Wall clock time and date at job start Tue Mar 31 2020 08:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47121 * 60.00002 * 9 7 5 11 11 H 1.48503 * 109.47160 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47085 * 299.99898 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46497 * 109.46926 * 65.00537 * 13 2 1 15 15 C 1.38989 * 120.00408 * 179.97438 * 14 13 2 16 16 C 1.40890 * 120.45648 * 359.97438 * 15 14 13 17 17 C 1.34895 * 120.21307 * 179.97438 * 16 15 14 18 18 N 1.36337 * 120.97325 * 0.02562 * 17 16 15 19 19 N 1.40069 * 131.79522 * 180.02562 * 18 17 16 20 20 C 1.30586 * 109.72405 * 180.02562 * 19 18 17 21 21 C 1.40776 * 108.75487 * 359.97438 * 20 19 18 22 22 C 1.46164 * 126.62373 * 180.02562 * 21 20 19 23 23 O 1.21687 * 119.99900 * 179.97438 * 22 21 20 24 24 O 1.34932 * 120.00287 * 359.97438 * 22 21 20 25 25 C 1.36647 * 120.30767 * 359.97438 * 18 17 16 26 26 C 1.38370 * 120.46411 * 179.71936 * 15 14 13 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 32 32 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 34 34 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 35 35 H 0.97005 * 120.00366 * 359.97438 * 14 13 2 36 36 H 1.08006 * 119.88972 * 359.97438 * 16 15 14 37 37 H 1.08002 * 119.50974 * 180.02562 * 17 16 15 38 38 H 1.08001 * 125.62103 * 180.02562 * 20 19 18 39 39 H 0.96697 * 114.00051 * 179.97438 * 24 22 21 40 40 H 1.08004 * 120.46797 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.0195 0.6701 5.3095 11 1 1.9943 -0.1367 6.4621 12 1 2.0917 1.9238 5.1865 13 6 2.0401 -0.7213 -1.2492 14 7 1.6526 0.0353 -2.4423 15 6 2.0073 -0.4271 -3.7041 16 6 2.7400 -1.6220 -3.8469 17 6 3.0812 -2.0665 -5.0739 18 7 2.7279 -1.3745 -6.1943 19 7 2.9562 -1.6204 -7.5542 20 6 2.4221 -0.6677 -8.2700 21 6 1.8104 0.2595 -7.4052 22 6 1.0975 1.4750 -7.7934 23 8 0.6117 2.1942 -6.9403 24 8 0.9779 1.7998 -9.0976 25 6 2.0173 -0.2120 -6.0912 26 6 1.6414 0.2769 -4.8377 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 2.9235 -1.8416 4.7319 33 1 3.1264 -0.7995 -1.2055 34 1 1.6055 -1.7198 -1.2951 35 1 1.1484 0.8591 -2.3518 36 1 3.0293 -2.1839 -2.9711 37 1 3.6426 -2.9842 -5.1702 38 1 2.4452 -0.6023 -9.3478 39 1 0.4904 2.6198 -9.2556 40 1 1.0757 1.1932 -4.7545 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573540155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:13 Heat of formation + Delta-G solvation = -28.141339 kcal Electronic energy + Delta-G solvation = -23369.169155 eV Core-core repulsion = 19763.026411 eV Total energy + Delta-G solvation = -3606.142745 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.08417 -40.65210 -39.57863 -37.59698 -36.81091 -35.61373 -34.21856 -32.99492 -31.23625 -29.94972 -28.72914 -27.27157 -25.35833 -24.77113 -24.19323 -23.00114 -21.47159 -21.02161 -19.24288 -18.63444 -18.30725 -18.19192 -17.33547 -16.96428 -16.95454 -16.49265 -16.16846 -15.96060 -15.75474 -15.43618 -14.74804 -14.48068 -14.39435 -14.25024 -14.14168 -13.75812 -13.35922 -13.08052 -12.97614 -12.78513 -12.62830 -12.44736 -12.26532 -12.08028 -11.96047 -11.85228 -11.53578 -11.36687 -11.17510 -11.05279 -10.86480 -10.51942 -9.49192 -8.37116 -8.17768 -6.25426 -0.24924 0.03259 1.00666 1.15771 1.41933 1.42355 1.50028 2.11340 2.17849 2.43074 2.46155 2.50814 3.17109 3.35544 3.57980 3.75681 3.92950 4.00480 4.15081 4.16795 4.29571 4.38742 4.56456 4.68404 4.75461 4.79897 4.89258 4.94436 5.00011 5.19910 5.24387 5.31207 5.45832 5.47299 5.53642 5.67664 5.77803 5.81308 5.88167 6.01878 6.29517 6.44954 6.51435 6.90359 7.16736 7.42868 8.93537 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.028741 B = 0.002493 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.985437 B =11229.614376 C =12056.136136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 H 0.063 0.937 4 C 0.035 3.965 5 C -0.530 4.530 6 H 0.059 0.941 7 C 0.002 3.998 8 N -0.931 5.931 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.270 1.270 13 C 0.127 3.873 14 N -0.706 5.706 15 C 0.284 3.716 16 C -0.206 4.206 17 C 0.162 3.838 18 N -0.302 5.302 19 N -0.350 5.350 20 C 0.160 3.840 21 C -0.378 4.378 22 C 0.562 3.438 23 O -0.574 6.574 24 O -0.500 6.500 25 C 0.209 3.791 26 C -0.259 4.259 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.000 1.000 31 H -0.003 1.003 32 H 0.262 0.738 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.411 0.589 36 H 0.185 0.815 37 H 0.212 0.788 38 H 0.231 0.769 39 H 0.424 0.576 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.679 0.508 -22.609 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.106 4.106 3 H 0.081 0.919 4 C -0.003 4.003 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.195 1.195 13 C 0.004 3.996 14 N -0.329 5.329 15 C 0.167 3.833 16 C -0.230 4.230 17 C 0.035 3.965 18 N -0.067 5.067 19 N -0.168 5.168 20 C -0.024 4.024 21 C -0.391 4.391 22 C 0.411 3.589 23 O -0.468 6.468 24 O -0.311 6.311 25 C 0.089 3.911 26 C -0.287 4.287 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.018 0.982 31 H 0.016 0.984 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.248 0.752 36 H 0.202 0.798 37 H 0.228 0.772 38 H 0.248 0.752 39 H 0.284 0.716 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.241 -1.038 -22.158 22.183 hybrid contribution -1.143 2.043 1.191 2.627 sum -0.902 1.005 -20.967 21.010 Atomic orbital electron populations 1.21682 0.94814 1.01293 1.00919 1.21224 0.96454 0.99417 0.93516 0.91880 1.18954 0.94876 0.94846 0.91632 1.21600 1.34484 1.08643 0.92136 0.92232 1.25828 0.95360 0.96017 1.02343 1.70059 1.40113 1.22687 1.24311 0.85681 0.78842 0.78873 0.78745 1.19468 1.21247 1.19519 1.21641 1.00018 0.95398 0.82530 1.44985 1.58050 1.27688 1.02188 1.18162 0.88387 0.91163 0.85562 1.20962 1.05670 0.98232 0.98135 1.21991 0.95887 0.97416 0.81232 1.46175 1.37049 1.16723 1.06770 1.77424 1.30372 1.25938 0.83094 1.24561 0.88584 0.87766 1.01501 1.18599 1.25248 1.04026 0.91202 1.19304 0.75696 0.83431 0.80444 1.90876 1.49805 1.53585 1.52581 1.84927 1.72791 1.47732 1.25690 1.18968 0.91006 0.86626 0.94475 1.20000 1.14711 1.06116 0.87851 0.92045 0.93493 0.93582 0.98200 0.98433 0.92954 0.91000 0.90646 0.75209 0.79775 0.77167 0.75246 0.71623 0.83984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 8.88 71.98 0.64 -3.43 16 2 C -0.09 -2.92 2.37 -10.79 -0.03 -2.94 16 3 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.03 1.59 4.45 29.85 0.13 1.72 16 5 C -0.53 -27.64 8.41 25.60 0.22 -27.43 16 6 H 0.06 2.99 7.06 -2.91 -0.02 2.97 16 7 C 0.00 0.13 5.46 84.65 0.46 0.59 16 8 N -0.93 -53.69 13.29 21.44 0.28 -53.40 16 9 Si 0.95 42.46 29.54 68.60 2.03 44.49 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 13 C 0.13 3.23 4.32 86.38 0.37 3.60 16 14 N -0.71 -15.76 5.44 -338.75 -1.84 -17.60 16 15 C 0.28 6.31 6.68 38.69 0.26 6.57 16 16 C -0.21 -3.61 9.25 22.15 0.20 -3.40 16 17 C 0.16 2.75 11.15 83.22 0.93 3.68 16 18 N -0.30 -7.06 3.85 -187.45 -0.72 -7.78 16 19 N -0.35 -8.20 12.56 -56.55 -0.71 -8.91 16 20 C 0.16 3.33 11.79 85.50 1.01 4.34 16 21 C -0.38 -9.70 6.17 -19.89 -0.12 -9.83 16 22 C 0.56 14.19 8.26 69.88 0.58 14.77 16 23 O -0.57 -17.97 16.43 19.23 0.32 -17.66 16 24 O -0.50 -8.37 13.39 -58.48 -0.78 -9.15 16 25 C 0.21 5.57 6.75 39.46 0.27 5.84 16 26 C -0.26 -6.70 9.63 22.65 0.22 -6.48 16 27 H 0.06 1.55 7.18 -2.39 -0.02 1.54 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.62 6.95 -2.39 -0.02 1.61 16 30 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 32 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 33 H 0.07 1.78 7.97 -2.39 -0.02 1.76 16 34 H 0.08 1.81 7.97 -2.39 -0.02 1.79 16 35 H 0.41 8.84 7.67 -92.70 -0.71 8.13 16 36 H 0.19 2.45 6.81 -2.91 -0.02 2.43 16 37 H 0.21 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.23 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.42 3.49 8.98 -74.06 -0.67 2.83 16 40 H 0.14 3.97 7.11 -2.91 -0.02 3.95 16 Total: -1.00 -70.87 344.06 3.42 -67.45 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -0.28 Total: 14.98 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 5.13 Total: -12.41 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -2.99 Total: -87.69 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.47 Total: -26.81 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -70.87 3.42 -67.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573540155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.307 kcal (2) G-P(sol) polarization free energy of solvation -70.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds