Wall clock time and date at job start Tue Mar 31 2020 08:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47300 * 2 1 4 4 C 1.50697 * 109.46916 * 119.99884 * 2 1 3 5 5 H 1.08003 * 119.99920 * 120.00239 * 4 2 1 6 6 C 1.37871 * 120.00260 * 300.00180 * 4 2 1 7 7 N 1.31512 * 120.00064 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 120.00196 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47098 * 59.99741 * 8 6 4 10 10 H 1.48495 * 109.46998 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46858 * 299.99706 * 8 6 4 12 12 N 1.46902 * 109.47188 * 239.99994 * 2 1 3 13 13 C 1.46895 * 111.00044 * 183.95719 * 12 2 1 14 14 C 1.46896 * 110.99900 * 59.99798 * 12 2 1 15 15 C 1.50707 * 109.47085 * 189.99946 * 14 12 2 16 16 N 1.30233 * 124.92541 * 274.97676 * 15 14 12 17 17 C 1.35528 * 109.71225 * 180.02562 * 16 15 14 18 18 C 1.40033 * 133.40504 * 180.02562 * 17 16 15 19 19 C 1.36168 * 120.08765 * 179.97438 * 18 17 16 20 20 C 1.40217 * 120.51595 * 0.02562 * 19 18 17 21 21 C 1.47473 * 119.94269 * 179.97438 * 20 19 18 22 22 O 1.21513 * 120.00214 * 179.97438 * 21 20 19 23 23 O 1.34747 * 120.00402 * 359.97438 * 21 20 19 24 24 C 1.39434 * 120.11393 * 0.26573 * 20 19 18 25 25 C 1.38392 * 119.57179 * 359.46171 * 24 20 19 26 26 N 1.35837 * 124.92431 * 95.00306 * 15 14 12 27 27 H 0.97003 * 126.36897 * 359.93575 * 26 15 14 28 28 H 1.08998 * 109.47019 * 299.99879 * 1 2 3 29 29 H 1.08997 * 109.46845 * 60.00168 * 1 2 3 30 30 H 1.09010 * 109.47035 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00454 * 180.02562 * 7 6 4 32 32 H 1.09008 * 109.46833 * 296.04158 * 13 12 2 33 33 H 1.08998 * 109.47725 * 56.04291 * 13 12 2 34 34 H 1.08996 * 109.47367 * 176.04783 * 13 12 2 35 35 H 1.08997 * 109.47202 * 70.00254 * 14 12 2 36 36 H 1.08999 * 109.47424 * 309.99843 * 14 12 2 37 37 H 1.08006 * 119.95461 * 359.95574 * 18 17 16 38 38 H 1.07998 * 119.74204 * 179.97438 * 19 18 17 39 39 H 0.96700 * 117.00482 * 180.02562 * 23 21 20 40 40 H 1.08004 * 120.21796 * 179.70673 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8074 -1.1190 4.0078 10 1 1.8278 -0.4193 5.2204 11 1 1.8279 -2.5198 4.0082 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5487 -0.0264 -2.4210 15 6 1.8580 -0.8912 -3.6159 16 7 2.9933 -0.9029 -4.2539 17 6 2.9344 -1.7915 -5.2755 18 6 3.8506 -2.1935 -6.2552 19 6 3.4978 -3.1332 -7.1753 20 6 2.2184 -3.7065 -7.1530 21 6 1.8495 -4.7228 -8.1559 22 8 0.7412 -5.2206 -8.1372 23 8 2.7414 -5.0994 -9.0931 24 6 1.2922 -3.3129 -6.1878 25 6 1.6483 -2.3623 -5.2471 26 7 0.9929 -1.7711 -4.1839 27 1 0.0840 -1.9509 -3.8967 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 0.7094 1.1618 3.4843 32 1 3.9192 0.2044 -1.2300 33 1 3.8070 -1.2915 -0.2719 34 1 3.8164 -1.3722 -2.0499 35 1 2.0519 0.9345 -2.5280 36 1 0.4722 0.1323 -2.3564 37 1 4.8384 -1.7573 -6.2813 38 1 4.2087 -3.4388 -7.9287 39 1 2.4537 -5.7685 -9.7293 40 1 0.3047 -3.7499 -6.1719 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222112.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:47 Heat of formation + Delta-G solvation = -8.840952 kcal Electronic energy + Delta-G solvation = -23812.649713 eV Core-core repulsion = 20207.343896 eV Total energy + Delta-G solvation = -3605.305817 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.26611 -40.36183 -37.68554 -36.72367 -36.29281 -33.29394 -32.95119 -30.53724 -30.27683 -29.16184 -27.73915 -25.10917 -24.32569 -23.33720 -22.56511 -21.32575 -20.82135 -19.55150 -18.75923 -17.76907 -17.38469 -16.54675 -16.05257 -15.90483 -15.59356 -15.08558 -14.93763 -14.28558 -14.04438 -13.88430 -13.82937 -13.70859 -12.99465 -12.60139 -12.30394 -12.07031 -11.93137 -11.76282 -11.68151 -11.22629 -11.08057 -10.90012 -10.85769 -10.82873 -10.67939 -10.27577 -10.20255 -10.00852 -9.93057 -9.02775 -8.59768 -8.50282 -8.30864 -7.41052 -6.09961 -4.14741 0.32989 1.22921 2.15848 2.55697 2.84095 3.04259 3.28126 3.32593 3.35683 3.71106 4.07463 4.34706 4.47161 4.76267 4.86738 4.98487 5.10097 5.15269 5.19400 5.23991 5.45767 5.64713 5.81594 5.88561 6.05383 6.16721 6.22203 6.24146 6.30656 6.40491 6.59672 6.66440 6.81033 6.87458 6.99600 7.23890 7.35511 7.52793 7.64306 7.72781 7.84853 8.02200 8.17399 8.41972 8.90482 9.50622 10.96916 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.028879 B = 0.002727 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.332722 B =10264.533324 C =10293.251746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.213 3.787 3 H 0.004 0.996 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.532 5.532 13 C 0.035 3.965 14 C 0.113 3.887 15 C 0.340 3.660 16 N -0.499 5.499 17 C 0.093 3.907 18 C -0.082 4.082 19 C -0.077 4.077 20 C -0.132 4.132 21 C 0.534 3.466 22 O -0.521 6.521 23 O -0.511 6.511 24 C -0.025 4.025 25 C 0.021 3.979 26 N -0.584 5.584 27 H 0.428 0.572 28 H 0.089 0.911 29 H 0.008 0.992 30 H 0.035 0.965 31 H 0.262 0.738 32 H 0.017 0.983 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.413 0.587 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.732 -6.205 -19.486 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.108 3.892 3 H 0.022 0.978 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.258 5.258 13 C -0.113 4.113 14 C -0.017 4.017 15 C 0.073 3.927 16 N -0.220 5.220 17 C -0.029 4.029 18 C -0.101 4.101 19 C -0.098 4.098 20 C -0.135 4.135 21 C 0.380 3.620 22 O -0.411 6.411 23 O -0.323 6.323 24 C -0.046 4.046 25 C -0.089 4.089 26 N -0.193 5.193 27 H 0.267 0.733 28 H 0.107 0.893 29 H 0.027 0.973 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.272 0.728 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.018 -5.888 -18.844 19.846 hybrid contribution -0.792 -0.690 0.434 1.137 sum 1.226 -6.578 -18.410 19.588 Atomic orbital electron populations 1.21917 0.97697 0.99746 1.00112 1.19304 0.92273 0.92340 0.85278 0.97793 1.21064 1.31357 1.12482 0.89520 0.91782 1.24913 0.95099 0.95043 0.99040 1.69860 1.36728 1.22876 1.23724 0.86553 0.79182 0.79713 0.81941 1.20246 1.21313 1.20214 1.62216 1.10784 1.52024 1.00818 1.22295 0.87418 0.99616 1.02009 1.20802 1.02285 0.92916 0.85686 1.24036 0.84356 0.89808 0.94538 1.70582 1.21089 1.22258 1.08033 1.19451 0.92377 0.95332 0.95716 1.19944 0.99091 0.97889 0.93195 1.20759 0.94944 0.95514 0.98602 1.18453 0.96159 1.01040 0.97816 1.20706 0.81653 0.80177 0.79501 1.90897 1.22614 1.54683 1.72897 1.84563 1.46524 1.58948 1.42252 1.19920 0.99534 0.93865 0.91236 1.18600 0.95105 1.01220 0.93986 1.43120 1.16301 1.34640 1.25285 0.73256 0.89263 0.97344 0.94554 0.92797 0.96424 0.90417 0.92837 0.91567 0.88414 0.84518 0.84085 0.72849 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.76 37.16 0.33 -2.71 16 2 C 0.21 5.03 2.06 -68.86 -0.14 4.89 16 3 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 16 4 C -0.51 -13.23 7.88 -34.44 -0.27 -13.50 16 5 H 0.06 1.69 6.41 -52.48 -0.34 1.35 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -24.42 11.32 55.43 0.63 -23.79 16 8 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.53 -10.74 4.61 -237.73 -1.10 -11.84 16 13 C 0.03 0.69 9.06 60.06 0.54 1.24 16 14 C 0.11 1.87 5.40 -4.97 -0.03 1.85 16 15 C 0.34 5.29 6.85 -154.90 -1.06 4.23 16 16 N -0.50 -8.21 10.17 -8.18 -0.08 -8.30 16 17 C 0.09 1.36 7.23 -84.62 -0.61 0.75 16 18 C -0.08 -0.96 10.03 -39.65 -0.40 -1.36 16 19 C -0.08 -0.79 9.53 -39.58 -0.38 -1.17 16 20 C -0.13 -1.48 5.88 -104.95 -0.62 -2.10 16 21 C 0.53 5.70 8.26 34.49 0.28 5.99 16 22 O -0.52 -6.94 17.11 -19.28 -0.33 -7.27 16 23 O -0.51 -3.74 12.65 -40.62 -0.51 -4.25 16 24 C -0.02 -0.30 9.61 -39.08 -0.38 -0.67 16 25 C 0.02 0.28 7.29 -84.00 -0.61 -0.33 16 26 N -0.58 -7.70 6.23 -8.04 -0.05 -7.75 16 27 H 0.43 4.48 8.96 -40.82 -0.37 4.11 16 28 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 29 H 0.01 0.15 6.20 -51.93 -0.32 -0.17 16 30 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.08 1.64 6.10 -51.93 -0.32 1.32 16 34 H 0.05 1.01 6.50 -51.93 -0.34 0.67 16 35 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 36 H 0.10 1.47 5.83 -51.93 -0.30 1.17 16 37 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 38 H 0.14 1.10 7.58 -52.49 -0.40 0.70 16 39 H 0.41 1.15 9.11 45.56 0.42 1.56 16 40 H 0.14 1.50 7.64 -52.48 -0.40 1.10 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -31.26 335.41 -8.77 -40.03 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.93 Total: 3.76 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.43 Total: -1.39 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.60 Total: -51.67 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.84 Total: -11.52 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.26 -8.77 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222112.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.191 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds