Wall clock time and date at job start Tue Mar 31 2020 07:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47278 * 2 1 4 4 C 1.53002 * 109.47226 * 120.00527 * 2 1 3 5 5 N 1.46497 * 109.47102 * 178.16553 * 4 2 1 6 6 C 1.46498 * 120.00259 * 275.61415 * 5 4 2 7 7 C 1.50691 * 109.47149 * 284.66008 * 6 5 4 8 8 H 1.08000 * 120.00762 * 359.97438 * 7 6 5 9 9 C 1.37887 * 120.00233 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99602 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00112 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47070 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46849 * 120.00054 * 11 9 7 14 14 H 1.48501 * 109.46727 * 239.99867 * 11 9 7 15 15 C 1.34781 * 120.00338 * 95.61473 * 5 4 2 16 16 O 1.21567 * 119.99706 * 6.60083 * 15 5 4 17 17 C 1.47795 * 120.00588 * 186.59975 * 15 5 4 18 18 C 1.41150 * 118.94764 * 326.81424 * 17 15 5 19 19 C 1.35404 * 121.76323 * 180.29208 * 18 17 15 20 20 C 1.45293 * 119.09522 * 359.47676 * 19 18 17 21 21 N 1.30879 * 138.53396 * 180.16603 * 20 19 18 22 22 O 1.21496 * 109.06873 * 180.30811 * 21 20 19 23 23 N 1.21475 * 116.30359 * 359.97438 * 22 21 20 24 24 C 1.31073 * 109.08048 * 0.02562 * 23 22 21 25 25 C 1.37773 * 118.95349 * 146.83166 * 17 15 5 26 26 H 1.09003 * 109.47040 * 299.99618 * 1 2 3 27 27 H 1.08997 * 109.47384 * 59.99510 * 1 2 3 28 28 H 1.09000 * 109.47294 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46971 * 239.99884 * 2 1 3 30 30 H 1.08997 * 109.47283 * 185.10019 * 3 2 1 31 31 H 1.09001 * 109.47099 * 305.10117 * 3 2 1 32 32 H 1.08998 * 109.46707 * 65.10357 * 3 2 1 33 33 H 1.09000 * 109.47315 * 58.16393 * 4 2 1 34 34 H 1.09001 * 109.46528 * 298.16259 * 4 2 1 35 35 H 1.09008 * 109.46807 * 44.65898 * 6 5 4 36 36 H 1.09005 * 109.47532 * 164.65258 * 6 5 4 37 37 H 0.96999 * 119.99847 * 179.97438 * 10 9 7 38 38 H 1.08006 * 119.11928 * 0.02562 * 18 17 15 39 39 H 1.08001 * 120.45265 * 179.69848 * 19 18 17 40 40 H 1.08006 * 120.13876 * 359.95864 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5043 -0.7598 1.2272 6 6 4.1984 -1.8176 0.4887 7 6 4.1159 -3.1078 1.2629 8 1 3.5987 -3.1370 2.2105 9 6 4.7009 -4.2513 0.7615 10 7 5.3304 -4.2160 -0.3927 11 14 4.5981 -5.8508 1.7208 12 1 3.8410 -5.6260 2.9783 13 1 3.9037 -6.8760 0.9009 14 1 5.9683 -6.3219 2.0460 15 6 4.2131 0.1781 1.8865 16 8 3.6428 0.9835 2.5964 17 6 5.6835 0.2275 1.7465 18 6 6.3937 -0.9792 1.5681 19 6 7.7415 -1.0008 1.4397 20 6 8.4747 0.2530 1.4753 21 7 9.7133 0.6676 1.3909 22 8 9.7349 1.8777 1.4977 23 7 8.6609 2.4238 1.6519 24 6 7.7160 1.5154 1.6631 25 6 6.3174 1.4498 1.7946 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1262 1.4438 -0.0914 31 1 1.6040 1.9820 -0.8408 32 1 1.7532 1.9291 0.9322 33 1 1.6501 -1.7391 1.2657 34 1 1.7038 -0.1889 2.1388 35 1 3.7288 -1.9482 -0.4863 36 1 5.2441 -1.5408 0.3541 37 1 5.7423 -5.0204 -0.7452 38 1 5.8479 -1.9107 1.5375 39 1 8.2640 -1.9369 1.3089 40 1 5.7426 2.3538 1.9320 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647251294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:38 Heat of formation + Delta-G solvation = 116.425712 kcal Electronic energy + Delta-G solvation = -25147.904026 eV Core-core repulsion = 21548.030179 eV Total energy + Delta-G solvation = -3599.873847 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.43460 -40.10421 -37.69753 -36.14105 -34.69393 -34.51768 -32.83995 -32.48494 -30.78828 -27.94310 -27.07444 -26.81663 -24.80087 -24.66040 -23.16983 -21.04768 -20.55344 -19.39812 -18.74520 -18.56153 -17.71735 -16.81075 -16.15786 -15.91725 -14.94356 -14.81256 -14.40214 -14.30208 -14.08349 -14.01784 -13.32916 -13.08025 -12.95365 -12.60241 -12.42384 -12.25278 -11.97371 -11.68501 -11.63022 -11.52557 -11.37762 -11.14398 -11.06180 -10.91949 -10.69936 -10.48202 -10.29642 -10.22250 -9.95149 -9.56494 -9.24541 -8.75483 -8.31365 -7.88645 -6.43433 -4.53861 0.10645 1.24331 2.04844 2.99661 3.08686 3.18105 3.19408 3.23635 3.54873 3.71232 3.82791 3.92897 4.14830 4.75877 4.87477 4.94281 5.07030 5.18728 5.22861 5.36443 5.39711 5.53829 5.75288 5.83512 5.92653 5.95719 6.01310 6.08109 6.19297 6.26849 6.32703 6.37471 6.48685 6.50806 6.56978 6.68892 6.82318 6.98300 7.27094 7.51244 7.74123 8.08919 8.51845 8.61254 8.70360 9.15517 10.61089 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.010213 B = 0.006348 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.977601 B = 4410.008160 C = 6641.737567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.139 4.139 4 C 0.123 3.877 5 N -0.580 5.580 6 C 0.202 3.798 7 C -0.548 4.548 8 H 0.068 0.932 9 C 0.070 3.930 10 N -0.879 5.879 11 Si 0.897 3.103 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.279 1.279 15 C 0.553 3.447 16 O -0.556 6.556 17 C -0.072 4.072 18 C -0.080 4.080 19 C -0.082 4.082 20 C 0.030 3.970 21 N -0.355 5.355 22 O 0.362 5.638 23 N -0.347 5.347 24 C 0.014 3.986 25 C -0.030 4.030 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.270 0.730 38 H 0.212 0.788 39 H 0.150 0.850 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.956 6.151 0.370 6.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.197 4.197 4 C 0.000 4.000 5 N -0.308 5.308 6 C 0.083 3.917 7 C -0.586 4.586 8 H 0.087 0.913 9 C -0.136 4.136 10 N -0.515 5.515 11 Si 0.724 3.276 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.205 1.205 15 C 0.341 3.659 16 O -0.437 6.437 17 C -0.080 4.080 18 C -0.100 4.100 19 C -0.103 4.103 20 C -0.124 4.124 21 N -0.079 5.079 22 O 0.128 5.872 23 N -0.069 5.069 24 C -0.139 4.139 25 C -0.052 4.052 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.228 0.772 39 H 0.168 0.832 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.164 7.057 0.537 7.079 hybrid contribution -0.641 -1.482 0.245 1.634 sum -0.805 5.575 0.783 5.687 Atomic orbital electron populations 1.21738 0.95039 1.01685 1.01434 1.21485 0.95482 0.96719 0.99524 1.21769 1.00811 0.95824 1.01249 1.21449 0.79764 1.01225 0.97590 1.48037 1.06442 1.27023 1.49331 1.20424 0.94433 0.84382 0.92446 1.21485 1.36762 0.93340 1.07009 0.91340 1.24999 0.94501 0.99205 0.94862 1.69929 1.34050 1.29765 1.17780 0.86436 0.78283 0.82754 0.80158 1.19404 1.20627 1.20521 1.18028 0.85996 0.81458 0.80439 1.90719 1.71332 1.41761 1.39846 1.20055 0.94904 0.93179 0.99844 1.22835 0.93882 1.01532 0.91753 1.20932 0.92705 0.92966 1.03696 1.24343 0.87822 0.98128 1.02067 1.75142 1.19852 0.93504 1.19410 1.85346 1.27358 1.14416 1.60049 1.75182 0.92464 1.21447 1.17840 1.22627 0.97329 0.88698 1.05221 1.20030 0.88151 0.98711 0.98291 0.92785 0.92898 0.92543 0.90875 0.93262 0.93556 0.92340 0.89924 0.90413 0.94494 0.91415 0.92050 0.77170 0.83187 0.83279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.19 37.16 0.34 -1.35 16 2 C -0.11 -1.65 3.15 -90.62 -0.29 -1.94 16 3 C -0.14 -2.04 8.19 37.16 0.30 -1.74 16 4 C 0.12 2.06 4.97 -4.04 -0.02 2.04 16 5 N -0.58 -10.93 2.23 -176.19 -0.39 -11.33 16 6 C 0.20 4.21 4.69 -5.20 -0.02 4.18 16 7 C -0.55 -12.42 7.47 -34.44 -0.26 -12.68 16 8 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.07 1.62 5.45 -17.82 -0.10 1.53 16 10 N -0.88 -21.37 13.29 55.43 0.74 -20.63 16 11 Si 0.90 18.54 29.54 -169.99 -5.02 13.52 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 13 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 14 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 15 C 0.55 10.56 5.94 -12.35 -0.07 10.49 16 16 O -0.56 -11.37 15.57 5.31 0.08 -11.28 16 17 C -0.07 -1.29 5.54 -105.05 -0.58 -1.88 16 18 C -0.08 -1.43 7.23 -39.49 -0.29 -1.72 16 19 C -0.08 -1.37 10.28 -37.79 -0.39 -1.76 16 20 C 0.03 0.51 7.94 -81.25 -0.65 -0.13 16 21 N -0.35 -5.73 12.28 32.75 0.40 -5.33 16 22 O 0.36 5.49 11.67 26.93 0.31 5.80 16 23 N -0.35 -5.53 12.29 31.88 0.39 -5.13 16 24 C 0.01 0.23 7.75 -83.07 -0.64 -0.42 16 25 C -0.03 -0.50 9.58 -38.85 -0.37 -0.88 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.14 8.01 -51.93 -0.42 0.73 16 30 H 0.05 0.79 6.95 -51.93 -0.36 0.43 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.89 8.04 -51.93 -0.42 0.47 16 33 H 0.08 1.40 7.92 -51.93 -0.41 0.99 16 34 H 0.08 1.32 7.19 -51.93 -0.37 0.95 16 35 H 0.04 0.83 8.01 -51.92 -0.42 0.41 16 36 H 0.07 1.43 3.68 -56.89 -0.21 1.22 16 37 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 38 H 0.21 4.21 3.61 -52.48 -0.19 4.02 16 39 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 40 H 0.15 2.30 7.88 -52.48 -0.41 1.88 16 LS Contribution 333.58 15.07 5.03 5.03 Total: -1.00 -24.44 333.58 -6.35 -30.80 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.87 Total: 4.80 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -3.03 Total: -6.24 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 1.14 Total: -42.42 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: 0.40 Total: -5.48 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -24.44 -6.35 -30.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647251294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.222 kcal (2) G-P(sol) polarization free energy of solvation -24.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds