Wall clock time and date at job start Tue Mar 31 2020 08:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47313 * 2 1 4 4 C 1.53001 * 109.46972 * 239.99516 * 2 1 3 5 5 C 1.50698 * 109.46936 * 65.00673 * 4 2 1 6 6 H 1.07999 * 120.00150 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00075 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00162 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00296 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47399 * 89.99574 * 9 7 5 11 11 H 1.48497 * 109.47086 * 209.99963 * 9 7 5 12 12 H 1.48504 * 109.46943 * 329.99666 * 9 7 5 13 13 C 1.53001 * 109.47142 * 119.99783 * 2 1 3 14 14 N 1.46499 * 109.46905 * 295.00240 * 13 2 1 15 15 C 1.39786 * 119.99733 * 179.97438 * 14 13 2 16 16 C 1.38956 * 119.93513 * 359.97438 * 15 14 13 17 17 C 1.37857 * 120.09626 * 180.02562 * 16 15 14 18 18 C 1.39619 * 119.96701 * 359.97438 * 17 16 15 19 19 C 1.47768 * 120.06796 * 179.97438 * 18 17 16 20 20 C 1.35956 * 125.93641 * 180.02562 * 19 18 17 21 21 C 1.40967 * 106.74480 * 180.02562 * 20 19 18 22 22 C 1.34703 * 107.02889 * 359.97438 * 21 20 19 23 23 O 1.34353 * 108.67810 * 0.02562 * 22 21 20 24 24 C 1.39644 * 119.86793 * 0.25102 * 18 17 16 25 25 C 1.37994 * 119.90242 * 359.51353 * 24 18 17 26 26 F 1.35098 * 119.98425 * 180.25004 * 25 24 18 27 27 H 1.08999 * 109.47313 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47094 * 300.00628 * 1 2 3 29 29 H 1.09002 * 109.47249 * 60.00100 * 1 2 3 30 30 H 1.09002 * 109.46672 * 185.00422 * 4 2 1 31 31 H 1.08996 * 109.47577 * 305.00044 * 4 2 1 32 32 H 0.97001 * 120.00398 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47420 * 174.99876 * 13 2 1 34 34 H 1.09004 * 109.47033 * 54.99604 * 13 2 1 35 35 H 0.96994 * 120.00450 * 359.97438 * 14 13 2 36 36 H 1.08003 * 119.94592 * 0.02562 * 16 15 14 37 37 H 1.08001 * 120.01203 * 179.97438 * 17 16 15 38 38 H 1.08003 * 126.62497 * 359.96135 * 20 19 18 39 39 H 1.07998 * 126.48613 * 180.02562 * 21 20 19 40 40 H 1.08001 * 125.66313 * 180.02562 * 22 21 20 41 41 H 1.07994 * 120.04882 * 179.74806 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0801 0.9741 -2.3757 7 6 1.9923 -0.4024 -3.7282 8 7 2.6754 -1.5195 -3.8511 9 14 1.4977 0.5620 -5.2497 10 1 2.5629 1.5414 -5.5830 11 1 1.3102 -0.3723 -6.3886 12 1 0.2265 1.2834 -4.9869 13 6 2.0400 -0.7212 1.2493 14 7 1.6523 0.0354 2.4423 15 6 2.0082 -0.4302 3.7114 16 6 2.7292 -1.6111 3.8398 17 6 3.0814 -2.0736 5.0897 18 6 2.7139 -1.3544 6.2286 19 6 3.0898 -1.8484 7.5695 20 6 2.7954 -1.2472 8.7529 21 6 3.3440 -2.0574 9.7677 22 6 3.9390 -3.1019 9.1600 23 8 3.7838 -2.9725 7.8317 24 6 1.9853 -0.1703 6.0982 25 6 1.6397 0.2903 4.8441 26 9 0.9393 1.4384 4.7158 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.1263 -0.7996 -1.2055 31 1 1.6053 -1.7199 -1.2951 32 1 2.9226 -1.8425 -4.7317 33 1 3.1263 -0.7995 1.2057 34 1 1.6053 -1.7198 1.2953 35 1 1.1488 0.8595 2.3517 36 1 3.0139 -2.1674 2.9589 37 1 3.6414 -2.9919 5.1879 38 1 2.2480 -0.3261 8.8890 39 1 3.2955 -1.8755 10.8311 40 1 4.4553 -3.9094 9.6578 41 1 1.6960 0.3862 6.9773 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652295082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:08 Heat of formation + Delta-G solvation = -37.843509 kcal Electronic energy + Delta-G solvation = -23131.528640 eV Core-core repulsion = 19505.045216 eV Total energy + Delta-G solvation = -3626.483424 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.82100 -43.38405 -40.30539 -38.21192 -35.81124 -34.21668 -33.83148 -31.78355 -31.55924 -29.22708 -28.36199 -27.13462 -25.11041 -23.91293 -23.36191 -22.19288 -21.38629 -20.89171 -19.24261 -18.57934 -18.26298 -17.44369 -17.33060 -16.97628 -16.65340 -16.52152 -16.01985 -15.75391 -15.46383 -15.12907 -14.70904 -14.49291 -14.30177 -14.10103 -13.74493 -13.65750 -13.37449 -13.34101 -13.26220 -13.06066 -12.81251 -12.70453 -12.30022 -12.16296 -12.03784 -11.81470 -11.35359 -11.18394 -11.05240 -10.79548 -10.54040 -9.92759 -9.55905 -8.18518 -8.16044 -6.27067 -0.13957 0.19397 1.15913 1.40716 1.40880 1.51544 1.78801 2.02173 2.29905 2.43391 2.73672 3.15680 3.25943 3.68429 3.73392 3.97208 4.08285 4.14554 4.15720 4.23213 4.29361 4.34739 4.52906 4.70813 4.76989 4.79110 4.89994 4.92087 5.01349 5.04614 5.11938 5.18658 5.27861 5.29958 5.38174 5.43519 5.51021 5.65497 5.67029 5.75817 5.85818 6.13789 6.23351 6.28488 6.62570 6.88436 7.41141 8.93254 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.032810 B = 0.002360 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.191073 B =11861.415770 C =12577.720957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 H 0.062 0.938 4 C 0.035 3.965 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.001 4.001 8 N -0.932 5.932 9 Si 0.958 3.042 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.138 3.862 14 N -0.731 5.731 15 C 0.195 3.805 16 C -0.180 4.180 17 C -0.055 4.055 18 C -0.070 4.070 19 C 0.019 3.981 20 C -0.210 4.210 21 C -0.222 4.222 22 C -0.040 4.040 23 O -0.189 6.189 24 C -0.076 4.076 25 C 0.004 3.996 26 F -0.146 7.146 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.048 0.952 30 H -0.006 1.006 31 H -0.003 1.003 32 H 0.262 0.738 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.405 0.595 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.161 0.839 39 H 0.172 0.828 40 H 0.239 0.761 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.307 -0.784 26.605 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.105 4.105 3 H 0.080 0.920 4 C -0.003 4.003 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.573 5.573 9 Si 0.784 3.216 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.188 1.188 13 C 0.014 3.986 14 N -0.358 5.358 15 C 0.088 3.912 16 C -0.203 4.203 17 C -0.074 4.074 18 C -0.072 4.072 19 C -0.031 4.031 20 C -0.229 4.229 21 C -0.240 4.240 22 C -0.107 4.107 23 O -0.086 6.086 24 C -0.096 4.096 25 C -0.020 4.020 26 F -0.125 7.125 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.012 0.988 31 H 0.016 0.984 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.241 0.759 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.179 0.821 39 H 0.190 0.810 40 H 0.255 0.745 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.503 -1.155 26.045 26.075 hybrid contribution -0.396 0.848 -1.112 1.454 sum 0.107 -0.307 24.932 24.934 Atomic orbital electron populations 1.21650 0.94665 1.01194 1.00884 1.21218 0.96594 0.99258 0.93435 0.91998 1.18955 0.94683 0.94828 0.91833 1.21607 1.34555 1.08598 0.91995 0.92069 1.25904 0.95341 0.96065 1.02546 1.70081 1.40156 1.22744 1.24313 0.85543 0.78947 0.78388 0.78753 1.20071 1.21051 1.18839 1.21413 0.99094 0.95033 0.83032 1.44852 1.60731 1.28136 1.02099 1.18206 0.94439 0.93656 0.84869 1.20654 1.04104 0.96492 0.99001 1.21199 0.96622 0.99098 0.90476 1.17259 1.04455 0.96586 0.88917 1.20381 1.00372 0.88118 0.94179 1.22096 1.06290 1.03346 0.91154 1.22106 1.03831 0.96461 1.01629 1.24908 1.04139 1.02755 0.78925 1.84053 1.58853 1.38417 1.27277 1.20804 0.97265 0.95525 0.95965 1.16939 1.04946 0.86968 0.93134 1.91434 1.77258 1.47173 1.96643 0.93641 0.92208 0.93292 0.98767 0.98427 0.92921 0.92316 0.91890 0.75875 0.84101 0.83808 0.82106 0.81030 0.74485 0.82603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 8.88 71.98 0.64 -3.76 16 2 C -0.09 -3.25 2.37 -10.79 -0.03 -3.27 16 3 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.03 1.72 4.45 29.85 0.13 1.85 16 5 C -0.53 -28.81 8.41 25.60 0.22 -28.60 16 6 H 0.06 3.20 7.06 -2.91 -0.02 3.18 16 7 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 8 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 9 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 13 C 0.14 4.35 4.30 86.38 0.37 4.72 16 14 N -0.73 -20.40 5.46 -339.02 -1.85 -22.25 16 15 C 0.20 5.20 6.66 38.28 0.26 5.46 16 16 C -0.18 -4.43 9.29 22.35 0.21 -4.22 16 17 C -0.06 -1.24 9.71 22.51 0.22 -1.03 16 18 C -0.07 -1.57 5.87 -20.08 -0.12 -1.68 16 19 C 0.02 0.41 7.03 24.26 0.17 0.58 16 20 C -0.21 -3.76 10.26 22.41 0.23 -3.53 16 21 C -0.22 -3.17 10.89 22.13 0.24 -2.93 16 22 C -0.04 -0.56 12.08 67.01 0.81 0.25 16 23 O -0.19 -3.86 10.41 -6.73 -0.07 -3.93 16 24 C -0.08 -1.67 9.53 22.55 0.21 -1.45 16 25 C 0.00 0.10 7.30 22.44 0.16 0.26 16 26 F -0.15 -3.82 16.62 44.97 0.75 -3.07 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.72 7.18 -2.39 -0.02 1.71 16 29 H 0.05 1.85 6.95 -2.39 -0.02 1.83 16 30 H -0.01 -0.33 8.14 -2.39 -0.02 -0.34 16 31 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 33 H 0.06 1.88 7.94 -2.39 -0.02 1.86 16 34 H 0.06 1.96 7.94 -2.39 -0.02 1.94 16 35 H 0.41 10.92 7.13 -92.71 -0.66 10.26 16 36 H 0.14 3.35 6.71 -2.91 -0.02 3.33 16 37 H 0.14 2.81 7.90 -2.91 -0.02 2.79 16 38 H 0.16 2.29 7.25 -2.91 -0.02 2.27 16 39 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.24 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.16 2.65 6.98 -2.91 -0.02 2.63 16 Total: -1.00 -64.09 349.15 5.71 -58.38 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.39 Total: 17.46 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 4.19 Total: -36.96 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -1.57 Total: -77.54 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.07 Total: -3.93 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.75 Total: -3.07 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -64.09 5.71 -58.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652295082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.532 kcal (2) G-P(sol) polarization free energy of solvation -64.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds