Wall clock time and date at job start Tue Mar 31 2020 08:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47313 * 2 1 4 4 C 1.53001 * 109.46972 * 239.99516 * 2 1 3 5 5 C 1.50698 * 109.46936 * 65.00673 * 4 2 1 6 6 H 1.07999 * 120.00150 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00075 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00162 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00296 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47399 * 89.99574 * 9 7 5 11 11 H 1.48497 * 109.47086 * 209.99963 * 9 7 5 12 12 H 1.48504 * 109.46943 * 329.99666 * 9 7 5 13 13 C 1.53001 * 109.47142 * 119.99783 * 2 1 3 14 14 N 1.46499 * 109.46905 * 295.00240 * 13 2 1 15 15 C 1.39786 * 119.99733 * 179.97438 * 14 13 2 16 16 C 1.38956 * 119.93513 * 359.97438 * 15 14 13 17 17 C 1.37857 * 120.09626 * 180.02562 * 16 15 14 18 18 C 1.39619 * 119.96701 * 359.97438 * 17 16 15 19 19 C 1.47768 * 120.06796 * 179.97438 * 18 17 16 20 20 C 1.35956 * 125.93641 * 180.02562 * 19 18 17 21 21 C 1.40967 * 106.74480 * 180.02562 * 20 19 18 22 22 C 1.34703 * 107.02889 * 359.97438 * 21 20 19 23 23 O 1.34353 * 108.67810 * 0.02562 * 22 21 20 24 24 C 1.39644 * 119.86793 * 0.25102 * 18 17 16 25 25 C 1.37994 * 119.90242 * 359.51353 * 24 18 17 26 26 F 1.35098 * 119.98425 * 180.25004 * 25 24 18 27 27 H 1.08999 * 109.47313 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47094 * 300.00628 * 1 2 3 29 29 H 1.09002 * 109.47249 * 60.00100 * 1 2 3 30 30 H 1.09002 * 109.46672 * 185.00422 * 4 2 1 31 31 H 1.08996 * 109.47577 * 305.00044 * 4 2 1 32 32 H 0.97001 * 120.00398 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47420 * 174.99876 * 13 2 1 34 34 H 1.09004 * 109.47033 * 54.99604 * 13 2 1 35 35 H 0.96994 * 120.00450 * 359.97438 * 14 13 2 36 36 H 1.08003 * 119.94592 * 0.02562 * 16 15 14 37 37 H 1.08001 * 120.01203 * 179.97438 * 17 16 15 38 38 H 1.08003 * 126.62497 * 359.96135 * 20 19 18 39 39 H 1.07998 * 126.48613 * 180.02562 * 21 20 19 40 40 H 1.08001 * 125.66313 * 180.02562 * 22 21 20 41 41 H 1.07994 * 120.04882 * 179.74806 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0801 0.9741 -2.3757 7 6 1.9923 -0.4024 -3.7282 8 7 2.6754 -1.5195 -3.8511 9 14 1.4977 0.5620 -5.2497 10 1 2.5629 1.5414 -5.5830 11 1 1.3102 -0.3723 -6.3886 12 1 0.2265 1.2834 -4.9869 13 6 2.0400 -0.7212 1.2493 14 7 1.6523 0.0354 2.4423 15 6 2.0082 -0.4302 3.7114 16 6 2.7292 -1.6111 3.8398 17 6 3.0814 -2.0736 5.0897 18 6 2.7139 -1.3544 6.2286 19 6 3.0898 -1.8484 7.5695 20 6 2.7954 -1.2472 8.7529 21 6 3.3440 -2.0574 9.7677 22 6 3.9390 -3.1019 9.1600 23 8 3.7838 -2.9725 7.8317 24 6 1.9853 -0.1703 6.0982 25 6 1.6397 0.2903 4.8441 26 9 0.9393 1.4384 4.7158 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.1263 -0.7996 -1.2055 31 1 1.6053 -1.7199 -1.2951 32 1 2.9226 -1.8425 -4.7317 33 1 3.1263 -0.7995 1.2057 34 1 1.6053 -1.7198 1.2953 35 1 1.1488 0.8595 2.3517 36 1 3.0139 -2.1674 2.9589 37 1 3.6414 -2.9919 5.1879 38 1 2.2480 -0.3261 8.8890 39 1 3.2955 -1.8755 10.8311 40 1 4.4553 -3.9094 9.6578 41 1 1.6960 0.3862 6.9773 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652295082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:08 Heat of formation + Delta-G solvation = -23.177060 kcal Electronic energy + Delta-G solvation = -23130.892655 eV Core-core repulsion = 19505.045216 eV Total energy + Delta-G solvation = -3625.847439 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.80568 -42.66035 -39.30837 -36.89747 -34.35855 -33.20760 -32.27576 -30.80811 -30.58521 -27.91276 -26.86018 -25.89248 -23.56672 -22.92057 -22.23185 -21.36581 -20.54611 -19.43147 -18.36914 -17.25210 -16.69947 -16.56252 -16.19672 -16.14225 -15.63887 -14.90629 -14.69960 -14.54570 -14.26763 -14.09066 -13.81334 -13.10934 -13.07086 -12.90188 -12.75169 -12.51941 -12.41001 -12.15259 -12.04255 -11.63320 -11.23017 -10.99602 -10.97793 -10.52639 -10.44494 -10.40869 -10.09710 -9.88016 -9.38447 -9.11631 -8.98471 -8.72150 -8.41850 -7.18382 -6.06444 -4.08510 0.73514 1.14170 1.92816 2.52994 2.72573 3.27890 3.34661 3.36721 3.43846 3.66891 4.21290 4.40848 4.44072 4.63388 4.80376 4.89017 4.97647 5.14599 5.29500 5.37037 5.49165 5.52934 5.56791 5.65524 5.73336 5.81619 5.91850 6.00484 6.08914 6.13476 6.19837 6.26355 6.32882 6.38980 6.59426 6.77274 6.92313 6.96288 6.96889 7.26077 7.55428 7.68305 7.70489 7.91612 8.33665 8.96932 9.55596 11.04873 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.032810 B = 0.002360 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.191073 B =11861.415770 C =12577.720957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 H 0.063 0.937 4 C 0.031 3.969 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.122 3.878 14 N -0.728 5.728 15 C 0.213 3.787 16 C -0.177 4.177 17 C -0.051 4.051 18 C -0.074 4.074 19 C 0.054 3.946 20 C -0.212 4.212 21 C -0.209 4.209 22 C -0.047 4.047 23 O -0.173 6.173 24 C -0.077 4.077 25 C 0.011 3.989 26 F -0.142 7.142 27 H 0.047 0.953 28 H 0.030 0.970 29 H 0.065 0.935 30 H 0.018 0.982 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.404 0.596 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.202 0.798 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 -1.212 24.556 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.115 4.115 3 H 0.082 0.918 4 C -0.007 4.007 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.001 4.001 14 N -0.354 5.354 15 C 0.104 3.896 16 C -0.200 4.200 17 C -0.070 4.070 18 C -0.077 4.077 19 C 0.004 3.996 20 C -0.231 4.231 21 C -0.228 4.228 22 C -0.114 4.114 23 O -0.069 6.069 24 C -0.097 4.097 25 C -0.013 4.013 26 F -0.120 7.120 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.240 0.760 36 H 0.157 0.843 37 H 0.150 0.850 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.219 0.781 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.803 -1.594 23.962 24.028 hybrid contribution -0.549 1.053 -0.685 1.371 sum 0.253 -0.541 23.276 23.284 Atomic orbital electron populations 1.21738 0.95795 1.01209 1.00348 1.21461 0.95771 0.99906 0.94405 0.91822 1.19081 0.96298 0.95568 0.89752 1.21173 1.35107 1.08389 0.90869 0.92531 1.25014 0.95221 0.95068 0.99165 1.69953 1.38769 1.21064 1.23586 0.86603 0.78932 0.79791 0.82736 1.20682 1.21234 1.19903 1.21784 0.99477 0.95315 0.83543 1.45124 1.59826 1.28030 1.02388 1.18099 0.93403 0.92967 0.85132 1.20558 1.04259 0.96690 0.98480 1.21038 0.96608 0.98602 0.90777 1.17078 1.05428 0.96836 0.88365 1.20354 0.98232 0.86969 0.94068 1.21729 1.07218 1.03032 0.91133 1.21732 1.03868 0.96635 1.00547 1.24054 1.05351 1.02150 0.79887 1.84064 1.58639 1.38396 1.25764 1.20620 0.97730 0.95505 0.95830 1.16809 1.04673 0.87021 0.92760 1.91450 1.77099 1.46917 1.96582 0.93356 0.95084 0.91593 0.96377 0.96218 0.92951 0.91942 0.92015 0.76031 0.84264 0.85004 0.83440 0.83452 0.78097 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.88 37.16 0.33 -2.02 16 2 C -0.10 -1.80 2.37 -90.62 -0.22 -2.02 16 3 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.52 -13.87 8.41 -34.44 -0.29 -14.16 16 6 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.12 1.91 4.30 -4.04 -0.02 1.89 16 14 N -0.73 -10.32 5.46 -58.51 -0.32 -10.64 16 15 C 0.21 2.88 6.66 -83.61 -0.56 2.32 16 16 C -0.18 -2.21 9.29 -39.46 -0.37 -2.57 16 17 C -0.05 -0.60 9.71 -39.21 -0.38 -0.98 16 18 C -0.07 -0.88 5.87 -104.96 -0.62 -1.49 16 19 C 0.05 0.62 7.03 -36.51 -0.26 0.36 16 20 C -0.21 -2.13 10.26 -39.37 -0.40 -2.53 16 21 C -0.21 -1.79 10.89 -39.80 -0.43 -2.22 16 22 C -0.05 -0.39 12.08 29.48 0.36 -0.03 16 23 O -0.17 -1.91 10.41 4.52 0.05 -1.86 16 24 C -0.08 -0.89 9.53 -39.15 -0.37 -1.27 16 25 C 0.01 0.15 7.30 -39.31 -0.29 -0.14 16 26 F -0.14 -1.92 16.62 2.25 0.04 -1.88 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.46 7.18 -51.93 -0.37 0.09 16 29 H 0.07 1.26 6.95 -51.93 -0.36 0.90 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.06 0.98 7.94 -51.93 -0.41 0.57 16 34 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 35 H 0.40 5.59 7.13 -40.82 -0.29 5.30 16 36 H 0.14 1.65 6.71 -52.48 -0.35 1.30 16 37 H 0.13 1.33 7.90 -52.49 -0.41 0.92 16 38 H 0.15 1.23 7.25 -52.48 -0.38 0.85 16 39 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.20 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.14 1.28 6.98 -52.49 -0.37 0.92 16 LS Contribution 349.15 15.07 5.26 5.26 Total: -1.00 -29.63 349.15 -8.40 -38.02 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.41 Total: 3.07 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -3.73 Total: -22.78 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.42 Total: -35.99 kcal Atomic # 8 Polarization: -1.91 SS G_CDS: 0.05 Total: -1.86 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.63 -8.40 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652295082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.847 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds