Wall clock time and date at job start Tue Mar 31 2020 08:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47121 * 60.00002 * 9 7 5 11 11 H 1.48503 * 109.47160 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47085 * 299.99898 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46497 * 109.46926 * 65.00537 * 13 2 1 15 15 C 1.38989 * 120.00408 * 179.97438 * 14 13 2 16 16 C 1.40890 * 120.45648 * 359.97438 * 15 14 13 17 17 C 1.34895 * 120.21307 * 179.97438 * 16 15 14 18 18 N 1.36337 * 120.97325 * 0.02562 * 17 16 15 19 19 N 1.40069 * 131.79522 * 180.02562 * 18 17 16 20 20 C 1.30586 * 109.72405 * 180.02562 * 19 18 17 21 21 C 1.40776 * 108.75487 * 359.97438 * 20 19 18 22 22 C 1.46164 * 126.62373 * 180.02562 * 21 20 19 23 23 O 1.21687 * 119.99900 * 179.97438 * 22 21 20 24 24 O 1.34932 * 120.00287 * 359.97438 * 22 21 20 25 25 C 1.36647 * 120.30767 * 359.97438 * 18 17 16 26 26 C 1.38370 * 120.46411 * 179.71936 * 15 14 13 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 32 32 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 34 34 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 35 35 H 0.97005 * 120.00366 * 359.97438 * 14 13 2 36 36 H 1.08006 * 119.88972 * 359.97438 * 16 15 14 37 37 H 1.08002 * 119.50974 * 180.02562 * 17 16 15 38 38 H 1.08001 * 125.62103 * 180.02562 * 20 19 18 39 39 H 0.96697 * 114.00051 * 179.97438 * 24 22 21 40 40 H 1.08004 * 120.46797 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.0195 0.6701 5.3095 11 1 1.9943 -0.1367 6.4621 12 1 2.0917 1.9238 5.1865 13 6 2.0401 -0.7213 -1.2492 14 7 1.6526 0.0353 -2.4423 15 6 2.0073 -0.4271 -3.7041 16 6 2.7400 -1.6220 -3.8469 17 6 3.0812 -2.0665 -5.0739 18 7 2.7279 -1.3745 -6.1943 19 7 2.9562 -1.6204 -7.5542 20 6 2.4221 -0.6677 -8.2700 21 6 1.8104 0.2595 -7.4052 22 6 1.0975 1.4750 -7.7934 23 8 0.6117 2.1942 -6.9403 24 8 0.9779 1.7998 -9.0976 25 6 2.0173 -0.2120 -6.0912 26 6 1.6414 0.2769 -4.8377 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 2.9235 -1.8416 4.7319 33 1 3.1264 -0.7995 -1.2055 34 1 1.6055 -1.7198 -1.2951 35 1 1.1484 0.8591 -2.3518 36 1 3.0293 -2.1839 -2.9711 37 1 3.6426 -2.9842 -5.1702 38 1 2.4452 -0.6023 -9.3478 39 1 0.4904 2.6198 -9.2556 40 1 1.0757 1.1932 -4.7545 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573540155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:14 Heat of formation + Delta-G solvation = -7.080549 kcal Electronic energy + Delta-G solvation = -23368.255891 eV Core-core repulsion = 19763.026411 eV Total energy + Delta-G solvation = -3605.229480 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.19814 -39.73049 -38.58225 -36.40295 -35.91770 -34.32441 -32.63566 -31.81183 -30.32791 -28.88112 -27.04236 -26.08713 -24.25739 -23.65550 -22.87704 -22.07756 -20.55607 -19.61828 -18.32571 -17.47902 -17.30653 -16.70280 -16.30648 -16.03868 -15.97943 -15.17544 -14.90395 -14.76049 -14.57216 -14.46882 -13.73193 -13.50330 -13.23281 -12.99959 -12.77634 -12.40275 -12.09023 -11.93281 -11.66289 -11.54570 -11.07247 -11.04302 -11.00413 -10.78839 -10.56108 -10.51421 -10.37606 -10.07940 -9.88022 -9.46740 -9.20035 -8.60972 -8.46999 -7.40684 -6.11974 -4.14357 0.61212 0.93532 1.90654 1.98840 3.00409 3.18607 3.25717 3.27288 3.31065 3.33252 3.43742 4.12709 4.36031 4.42023 4.61068 4.83713 4.97720 5.06228 5.23848 5.27148 5.34580 5.41295 5.57490 5.70031 5.74058 5.84970 5.96629 6.08215 6.18243 6.21745 6.29085 6.46085 6.63396 6.67968 6.82658 6.88071 7.03745 7.33652 7.46256 7.48154 7.59754 7.85456 8.01237 8.26987 8.90747 9.50263 10.99277 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.028741 B = 0.002493 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.985437 B =11229.614376 C =12056.136136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 H 0.065 0.935 4 C 0.031 3.969 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.113 3.887 14 N -0.709 5.709 15 C 0.280 3.720 16 C -0.204 4.204 17 C 0.156 3.844 18 N -0.295 5.295 19 N -0.336 5.336 20 C 0.151 3.849 21 C -0.354 4.354 22 C 0.560 3.440 23 O -0.538 6.538 24 O -0.512 6.512 25 C 0.228 3.772 26 C -0.245 4.245 27 H 0.031 0.969 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.020 0.980 31 H 0.018 0.982 32 H 0.262 0.738 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.409 0.591 36 H 0.165 0.835 37 H 0.177 0.823 38 H 0.199 0.801 39 H 0.405 0.595 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 0.599 -21.444 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 H 0.084 0.916 4 C -0.006 4.006 5 C -0.558 4.558 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.009 4.009 14 N -0.332 5.332 15 C 0.163 3.837 16 C -0.228 4.228 17 C 0.029 3.971 18 N -0.060 5.060 19 N -0.154 5.154 20 C -0.033 4.033 21 C -0.366 4.366 22 C 0.407 3.593 23 O -0.430 6.430 24 O -0.322 6.322 25 C 0.109 3.891 26 C -0.272 4.272 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.245 0.755 36 H 0.182 0.818 37 H 0.194 0.806 38 H 0.216 0.784 39 H 0.262 0.738 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.271 -0.967 -20.953 20.977 hybrid contribution -1.157 2.018 0.906 2.496 sum -0.885 1.051 -20.047 20.094 Atomic orbital electron populations 1.21754 0.95656 1.01294 1.00518 1.21477 0.95865 0.99997 0.94248 0.91621 1.19077 0.96289 0.95566 0.89710 1.21123 1.35312 1.08487 0.90857 0.92553 1.25001 0.95116 0.95057 0.99174 1.69939 1.38594 1.21067 1.23769 0.86663 0.78934 0.80115 0.82345 1.20225 1.21268 1.20228 1.21939 0.99826 0.95539 0.83634 1.45178 1.57787 1.27649 1.02548 1.18079 0.88565 0.90717 0.86308 1.20722 1.06070 0.98845 0.97202 1.21349 0.96844 0.96887 0.82066 1.45934 1.37048 1.16818 1.06205 1.77473 1.29766 1.25294 0.82889 1.24064 0.90023 0.89000 1.00235 1.18301 1.24355 1.03276 0.90702 1.19257 0.76351 0.83800 0.79852 1.90896 1.48198 1.52479 1.51418 1.84976 1.72853 1.46550 1.27868 1.18741 0.90434 0.85841 0.94075 1.20092 1.13808 1.06006 0.87315 0.95004 0.93309 0.91464 0.96210 0.96363 0.92843 0.91495 0.91575 0.75487 0.81805 0.80632 0.78417 0.73824 0.82725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.88 37.16 0.33 -1.86 16 2 C -0.10 -1.66 2.37 -90.62 -0.22 -1.87 16 3 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 4 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 5 C -0.52 -13.46 8.41 -34.44 -0.29 -13.75 16 6 H 0.06 1.42 7.06 -52.48 -0.37 1.05 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 9 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.11 1.53 4.32 -4.04 -0.02 1.51 16 14 N -0.71 -8.44 5.44 -58.42 -0.32 -8.76 16 15 C 0.28 3.30 6.68 -83.56 -0.56 2.74 16 16 C -0.20 -2.01 9.25 -39.77 -0.37 -2.38 16 17 C 0.16 1.51 11.15 -16.74 -0.19 1.33 16 18 N -0.29 -3.68 3.85 -10.60 -0.04 -3.72 16 19 N -0.34 -4.23 12.56 30.77 0.39 -3.84 16 20 C 0.15 1.70 11.79 -17.12 -0.20 1.50 16 21 C -0.35 -4.66 6.17 -104.66 -0.65 -5.31 16 22 C 0.56 7.20 8.26 33.91 0.28 7.48 16 23 O -0.54 -8.34 16.43 -19.41 -0.32 -8.66 16 24 O -0.51 -4.69 13.39 -41.13 -0.55 -5.24 16 25 C 0.23 3.11 6.75 -84.08 -0.57 2.54 16 26 C -0.24 -3.19 9.63 -38.99 -0.38 -3.57 16 27 H 0.03 0.43 7.18 -51.93 -0.37 0.06 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.21 6.95 -51.93 -0.36 0.85 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.07 0.89 7.97 -51.93 -0.41 0.47 16 34 H 0.07 0.86 7.97 -51.93 -0.41 0.45 16 35 H 0.41 4.66 7.67 -40.82 -0.31 4.35 16 36 H 0.16 1.34 6.81 -52.48 -0.36 0.98 16 37 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.41 1.99 8.98 45.56 0.41 2.40 16 40 H 0.16 2.10 7.11 -52.48 -0.37 1.73 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -32.50 344.06 -7.22 -39.72 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.24 Total: 3.91 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -3.04 Total: -9.58 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.76 Total: -41.01 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.87 Total: -13.90 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.50 -7.22 -39.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573540155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.635 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds