.594 5.594 13 C 0.077 3.923 14 C 0.576 3.424 15 O -0.597 6.597 16 C -0.305 4.305 17 C 0.120 3.880 18 N -0.359 5.359 19 C 0.086 3.914 20 N -0.302 5.302 21 C 0.175 3.825 22 C -0.141 4.141 23 C -0.205 4.205 24 C -0.028 4.028 25 O -0.189 6.189 26 C 0.008 3.992 27 H 0.019 0.981 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.264 0.736 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.226 0.774 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.125 0.875 38 H 0.170 0.830 39 H 0.253 0.747 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 -9.650 16.935 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.162 3.838 3 H 0.027 0.973 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.787 3.213 9 H -0.190 1.190 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.324 5.324 13 C -0.065 4.065 14 C 0.365 3.635 15 O -0.479 6.479 16 C -0.320 4.320 17 C -0.029 4.029 18 N -0.138 5.138 19 C -0.052 4.052 20 N -0.123 5.123 21 C 0.008 3.992 22 C -0.145 4.145 23 C -0.225 4.225 24 C -0.093 4.093 25 O -0.085 6.085 26 C -0.063 4.063 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.242 0.758 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.143 0.857 38 H 0.187 0.813 39 H 0.269 0.731 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.225 -9.404 17.551 20.862 hybrid contribution -0.572 0.223 -1.628 1.740 sum 5.653 -9.181 15.922 19.229 Atomic orbital electron populations 1.21860 0.97020 1.00197 0.99852 1.18541 0.91717 0.92202 0.81317 0.97290 1.21581 1.31689 1.12945 0.91021 0.92168 1.25691 0.95106 0.95608 1.01864 1.70039 1.37396 1.23862 1.24270 0.85451 0.78203 0.78494 0.79117 1.18999 1.19973 1.21301 1.48059 1.49067 1.13191 1.22081 1.22020 1.00646 0.80895 1.02976 1.17673 0.78160 0.85782 0.81896 1.90707 1.62734 1.17223 1.77267 1.21278 0.97389 1.07959 1.05367 1.23544 0.97574 0.93248 0.88579 1.48533 1.09672 1.29997 1.25595 1.22465 1.05397 0.87577 0.89805 1.77206 1.05389 1.09532 1.20218 1.20900 0.91721 0.93967 0.92635 1.19247 0.99581 1.02293 0.93361 1.22977 0.97598 1.00670 1.01208 1.24782 1.02271 1.02868 0.79423 1.83899 1.42349 1.50003 1.32236 1.23878 0.90869 0.92768 0.98765 0.96210 0.91524 0.93194 0.92711 0.90499 0.90947 0.90522 0.75757 0.88481 0.88527 0.85714 0.81294 0.73133 0.79742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.28 8.97 71.98 0.65 -5.63 16 2 C 0.26 13.81 2.63 44.25 0.12 13.93 16 3 H 0.01 0.57 6.91 -2.38 -0.02 0.56 16 4 C -0.53 -28.90 7.96 25.60 0.20 -28.70 16 5 H 0.06 3.18 7.42 -2.91 -0.02 3.16 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.92 -52.89 11.32 21.45 0.24 -52.65 16 8 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 12 N -0.59 -25.55 2.75 -830.87 -2.29 -27.84 16 13 C 0.08 2.36 7.98 127.77 1.02 3.38 16 14 C 0.58 25.70 7.09 86.61 0.61 26.31 16 15 O -0.60 -32.16 15.09 -4.10 -0.06 -32.22 16 16 C -0.30 -10.92 5.55 -18.78 -0.10 -11.02 16 17 C 0.12 2.93 9.17 84.29 0.77 3.71 16 18 N -0.36 -8.05 3.95 -367.92 -1.45 -9.50 16 19 C 0.09 0.83 11.39 127.77 1.46 2.29 16 20 N -0.30 -9.35 12.50 -44.51 -0.56 -9.91 16 21 C 0.17 6.33 7.33 44.08 0.32 6.65 16 22 C -0.14 -5.18 6.06 -18.93 -0.11 -5.29 16 23 C -0.21 -5.92 11.15 23.61 0.26 -5.66 16 24 C -0.03 -0.70 12.04 66.93 0.81 0.10 16 25 O -0.19 -6.32 10.55 0.98 0.01 -6.31 16 26 C 0.01 0.30 10.76 67.26 0.72 1.02 16 27 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 29 H 0.05 2.13 7.67 -2.39 -0.02 2.11 16 30 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 31 H 0.08 1.78 7.34 -2.39 -0.02 1.76 16 32 H 0.07 2.39 7.10 -2.39 -0.02 2.37 16 33 H 0.08 2.01 5.91 -2.39 -0.01 1.99 16 34 H 0.23 3.48 6.31 -2.91 -0.02 3.46 16 35 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.12 0.39 8.13 -2.39 -0.02 0.37 16 38 H 0.17 4.04 8.06 -2.91 -0.02 4.01 16 39 H 0.25 3.37 8.06 -2.91 -0.02 3.35 16 40 H 0.19 7.70 7.75 -2.91 -0.02 7.68 16 Total: -1.00 -80.78 339.86 6.16 -74.62 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 1.07 Total: 16.23 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 7.17 Total: 2.45 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -4.05 Total: -99.90 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -0.05 Total: -38.53 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -80.78 6.16 -74.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548530767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.102 kcal (2) G-P(sol) polarization free energy of solvation -80.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds